IslandPathversion 1.0

IslandPath Analysis: Rhizobium etli CFN 42



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 61.61 STD DEV: 3.19
Rhizobium etli CFN 42, complete genome - 1..4381608
4035 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
885	 63.25	0	956341..957159	-	272	86356554	-	RHE_CH00908	-	short chain dehydrogenase
886	 60.44	0	957245..957694	+	149	86356555	-	RHE_CH00909	-	putative transcriptional regulator protein
887	 66.43	+1	957746..958996	-	416	86356556	-	RHE_CH00910	-	RNA-methyltransferase protein
888	 67.87	+1	958993..959739	-	248	86356557	tlyA	RHE_CH00911	-	hemolysin protein
889	 64.66	0	960013..961956	+	647	86356558	mcpU	RHE_CH00912	-	methyl-accepting chemotaxis protein
890	 65.88	+1	962175..964091	-	638	86356559	dxs	RHE_CH00913	-	1-deoxy-D-xylulose-5-phosphate synthase
891	 63.53	0	964340..965263	-	307	86356560	-	RHE_CH00914	-	hypothetical protein
892	 65.27	+1	965323..966036	+	237	86356561	-	RHE_CH00915	-	putative oxidoreductase protein
893	 63.10	0	966190..966441	-	83	86356562	-	RHE_CH00916	-	exodeoxyribonuclease VII small subunit
894	 63.57	0	966444..967379	-	311	86356563	-	RHE_CH00917	-	deacetylase protein
895	 59.95	0	967568..967969	+	133	86356564	-	RHE_CH00918	-	putative thioesterase protein
896	 62.37	0	967977..968627	-	216	86356565	matR	RHE_CH00919	-	AsnC/GntR family transcriptional regulator
897	 63.02	0	968786..970210	+	474	86356566	matA	RHE_CH00920	-	malonyl-CoA decarboxylase protein
898	 63.25	0	970231..971721	+	496	86356567	matB	RHE_CH00921	-	malonyl-CoA synthase
899	 62.07	0	971815..973164	+	449	86356568	matC	RHE_CH00922	-	dicarboxylate-carrier protein
900	 59.06	0	973433..974497	+	354	86356569	-	RHE_CH00923	-	LuxR family transcriptional regulator
901	 55.81	-1	974547..974933	-	128	86356570	ectC	RHE_CH00924	-	L-ectoine synthase
902	 60.00	0	975113..975997	+	294	86356571	-	RHE_CH00925	-	LysR family transcriptional regulator
903	 62.21	0	976098..976568	-	156	86356572	-	RHE_CH00926	-	hypothetical protein
904	 59.65	0	977113..978252	+	379	86356573	-	RHE_CH00927	-	putative acetyltransferase protein
905	 68.09	+2	978454..979017	-	187	86356574	bioY	RHE_CH00928	-	biotin transporter protein
906	 64.86	+1	979042..979650	-	202	86356575	bioN	RHE_CH00929	-	biotin transporter, permease protein
907	 66.07	+1	979650..980324	-	224	86356576	bioM	RHE_CH00930	-	biotin transporter, ATP-binding protein
908	 63.14	0	980670..981860	+	396	86356577	-	RHE_CH00931	-	hypothetical protein
909	 59.59	0	982198..983130	-	310	86356578	-	RHE_CH00932	-	hypothetical protein
910	 66.77	+1	983275..984273	+	332	86356579	-	RHE_CH00933	-	LysR family transcriptional regulator
911	 64.02	0	984640..985848	+	402	86356580	ribA	RHE_CH00934	-	GTP cyclohydrolase/3,4-dihydroxy-2-butanone 4-phosphate synthase bi-functional protein (ribofalvinbiosynthesis)
912	 64.75	0	985809..986906	-	365	86356581	aroC	RHE_CH00935	-	chorismate synthase
913	 56.70	-1	987259..987519	+	86	86356582	-	RHE_CH00936	-	hypothetical protein
914	 64.97	+1	987553..988143	-	196	86356583	gpmB	RHE_CH00937	-	phosphoglycerate mutase protein
915	 59.34	0	988164..988982	-	272	86356584	fabI2	RHE_CH00938	-	enoyl-(acyl carrier protein) reductase
916	 64.64	0	989104..990288	-	394	86356585	dnaJ2	RHE_CH00939	-	DnaJ family molecular chaperone
917	 62.96	0	990629..991087	-	152	86356586	-	RHE_CH00940	-	hypothetical protein
918	 60.87	0	991153..991773	+	206	86356587	pdxH	RHE_CH00941	-	pyridoxamine 5'-phosphate oxidase
919	 65.72	+1	991779..992729	-	316	86356588	-	RHE_CH00942	-	hypothetical protein
920	 59.45	0	992701..993102	+	133	86356589	-	RHE_CH00943	-	hypothetical protein
921	 65.40	+1	993053..994312	+	419	86356590	dacF1	RHE_CH00944	-	D-alanyl-D-alanine carboxypeptidase protein
922	 63.84	0	994389..994706	+	105	86356591	-	RHE_CH00945	-	hypothetical protein
923	 61.44	0	994752..995765	-	337	86356592	pit	RHE_CH00946	-	phosphate transporter protein
924	 56.85	-1	995765..996406	-	213	86356593	-	RHE_CH00947	-	phosphate transporter
925	 58.01	-1	996622..997164	+	180	86356594	-	RHE_CH00948	-	MutT/NUDIX family NTP pyrophosphohydrolase
926	 62.80	0	997208..997699	-	163	86356595	-	RHE_CH00949	-	acetyltransferase protein
927	 65.54	+1	997714..999129	-	471	86356596	tldD	RHE_CH00950	-	Zn-dependent protease protein
928	 64.91	+1	999528..1000322	-	264	86356597	-	RHE_CH00951	-	hypothetical protein
929	 61.36	0	1000665..1001549	+	294	86356598	ctaC	RHE_CH00952	-	cytochrome-c oxidase, subunit II protein
930	 61.43	0	1001567..1003267	+	566	86356599	ctaD	RHE_CH00953	-	cytochrome-c oxidase, subunit I protein
931	 63.09	0	1003334..1004284	+	316	86356600	ctaB	RHE_CH00954	-	protoheme IX farnesyltransferase
932	 58.13	-1	1004421..1005029	+	202	86356601	ctaG	RHE_CH00955	-	cytochrome C oxidase assembly protein
933	 61.66	0	1005090..1005968	+	292	86356602	ctaE	RHE_CH00956	-	cytochrome-c oxidase, subunit III protein
934	 55.68	-1	1006001..1006546	+	181	86356603	-	RHE_CH00957	-	hypothetical protein
935	 62.93	0	1007024..1007665	-	213	86356604	-	RHE_CH00958	-	chloranphenicol phosphotransferase protein
936	 60.37	0	1007784..1008164	+	126	86356605	-	RHE_CH00959	-	hypothetical protein
937	 63.85	0	1008202..1008912	+	236	86356606	-	RHE_CH00960	-	putative cytochrome oxidase complex biogenesis factor transmembrane protein
938	 63.92	0	1009136..1010155	+	339	86356607	ispH	RHE_CH00961	-	4-hydroxy-3-methylbut-2-enyl diphosphate reductase
939	 61.39	0	1010211..1011176	+	321	86356608	thrB	RHE_CH00962	-	homoserine kinase
940	 61.84	0	1011173..1011628	+	151	86356609	rnhA	RHE_CH00963	-	ribonuclease H
941	 63.21	0	1012218..1013288	-	356	86356610	-	RHE_CH00964	-	hypothetical protein
942	 63.02	0	1013375..1013566	-	63	86356611	-	RHE_CH00965	-	hypothetical protein
943	 62.71	0	1013685..1014290	-	201	86356612	-	RHE_CH00966	-	hypothetical protein
944	 65.17	+1	1014467..1015270	+	267	86356613	-	RHE_CH00967	-	hypothetical protein
945	 64.81	+1	1015353..1015838	+	161	86356614	-	RHE_CH00968	-	peroxiredoxin protein
946	 66.80	+1	1016476..1017225	+	249	86356615	-	RHE_CH00969	-	zinc ABC transporter ATP-binding protein
947	 66.44	+1	1017222..1018094	+	290	86356616	-	RHE_CH00970	-	zinc ABC transporter permease
948	 61.78	0	1018111..1019010	+	299	86356617	-	RHE_CH00971	-	zinc ABC transporter substrate-binding protein
949	 61.47	0	1019192..1019884	-	230	86356618	-	RHE_CH00972	-	molybdate ABC transporter substrate-binding protein
950	 58.90	0	1019908..1020216	-	102	86356619	-	RHE_CH00973	-	hypothetical protein
951	 62.86	0	1020324..1022504	-	726	86356620	mcpX2	RHE_CH00974	-	methyl-accepting chemotaxis protein
952	 62.08	0	1022833..1023312	-	159	86356621	-	RHE_CH00975	-	hypothetical protein
953	 65.46	+1	1023370..1026267	-	965	86356622	-	RHE_CH00976	-	putative sensory box/GGDEF family protein
954	 59.84	0	1026279..1026893	-	204	86356623	rimJ	RHE_CH00977	-	alanine acetyltransferase (ribosomal) protein
955	 64.04	0	1026922..1028217	-	431	86356624	-	RHE_CH00978	-	processing protease protein
956	 63.23	0	1028221..1029645	-	474	86356625	thrC	RHE_CH00979	-	threonine synthase
957	 65.27	+1	1029911..1030555	+	214	86356626	-	RHE_CH00980	-	hypothetical protein
958	 64.10	0	1030599..1031417	-	272	86356627	-	RHE_CH00981	-	cytochrome-c protein
959	 61.46	0	1031417..1032952	-	511	86356628	-	RHE_CH00982	-	cytochrome-c oxidase, subunit I protein
960	 62.72	0	1033029..1033586	-	185	86356629	-	RHE_CH00983	-	cytochrome-c oxidase, subunit II protein
961	 62.59	0	1033761..1035011	-	416	86356630	-	RHE_CH00984	-	cytochrome-c oxidase protein
962	 66.11	+1	1035014..1035727	-	237	86356631	-	RHE_CH00985	-	cytochrome-c oxidase protein
963	 63.62	0	1036045..1036734	-	229	86356632	-	RHE_CH00986	-	hydrolase phosphatase protein
964	 64.86	+1	1036892..1038277	-	461	86356633	-	RHE_CH00987	-	multidrug ABC transporter
965	 63.55	0	1038395..1039291	+	298	86356634	-	RHE_CH00988	-	LysR family transcriptional regulator
966	 63.29	0	1039404..1039847	-	147	86356635	-	RHE_CH00989	-	hypothetical protein
967	 62.03	0	1039857..1040201	-	114	86356636	-	RHE_CH00990	-	hypothetical protein
968	 70.73	+2	1040253..1040720	-	155	86356637	-	RHE_CH00991	-	hypothetical protein
969	 67.98	+1	1040948..1041634	-	228	86356638	-	RHE_CH00992	-	ArsR family transcriptional regulator
970	 60.30	0	1041705..1042034	+	109	86356639	-	RHE_CH00993	-	hypothetical protein
971	 63.25	0	1042031..1042381	+	116	86356640	-	RHE_CH00994	-	hypothetical protein
972	 62.29	0	1042499..1043641	+	380	86356641	ccrM	RHE_CH00995	-	site-specific DNA-methyltransferase (adenine-specific) protein
973	 59.67	0	1044110..1044724	-	204	86356642	-	RHE_CH00996	-	hydrolase protein
974	 64.13	0	1044727..1045830	-	367	86356643	mutY	RHE_CH00997	-	A/G-specific adenine glycosylase protein
975	 67.03	+1	1045873..1046424	+	183	86356644	-	RHE_CH00998	-	hypothetical protein
976	 60.51	0	1047009..1047788	+	259	86356645	-	RHE_CH00999	-	putative thiol-disulfide oxidoreductase protein
977	 68.46	+2	1047892..1051353	+	1153	86356646	smc	RHE_CH01000	-	chromosome partition protein
978	 65.75	+1	1051359..1052012	-	217	86356647	gstch4	RHE_CH01001	-	glutathione S-transferase protein
979	 55.67	-1	1052086..1052685	-	199	86356648	-	RHE_CH01002	-	hypothetical protein
980	 65.39	+1	1052894..1055560	+	888	86356649	ppdK	RHE_CH01003	-	pyruvate phosphate dikinase
981	 64.85	+1	1055570..1056118	-	182	86356650	-	RHE_CH01004	-	hypothetical protein
982	 59.02	0	1056476..1056802	+	108	86356651	-	RHE_CH01005	-	hypothetical protein
983	 67.95	+1	1056889..1057278	-	129	86356652	-	RHE_CH01006	-	hypothetical protein
984	 66.89	+1	1057622..1058527	+	301	86356653	-	RHE_CH01007	-	hypothetical protein
61.61	MEAN

3.19	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.