IslandPath Analysis: Rhizobium etli CFN 42



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 61.61   STD DEV: 3.19
Rhizobium etli CFN 42, complete genome - 1..4381608
4035 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
837	 59.47	0	901467..902453	+	328	86356506	corAch	RHE_CH00860	-	magnesium/cobalt transporter protein
838	 62.40	0	902472..904370	+	632	86356507	kupch1	RHE_CH00861	-	potassium transporter protein
839	 63.52	0	904671..905846	+	391	86356508	-	RHE_CH00862	-	putative cell wall hydrolase protein involved in spore germination
840	 59.29	0	906117..906455	+	112	86356509	atpI	RHE_CH00863	-	ATP synthase protein, subunit I
841	 57.10	-1	906518..907270	+	250	86356510	atpB	RHE_CH00864	-	F0F1 ATP synthase subunit A
842	 60.96	0	907339..907566	+	75	86356511	atpE	RHE_CH00865	-	F0F1 ATP synthase subunit C
843	 65.87	+1	907644..908267	+	207	86356512	atpF1	RHE_CH00866	-	F0F1 ATP synthase subunit B'
844	 62.80	0	908271..908762	+	163	86356513	atpF2	RHE_CH00867	-	F0F1 ATP synthase subunit B
845	 66.52	+1	909201..909890	-	229	86356514	rnhB	RHE_CH00868	-	ribonuclease HII
846	 64.34	0	910058..911215	-	385	86356515	-	RHE_CH00869	-	hypothetical protein
847	 63.97	0	911355..911873	+	172	86356516	-	RHE_CH00870	-	putative glycosyltransferase protein
848	 59.52	0	912273..912608	+	111	86356517	-	RHE_CH00871	-	hypothetical protein
849	 63.41	0	912689..913240	-	183	86356518	moaB	RHE_CH00872	-	molybdenum cofactor biosynthesis protein
850	 68.36	+2	913240..914124	-	294	86356519	ispE	RHE_CH00873	-	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase protein
851	 63.78	0	914137..915969	-	610	86356520	-	RHE_CH00874	-	hypothetical protein
852	 63.02	0	916101..917141	-	346	86356521	ispB	RHE_CH00875	-	octaprenyl-diphosphate synthase protein
853	 64.91	+1	917226..917453	+	75	86356522	-	RHE_CH00876	-	hypothetical protein
854	 64.12	0	917551..918258	+	235	86356523	-	RHE_CH00877	-	putative methyltransferase protein
855	 63.83	0	918248..919588	-	446	86356524	mntH	RHE_CH00878	-	manganese transport protein MntH
856	 62.95	0	919771..920631	+	286	86356525	sohB	RHE_CH00879	-	protease protein
857	 59.90	0	920650..920841	+	63	86356526	-	RHE_CH00880	-	hypothetical protein
858	 62.80	0	921168..922124	+	318	86356527	glyQ	RHE_CH00881	-	glycyl-tRNA synthetase subunit alpha
859	 61.41	0	922121..922672	+	183	86356528	-	RHE_CH00882	-	hypothetical protein
860	 61.78	0	922734..923285	+	183	86356529	-	RHE_CH00883	-	hypothetical protein
861	 65.72	+1	923481..924743	+	420	86356530	aroA	RHE_CH00884	-	3-phosphoshikimate 1-carboxyvinyltransferase protein
862	 62.73	0	924783..926714	+	643	86356531	-	RHE_CH00885	-	hypothetical protein
863	 65.81	+1	926781..928064	+	427	86356532	purD	RHE_CH00886	-	phosphoribosylamine--glycine ligase
864	 64.29	0	928158..928619	+	153	86356533	-	RHE_CH00887	-	hypothetical protein
865	 61.94	0	928944..930869	+	641	86356534	mcpV2	RHE_CH00888	-	methyl-accepting chemotaxis protein
866	 67.28	+1	931005..931493	-	162	86356535	-	RHE_CH00889	-	hypothetical protein
867	 64.82	+1	931735..933849	-	704	86356536	glyS	RHE_CH00890	-	glycyl-tRNA synthetase subunit beta
868	 65.80	+1	934096..936405	+	769	86356537	-	RHE_CH00891	-	transcriptional accessory protein
869	 59.76	0	936539..937798	+	419	86356538	cfa	RHE_CH00892	-	cyclopropane-fatty-acyl-phospholipid synthase protein
870	 68.21	+2	937833..938414	+	193	86356539	-	RHE_CH00893	-	phosphoglycerate mutase protein
871	 61.99	0	938723..939535	+	270	86356540	-	RHE_CH00894	-	hypothetical protein
872	 62.08	0	939652..940611	+	319	86356541	ubiA	RHE_CH00895	-	prenyltransferase
873	 66.14	+1	940694..941260	-	188	86356542	-	RHE_CH00896	-	hypothetical protein
874	 59.83	0	941562..944894	+	1110	86356543	-	RHE_CH00897	-	hypothetical protein
875	 64.71	0	945008..946441	-	477	86356544	-	RHE_CH00898	-	FAD-dependent oxidoreductase protein
876	 67.66	+1	946469..947479	-	336	86356545	-	RHE_CH00899	-	translation factor sua5 protein
877	 61.25	0	947518..948126	-	202	86356546	-	RHE_CH00900	-	hypothetical protein
878	 61.12	0	948530..949774	+	414	86356547	-	RHE_CH00901	-	dioxygenase protein
879	 64.25	0	949927..950382	+	151	86356548	-	RHE_CH00902	-	hypothetical protein
880	 58.45	0	950645..951058	+	137	86356549	-	RHE_CH00903	-	hypothetical protein
881	 62.05	0	951442..952437	-	331	86356550	-	RHE_CH00904	-	magnesium/cobalt transporter CorA
882	 66.05	+1	952645..954426	+	593	86356551	-	RHE_CH00905	-	acyl-CoA dehydrogenase protein
883	 64.67	0	954456..955208	+	250	86356552	-	RHE_CH00906	-	enoyl-CoA hydratase
884	 62.59	0	955258..956262	-	334	86356553	-	RHE_CH00907	-	hypothetical protein
885	 63.25	0	956341..957159	-	272	86356554	-	RHE_CH00908	-	short chain dehydrogenase
886	 60.44	0	957245..957694	+	149	86356555	-	RHE_CH00909	-	putative transcriptional regulator protein
887	 66.43	+1	957746..958996	-	416	86356556	-	RHE_CH00910	-	RNA-methyltransferase protein
888	 67.87	+1	958993..959739	-	248	86356557	tlyA	RHE_CH00911	-	hemolysin protein
889	 64.66	0	960013..961956	+	647	86356558	mcpU	RHE_CH00912	-	methyl-accepting chemotaxis protein
890	 65.88	+1	962175..964091	-	638	86356559	dxs	RHE_CH00913	-	1-deoxy-D-xylulose-5-phosphate synthase
891	 63.53	0	964340..965263	-	307	86356560	-	RHE_CH00914	-	hypothetical protein
892	 65.27	+1	965323..966036	+	237	86356561	-	RHE_CH00915	-	putative oxidoreductase protein
893	 63.10	0	966190..966441	-	83	86356562	-	RHE_CH00916	-	exodeoxyribonuclease VII small subunit
894	 63.57	0	966444..967379	-	311	86356563	-	RHE_CH00917	-	deacetylase protein
895	 59.95	0	967568..967969	+	133	86356564	-	RHE_CH00918	-	putative thioesterase protein
896	 62.37	0	967977..968627	-	216	86356565	matR	RHE_CH00919	-	AsnC/GntR family transcriptional regulator
897	 63.02	0	968786..970210	+	474	86356566	matA	RHE_CH00920	-	malonyl-CoA decarboxylase protein
898	 63.25	0	970231..971721	+	496	86356567	matB	RHE_CH00921	-	malonyl-CoA synthase
899	 62.07	0	971815..973164	+	449	86356568	matC	RHE_CH00922	-	dicarboxylate-carrier protein
900	 59.06	0	973433..974497	+	354	86356569	-	RHE_CH00923	-	LuxR family transcriptional regulator
901	 55.81	-1	974547..974933	-	128	86356570	ectC	RHE_CH00924	-	L-ectoine synthase
902	 60.00	0	975113..975997	+	294	86356571	-	RHE_CH00925	-	LysR family transcriptional regulator
903	 62.21	0	976098..976568	-	156	86356572	-	RHE_CH00926	-	hypothetical protein
904	 59.65	0	977113..978252	+	379	86356573	-	RHE_CH00927	-	putative acetyltransferase protein
905	 68.09	+2	978454..979017	-	187	86356574	bioY	RHE_CH00928	-	biotin transporter protein
906	 64.86	+1	979042..979650	-	202	86356575	bioN	RHE_CH00929	-	biotin transporter, permease protein
907	 66.07	+1	979650..980324	-	224	86356576	bioM	RHE_CH00930	-	biotin transporter, ATP-binding protein
908	 63.14	0	980670..981860	+	396	86356577	-	RHE_CH00931	-	hypothetical protein
909	 59.59	0	982198..983130	-	310	86356578	-	RHE_CH00932	-	hypothetical protein
910	 66.77	+1	983275..984273	+	332	86356579	-	RHE_CH00933	-	LysR family transcriptional regulator
911	 64.02	0	984640..985848	+	402	86356580	ribA	RHE_CH00934	-	GTP cyclohydrolase/3,4-dihydroxy-2-butanone 4-phosphate synthase bi-functional protein (ribofalvinbiosynthesis)
912	 64.75	0	985809..986906	-	365	86356581	aroC	RHE_CH00935	-	chorismate synthase
913	 56.70	-1	987259..987519	+	86	86356582	-	RHE_CH00936	-	hypothetical protein
914	 64.97	+1	987553..988143	-	196	86356583	gpmB	RHE_CH00937	-	phosphoglycerate mutase protein
915	 59.34	0	988164..988982	-	272	86356584	fabI2	RHE_CH00938	-	enoyl-(acyl carrier protein) reductase
916	 64.64	0	989104..990288	-	394	86356585	dnaJ2	RHE_CH00939	-	DnaJ family molecular chaperone
917	 62.96	0	990629..991087	-	152	86356586	-	RHE_CH00940	-	hypothetical protein
918	 60.87	0	991153..991773	+	206	86356587	pdxH	RHE_CH00941	-	pyridoxamine 5'-phosphate oxidase
919	 65.72	+1	991779..992729	-	316	86356588	-	RHE_CH00942	-	hypothetical protein
920	 59.45	0	992701..993102	+	133	86356589	-	RHE_CH00943	-	hypothetical protein
921	 65.40	+1	993053..994312	+	419	86356590	dacF1	RHE_CH00944	-	D-alanyl-D-alanine carboxypeptidase protein
922	 63.84	0	994389..994706	+	105	86356591	-	RHE_CH00945	-	hypothetical protein
923	 61.44	0	994752..995765	-	337	86356592	pit	RHE_CH00946	-	phosphate transporter protein
924	 56.85	-1	995765..996406	-	213	86356593	-	RHE_CH00947	-	phosphate transporter
925	 58.01	-1	996622..997164	+	180	86356594	-	RHE_CH00948	-	MutT/NUDIX family NTP pyrophosphohydrolase
926	 62.80	0	997208..997699	-	163	86356595	-	RHE_CH00949	-	acetyltransferase protein
927	 65.54	+1	997714..999129	-	471	86356596	tldD	RHE_CH00950	-	Zn-dependent protease protein
928	 64.91	+1	999528..1000322	-	264	86356597	-	RHE_CH00951	-	hypothetical protein
929	 61.36	0	1000665..1001549	+	294	86356598	ctaC	RHE_CH00952	-	cytochrome-c oxidase, subunit II protein
930	 61.43	0	1001567..1003267	+	566	86356599	ctaD	RHE_CH00953	-	cytochrome-c oxidase, subunit I protein
931	 63.09	0	1003334..1004284	+	316	86356600	ctaB	RHE_CH00954	-	protoheme IX farnesyltransferase
932	 58.13	-1	1004421..1005029	+	202	86356601	ctaG	RHE_CH00955	-	cytochrome C oxidase assembly protein
933	 61.66	0	1005090..1005968	+	292	86356602	ctaE	RHE_CH00956	-	cytochrome-c oxidase, subunit III protein
934	 55.68	-1	1006001..1006546	+	181	86356603	-	RHE_CH00957	-	hypothetical protein
935	 62.93	0	1007024..1007665	-	213	86356604	-	RHE_CH00958	-	chloranphenicol phosphotransferase protein
936	 60.37	0	1007784..1008164	+	126	86356605	-	RHE_CH00959	-	hypothetical protein
61.61	MEAN

3.19	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.