IslandPathversion 1.0

IslandPath Analysis: Rhizobium etli CIAT 652



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 61.82 STD DEV: 3.47
Rhizobium etli CIAT 652, complete genome - 1..4513324
4343 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1055	 63.66	0	1082635..1083933	-	432	190890694	-	RHECIAT_CH0001073	-	probable processing peptidase protein
1056	 63.23	0	1083937..1085361	-	474	190890695	thrC	RHECIAT_CH0001074	-	threonine synthase protein
1057	 58.21	-1	1085358..1085558	-	66	190890696	-	RHECIAT_CH0001075	-	hypothetical protein
1058	 64.96	0	1085628..1086272	+	214	190890697	-	RHECIAT_CH0001076	-	hypothetical protein
1059	 63.62	0	1086471..1087160	-	229	190890698	-	RHECIAT_CH0001077	-	probable hydrolase phosphatase protein
1060	 65.33	+1	1087353..1087802	-	149	190890699	-	RHECIAT_CH0001078	-	hypothetical protein
1061	 60.58	0	1087812..1088156	-	114	190890700	-	RHECIAT_CH0001079	-	hypothetical protein
1062	 67.41	+1	1088208..1088744	-	178	190890701	-	RHECIAT_CH0001080	-	hypothetical protein
1063	 68.56	+1	1088924..1089610	-	228	190890702	-	RHECIAT_CH0001081	-	putative transcriptional regulator protein
1064	 60.30	0	1089680..1090009	+	109	190890703	-	RHECIAT_CH0001082	-	hypothetical protein
1065	 63.82	0	1090006..1090356	+	116	190890704	-	RHECIAT_CH0001083	-	putative antibiotic biosynthesis monooxygenase protein
1066	 62.12	0	1090481..1091623	+	380	190890705	ccrM	RHECIAT_CH0001084	-	site-specific DNA-methyltransferase (adenine-specific) protein
1067	 60.38	0	1091722..1092087	-	121	190890706	-	RHECIAT_CH0001085	-	hypothetical protein
1068	 58.54	0	1092092..1092706	-	204	190890707	-	RHECIAT_CH0001086	-	probable 2-haloacid dehalogenase protein
1069	 66.76	+1	1092709..1093812	-	367	190890708	mutY	RHECIAT_CH0001087	-	A/G-specific adenine glycosylase protein
1070	 66.46	+1	1093909..1094403	+	164	190890709	-	RHECIAT_CH0001088	-	hypothetical protein
1071	 55.39	-1	1094412..1094615	+	67	190890710	-	RHECIAT_CH0001089	-	hypothetical protein
1072	 52.66	-2	1094610..1094966	-	118	190890711	-	RHECIAT_CH0001090	-	hypothetical protein
1073	 54.82	-2	1094990..1095352	-	120	190890712	-	RHECIAT_CH0001091	-	hypothetical protein
1074	 55.56	-1	1095785..1095973	+	62	190890713	-	RHECIAT_CH0001092	-	hypothetical protein
1075	 61.52	0	1096232..1097008	+	258	190890714	-	RHECIAT_CH0001093	-	putative thiol-disulfide oxidoreductase protein
1076	 68.95	+2	1097114..1100575	+	1153	190890715	smc	RHECIAT_CH0001094	-	chromosome partition protein
1077	 60.93	0	1100621..1102696	-	691	190890716	-	RHECIAT_CH0001095	-	hypothetical protein
1078	 62.50	0	1102719..1103798	-	359	190890717	-	RHECIAT_CH0001096	-	putative tellurite resistance (toxic anion resistance) protein
1079	 60.51	0	1103795..1104574	-	259	190890718	-	RHECIAT_CH0001097	-	hypothetical protein
1080	 66.67	+1	1104735..1105385	-	216	190890719	-	RHECIAT_CH0001098	-	probable glutathione S-transferase protein
1081	 62.93	0	1105505..1106092	-	195	190890720	-	RHECIAT_CH0001099	-	hypothetical protein
1082	 53.95	-2	1106568..1106795	+	75	190890721	-	RHECIAT_CH0001100	-	hypothetical protein
1083	 65.47	+1	1106978..1109662	+	894	190890722	ppdK	RHECIAT_CH0001101	-	pyruvate phosphate dikinase protein
1084	 64.71	0	1109728..1110033	-	101	190890723	-	RHECIAT_CH0001102	-	hypothetical protein
1085	 68.27	+1	1110161..1110409	-	82	190890724	-	RHECIAT_CH0001103	-	hypothetical protein
1086	 61.56	0	1110433..1110726	+	97	190890725	-	RHECIAT_CH0001104	-	hypothetical protein
1087	 66.92	+1	1110757..1111146	-	129	190890726	-	RHECIAT_CH0001105	-	hypothetical protein
1088	 52.15	-2	1111221..1111406	-	61	190890727	-	RHECIAT_CH0001106	-	hypothetical protein
1089	 68.43	+1	1111475..1112380	+	301	190890728	-	RHECIAT_CH0001107	-	hypothetical protein
1090	 69.24	+2	1113366..1115111	-	581	190890729	-	RHECIAT_CH0001108	-	hypothetical protein
1091	 62.00	0	1115108..1115557	-	149	190890730	-	RHECIAT_CH0001109	-	hypothetical protein
1092	 67.83	+1	1115579..1116523	-	314	190890731	-	RHECIAT_CH0001110	-	probable beta-lactamase family protein
1093	 57.56	-1	1117160..1121134	+	1324	190890732	-	RHECIAT_CH0001112	-	putative helicase/DNA methylase hybrid protein
1094	 49.67	-2	1123785..1124084	+	99	190890733	-	RHECIAT_CH0001114	-	hypothetical protein
1095	 67.69	+1	1124154..1124933	-	259	190890734	-	RHECIAT_CH0001115	-	probable oxidoreducatse protein
1096	 70.05	+2	1124932..1125582	+	216	190890735	-	RHECIAT_CH0001116	-	hypothetical protein
1097	 53.41	-2	1125760..1126023	-	87	190890736	-	RHECIAT_CH0001117	-	hypothetical protein
1098	 68.45	+1	1126557..1127174	-	205	190890737	-	RHECIAT_CH0001118	-	probable transcriptional regulator protein, TetR family
1099	 69.14	+2	1127286..1127972	+	228	190890738	-	RHECIAT_CH0001119	-	putative negative regulator protein (suppresses sigma54-dependent transcription)
1100	 54.96	-1	1128019..1128300	+	93	190890739	-	RHECIAT_CH0001120	-	hypothetical protein
1101	 64.66	0	1128410..1131790	+	1126	190890740	aas	RHECIAT_CH0001121	-	long-chain-fatty-acid--[acyl-carrier-protein] ligase protein
1102	 66.15	+1	1132037..1132228	-	63	190890741	-	RHECIAT_CH0001122	-	hypothetical protein
1103	 66.08	+1	1132255..1133448	-	397	190890742	tetA	RHECIAT_CH0001123	-	tetracycline efflux transporter protein
1104	 60.31	0	1134206..1135936	+	576	190890743	-	RHECIAT_CH0001124	-	hypothetical protein
1105	 65.90	+1	1136006..1139128	+	1040	190890744	-	RHECIAT_CH0001125	-	probable phosphoglycerate dehydrogenase protein
1106	 64.71	0	1139554..1139961	-	135	190890745	-	RHECIAT_CH0001126	-	hypothetical protein
1107	 49.72	-2	1140491..1141192	-	233	190890746	-	RHECIAT_CH0001128	-	hypothetical protein
1108	 60.83	0	1141282..1141521	+	79	190890747	-	RHECIAT_CH0001129	-	hypothetical protein
1109	 63.68	0	1141548..1141781	-	77	190890748	-	RHECIAT_CH0001130	-	hypothetical protein
1110	 65.91	+1	1141787..1142050	-	87	190890749	-	RHECIAT_CH0001131	-	hypothetical protein
1111	 63.82	0	1142348..1142698	+	116	190890750	-	RHECIAT_CH0001132	-	hypothetical protein
1112	 63.89	0	1142855..1143502	-	215	190890751	-	RHECIAT_CH0001133	-	hypothetical protein
1113	 65.38	+1	1143586..1143819	+	77	190890752	-	RHECIAT_CH0001134	-	hypothetical protein
1114	 68.91	+2	1143958..1144314	+	118	190890753	-	RHECIAT_CH0001135	-	hypothetical protein
1115	 60.16	0	1144340..1144708	+	122	190890754	-	RHECIAT_CH0001136	-	hypothetical protein
1116	 66.95	+1	1144716..1145072	+	118	190890755	-	RHECIAT_CH0001137	-	hypothetical protein
1117	 66.16	+1	1145569..1146162	+	197	190890756	-	RHECIAT_CH0001139	-	hypothetical protein
1118	 62.77	0	1146380..1146841	+	153	190890757	-	RHECIAT_CH0001140	-	hypothetical conserved membrane protein
1119	 56.01	-1	1147067..1147507	-	146	190890758	-	RHECIAT_CH0001141	-	hypothetical protein
1120	 60.03	0	1147511..1148956	-	481	190890759	-	RHECIAT_CH0001142	-	hypothetical protein
1121	 64.10	0	1148982..1153028	-	1348	190890760	-	RHECIAT_CH0001143	-	hypothetical protein
1122	 62.67	0	1153484..1153984	+	166	190890761	-	RHECIAT_CH0001144	-	putative glutathione-dependent formaldehyde-activating protein
1123	 61.95	0	1154165..1156009	+	614	190890762	-	RHECIAT_CH0001145	-	probable Di- and tricarboxylate transporter protein
1124	 66.47	+1	1156090..1157619	-	509	190890763	-	RHECIAT_CH0001146	-	probable sulfate ABC transporter, permease protein
1125	 62.84	0	1157624..1158328	-	234	190890764	-	RHECIAT_CH0001147	-	probable carbonic anhydrase protein
1126	 65.71	+1	1158659..1159285	-	208	190890765	-	RHECIAT_CH0001148	-	putative SAM-dependent methyltransferase protein
1127	 57.96	-1	1159542..1160483	+	313	190890766	-	RHECIAT_CH0001149	-	hypothetical protein
1128	 55.39	-1	1160634..1160837	+	67	190890767	-	RHECIAT_CH0001150	-	hypothetical protein
1129	 60.94	0	1161150..1161341	+	63	190890768	-	RHECIAT_CH0001151	-	hypothetical protein
1130	 60.50	0	1161913..1163145	-	410	190890769	-	RHECIAT_CH0001152	-	putative beta-lactamase protein
1131	 62.24	0	1163442..1163960	-	172	190890770	-	RHECIAT_CH0001153	-	putative transporter, permease protein
1132	 58.80	0	1163991..1164206	-	71	190890771	-	RHECIAT_CH0001154	-	hypothetical protein
1133	 60.69	0	1164211..1164963	-	250	190890772	-	RHECIAT_CH0001155	-	hypothetical protein
1134	 55.45	-1	1165284..1165604	-	106	190890773	-	RHECIAT_CH0001156	-	hypothetical protein
1135	 55.21	-1	1165691..1165882	+	63	190890774	-	RHECIAT_CH0001157	-	hypothetical protein
1136	 62.58	0	1165942..1166994	+	350	190890775	-	RHECIAT_CH0001158	-	probable ATP-dependent DNA ligase protein
1137	 48.18	-2	1167007..1167309	-	100	190890776	-	RHECIAT_CH0001159	-	putative transmembrane protein
1138	 60.14	0	1167309..1167599	-	96	190890777	-	RHECIAT_CH0001160	-	hypothetical protein
1139	 61.11	0	1167623..1167964	-	113	190890778	-	RHECIAT_CH0001161	-	hypothetical protein
1140	 61.95	0	1168211..1169419	-	402	190890779	-	RHECIAT_CH0001162	-	probable transporter, permease protein
1141	 60.96	0	1169479..1170459	-	326	190890780	-	RHECIAT_CH0001163	-	probable transcriptional regulator protein, AraC family
1142	 60.08	0	1170640..1171170	+	176	190890781	-	RHECIAT_CH0001164	-	hypothetical protein
1143	 62.12	0	1171523..1172050	+	175	190890782	-	RHECIAT_CH0001165	-	putative cytochrome c protein
1144	 62.60	0	1172125..1173279	-	384	190890783	-	RHECIAT_CH0001166	-	putative polyhydroxybutyrate depolymerase protein
1145	 61.81	0	1173597..1173884	-	95	190890784	-	RHECIAT_CH0001167	-	hypothetical protein
1146	 61.80	0	1173948..1174214	+	88	190890785	-	RHECIAT_CH0001168	-	hypothetical protein
1147	 60.20	0	1174233..1174835	-	200	190890786	-	RHECIAT_CH0001169	-	hypothetical protein
1148	 62.99	0	1175035..1175442	+	135	190890787	-	RHECIAT_CH0001170	-	hypothetical protein
1149	 57.31	-1	1175693..1176034	+	113	190890788	-	RHECIAT_CH0001171	-	hypothetical conserved membrane protein
1150	 56.52	-1	1176255..1176530	-	91	190890789	-	RHECIAT_CH0001172	-	hypothetical protein
1151	 56.11	-1	1176554..1177993	+	479	190890790	-	RHECIAT_CH0001173	-	hypothetical protein
1152	 64.06	0	1178110..1178454	-	114	190890791	-	RHECIAT_CH0001174	-	probable transcriptional regulator protein, ArsR family
1153	 67.60	+1	1178561..1179307	+	248	190890792	-	RHECIAT_CH0001175	-	probable 3-oxoacyl-[acyl-carrier protein] reductase protein
1154	 60.42	0	1179447..1180262	+	271	190890793	-	RHECIAT_CH0001176	-	hypothetical protein
61.82	MEAN

3.47	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.