IslandPath Analysis: Rhizobium etli CFN 42



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 61.61   STD DEV: 3.19
Rhizobium etli CFN 42, complete genome - 1..4381608
4035 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
773	 63.95	0	834800..835684	-	294	86356442	-	RHE_CH00796	-	LysR family transcriptional regulator
774	 60.58	0	835810..836565	+	251	86356443	-	RHE_CH00797	-	dehydrogenase protein
775	 61.15	0	836669..837085	+	138	86356444	-	RHE_CH00798	-	hypothetical protein
776	 60.59	0	837503..838144	+	213	86356445	-	RHE_CH00799	-	TetR family transcriptional regulator
777	 63.95	0	838153..839109	-	318	86356446	-	RHE_CH00800	-	LysR family transcriptional regulator
778	 61.33	0	839315..839614	+	99	86356447	-	RHE_CH00801	-	hypothetical protein
779	 60.44	0	839700..840566	-	288	86356448	-	RHE_CH00802	-	hypothetical protein
780	 62.52	0	840665..842038	-	457	86356449	gsh	RHE_CH00803	-	glutamate-cysteine ligase protein
781	 64.91	+1	842184..842921	-	245	86356450	-	RHE_CH00804	-	hypothetical protein
782	 64.67	0	842938..844437	-	499	86356451	-	RHE_CH00805	-	phosphate ABC transporter permease
783	 59.02	0	844500..845009	-	169	86356452	-	RHE_CH00806	-	MutT/NUDIX family NTP pyrophosphohydrolase
784	 63.66	0	845367..846263	-	298	86356453	-	RHE_CH00807	-	LysR family transcriptional regulator
785	 65.62	+1	846404..847843	+	479	86356454	glcD	RHE_CH00808	-	glycolate oxidase subunit D protein
786	 66.42	+1	847840..849039	+	399	86356455	glcE	RHE_CH00809	-	glycolate oxidase subunit E protein
787	 64.76	0	849291..850601	+	436	86356456	glcF	RHE_CH00810	-	glycolate oxidase subunit F protein
788	 61.68	0	850648..851088	+	146	86356457	-	RHE_CH00811	-	hypothetical protein
789	 60.44	0	851211..851885	-	224	86356458	lpxQ	RHE_CH00812	-	lipid A oxidase (involved in formation of 2-aminogluconate) protein
790	 62.91	0	852008..852700	-	230	86356459	-	RHE_CH00813	-	hypothetical protein
791	 65.47	+1	852938..853687	-	249	86356460	-	RHE_CH00814	-	hypothetical protein
792	 61.43	0	853917..854546	+	209	86356461	tag	RHE_CH00815	-	DNA-3-methyladenine glycosylase I protein
793	 60.08	0	854543..855043	+	166	86356462	-	RHE_CH00816	-	hypothetical protein
794	 61.84	0	855055..855759	-	234	86356463	-	RHE_CH00817	-	putative hydrolase, haloacid dehalogenase-like family protein
795	 63.14	0	855997..857046	+	349	86356464	-	RHE_CH00818	-	oxidoreductase protein
796	 58.16	-1	857148..858980	-	610	86356465	-	RHE_CH00819	-	hypothetical protein
797	 64.67	0	859437..860186	-	249	86356466	-	RHE_CH00820	-	hypothetical protein
798	 63.65	0	860188..861846	+	552	86356467	hisS	RHE_CH00821	-	histidyl-tRNA synthetase
799	 64.26	0	862078..863199	+	373	86356468	hisZ	RHE_CH00822	-	ATP phosphoribosyltransferase regulatory subunit
800	 63.65	0	863196..863891	+	231	86356469	hisG	RHE_CH00823	-	ATP phosphoribosyltransferase catalytic subunit
801	 63.24	0	863970..864407	-	145	86356470	-	RHE_CH00824	-	hypothetical protein
802	 58.65	0	864620..865330	+	236	86356471	gstch3	RHE_CH00825	-	glutathione S-transferase protein
803	 59.26	0	865609..866013	-	134	86356472	-	RHE_CH00826	-	hypothetical protein
804	 58.16	-1	866270..866704	+	144	86356473	-	RHE_CH00827	-	hypothetical protein
805	 61.60	0	866761..868398	-	545	86356474	groEL	RHE_CH00828	-	chaperonin GroEL
806	 60.27	0	868469..868765	-	98	86356475	groES	RHE_CH00829	-	co-chaperonin GroES
807	 64.78	0	869088..869936	+	282	86356476	-	RHE_CH00830	-	putative hydrolase, haloacid dehalogenase-like family protein
808	 62.91	0	869951..870934	+	327	86356477	ribF	RHE_CH00831	-	bifunctional riboflavin kinase/FMN adenylyltransferase
809	 62.57	0	871218..874124	+	968	86356478	ileS	RHE_CH00832	-	isoleucyl-tRNA synthetase
810	 64.76	0	874256..874885	+	209	86356479	-	RHE_CH00833	-	hypothetical protein
811	 65.51	+1	874995..875426	-	143	86356480	codAch1	RHE_CH00834	-	cytosine deaminase protein
812	 67.94	+1	875523..877409	+	628	86356481	rluB	RHE_CH00835	-	pseudouridylate synthase, subunit B protein
813	 62.75	0	877390..877950	+	186	86356482	-	RHE_CH00836	-	putative methylase protein
814	 63.27	0	877964..878845	+	293	86356483	-	RHE_CH00837	-	hypothetical protein
815	 60.33	0	878834..879322	-	162	86356484	-	RHE_CH00838	-	hypothetical protein
816	 63.44	0	879326..879697	-	123	86356485	-	RHE_CH00839	-	putative glyoxalase protein
817	 64.81	+1	879809..881527	-	572	86356486	kefB	RHE_CH00840	-	glutathione-regulated potassium-efflux transporter protein
818	 63.47	0	881743..883089	+	448	86356487	pmbA	RHE_CH00841	-	modulator of DNA gyrase protein
819	 65.56	+1	883119..883928	+	269	86356488	-	RHE_CH00842	-	inositol monophosphatase protein
820	 57.03	-1	883991..884239	+	82	86356489	-	RHE_CH00843	-	hypothetical protein
821	 63.71	0	884397..885716	+	439	86356490	kdtA	RHE_CH00844	-	3-deoxy-D-manno-octulosonic-acid transferase
822	 63.76	0	885726..886448	+	240	86356491	-	RHE_CH00845	-	phosphoglycolate phosphatase protein
823	 65.23	+1	886539..887579	+	346	86356492	lpxK	RHE_CH00846	-	tetraacyldisaccharide 4'-kinase
824	 60.61	0	887576..887806	-	76	86356493	-	RHE_CH00847	-	hypothetical protein
825	 66.61	+1	887874..889706	-	610	86356494	mutL	RHE_CH00848	-	DNA mismatch repair protein
826	 60.83	0	889889..891619	+	576	86356495	-	RHE_CH00849	-	two-component sensor histidine kinase protein
827	 62.27	0	891741..893150	+	469	86356496	-	RHE_CH00850	-	putative sensory box/GGDEF family protein
828	 61.55	0	893311..893916	-	201	86356497	-	RHE_CH00851	-	hypothetical protein
829	 63.18	0	894137..895024	-	295	86356498	-	RHE_CH00852	-	gluconolactonase protein (calcium-binding regucalcin-like)
830	 64.77	0	895029..895661	-	210	86356499	kdgA	RHE_CH00853	-	2-dehydro-3-deoxy-6-phosphogalactonate aldolase
831	 67.21	+1	895675..896592	-	305	86356500	dgoK	RHE_CH00854	-	2-dehydro-3-deoxygalactonokinase protein
832	 63.94	0	896592..897362	-	256	86356501	fabG1	RHE_CH00855	-	3-oxoacyl-(acyl carrier protein) reductase protein
833	 65.03	+1	897493..898287	+	264	86356502	-	RHE_CH00856	-	IclR family transcriptional regulator
834	 59.71	0	898497..899243	+	248	86356503	-	RHE_CH00857	-	LuxR family transcriptional regulator
835	 58.60	0	899391..899861	+	156	86356504	-	RHE_CH00858	-	hypothetical protein
836	 65.38	+1	899858..901027	+	389	86356505	-	RHE_CH00859	-	ATP-binding protein (Mrp protein-like)
837	 59.47	0	901467..902453	+	328	86356506	corAch	RHE_CH00860	-	magnesium/cobalt transporter protein
838	 62.40	0	902472..904370	+	632	86356507	kupch1	RHE_CH00861	-	potassium transporter protein
839	 63.52	0	904671..905846	+	391	86356508	-	RHE_CH00862	-	putative cell wall hydrolase protein involved in spore germination
840	 59.29	0	906117..906455	+	112	86356509	atpI	RHE_CH00863	-	ATP synthase protein, subunit I
841	 57.10	-1	906518..907270	+	250	86356510	atpB	RHE_CH00864	-	F0F1 ATP synthase subunit A
842	 60.96	0	907339..907566	+	75	86356511	atpE	RHE_CH00865	-	F0F1 ATP synthase subunit C
843	 65.87	+1	907644..908267	+	207	86356512	atpF1	RHE_CH00866	-	F0F1 ATP synthase subunit B'
844	 62.80	0	908271..908762	+	163	86356513	atpF2	RHE_CH00867	-	F0F1 ATP synthase subunit B
845	 66.52	+1	909201..909890	-	229	86356514	rnhB	RHE_CH00868	-	ribonuclease HII
846	 64.34	0	910058..911215	-	385	86356515	-	RHE_CH00869	-	hypothetical protein
847	 63.97	0	911355..911873	+	172	86356516	-	RHE_CH00870	-	putative glycosyltransferase protein
848	 59.52	0	912273..912608	+	111	86356517	-	RHE_CH00871	-	hypothetical protein
849	 63.41	0	912689..913240	-	183	86356518	moaB	RHE_CH00872	-	molybdenum cofactor biosynthesis protein
850	 68.36	+2	913240..914124	-	294	86356519	ispE	RHE_CH00873	-	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase protein
851	 63.78	0	914137..915969	-	610	86356520	-	RHE_CH00874	-	hypothetical protein
852	 63.02	0	916101..917141	-	346	86356521	ispB	RHE_CH00875	-	octaprenyl-diphosphate synthase protein
853	 64.91	+1	917226..917453	+	75	86356522	-	RHE_CH00876	-	hypothetical protein
854	 64.12	0	917551..918258	+	235	86356523	-	RHE_CH00877	-	putative methyltransferase protein
855	 63.83	0	918248..919588	-	446	86356524	mntH	RHE_CH00878	-	manganese transport protein MntH
856	 62.95	0	919771..920631	+	286	86356525	sohB	RHE_CH00879	-	protease protein
857	 59.90	0	920650..920841	+	63	86356526	-	RHE_CH00880	-	hypothetical protein
858	 62.80	0	921168..922124	+	318	86356527	glyQ	RHE_CH00881	-	glycyl-tRNA synthetase subunit alpha
859	 61.41	0	922121..922672	+	183	86356528	-	RHE_CH00882	-	hypothetical protein
860	 61.78	0	922734..923285	+	183	86356529	-	RHE_CH00883	-	hypothetical protein
861	 65.72	+1	923481..924743	+	420	86356530	aroA	RHE_CH00884	-	3-phosphoshikimate 1-carboxyvinyltransferase protein
862	 62.73	0	924783..926714	+	643	86356531	-	RHE_CH00885	-	hypothetical protein
863	 65.81	+1	926781..928064	+	427	86356532	purD	RHE_CH00886	-	phosphoribosylamine--glycine ligase
864	 64.29	0	928158..928619	+	153	86356533	-	RHE_CH00887	-	hypothetical protein
865	 61.94	0	928944..930869	+	641	86356534	mcpV2	RHE_CH00888	-	methyl-accepting chemotaxis protein
866	 67.28	+1	931005..931493	-	162	86356535	-	RHE_CH00889	-	hypothetical protein
867	 64.82	+1	931735..933849	-	704	86356536	glyS	RHE_CH00890	-	glycyl-tRNA synthetase subunit beta
868	 65.80	+1	934096..936405	+	769	86356537	-	RHE_CH00891	-	transcriptional accessory protein
869	 59.76	0	936539..937798	+	419	86356538	cfa	RHE_CH00892	-	cyclopropane-fatty-acyl-phospholipid synthase protein
870	 68.21	+2	937833..938414	+	193	86356539	-	RHE_CH00893	-	phosphoglycerate mutase protein
871	 61.99	0	938723..939535	+	270	86356540	-	RHE_CH00894	-	hypothetical protein
872	 62.08	0	939652..940611	+	319	86356541	ubiA	RHE_CH00895	-	prenyltransferase
61.61	MEAN

3.19	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.