IslandPath Analysis: Rhizobium etli CFN 42



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 61.61   STD DEV: 3.19
Rhizobium etli CFN 42, complete genome - 1..4381608
4035 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
30	 60.39	0	34157..35557	-	466	86355699	ahcY	RHE_CH00031	-	S-adenosyl-L-homocysteine hydrolase
31	 57.25	-1	35702..35977	-	91	86355700	-	RHE_CH00032	-	phosphocarrier protein HPr protein (component of the phosphoenolpyruvate-dependent sugarphosphotransferase system)
32	 58.21	-1	35987..36388	-	133	86355701	-	RHE_CH00033	-	protein-N(pi)-phosphohistidine-sugar phosphotransferase protein (component of thephosphoenolpyruvate-dependent sugar phosphotransferasesystem)
33	 63.61	0	36539..36898	-	119	86355702	-	RHE_CH00034	-	hypothetical protein
34	 62.31	0	36985..38820	-	611	86355703	chvG	RHE_CH00035	-	two-component sensor histidine kinase protein
35	 62.43	0	38852..39607	-	251	86355704	chvI	RHE_CH00036	-	two-component response regulator protein
36	 63.63	0	39928..41538	+	536	86355705	pckA	RHE_CH00037	-	phosphoenolpyruvate carboxykinase
37	 63.01	0	41647..42084	+	145	86355706	-	RHE_CH00038	-	hypothetical protein
38	 62.91	0	42086..42697	+	203	86355707	alkB	RHE_CH00039	-	alkylated DNA repair protein
39	 58.73	0	42712..43707	-	331	86355708	coaA	RHE_CH00040	-	pantothenate kinase
40	 58.33	-1	43704..44027	-	107	86355709	hisE	RHE_CH00041	-	phosphoribosyl-ATP pyrophosphatase
41	 63.50	0	44044..44832	-	262	86355710	hisF	RHE_CH00042	-	imidazole glycerol phosphate synthase subunit HisF
42	 62.78	0	44833..45579	-	248	162329648	hisA	RHE_CH00043	-	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
43	 59.86	0	45586..46143	-	185	86355712	-	RHE_CH00044	-	hypothetical protein
44	 62.67	0	46375..47025	-	216	86355713	hisH	RHE_CH00045	-	imidazole glycerol phosphate synthase subunit HisH
45	 62.14	0	47028..47513	-	161	86355714	-	RHE_CH00046	-	hypothetical protein
46	 60.92	0	47535..48143	-	202	86355715	hisB	RHE_CH00047	-	imidazoleglycerol-phosphate dehydratase
47	 59.85	0	48319..48846	+	175	86355716	hslV	RHE_CH00048	-	ATP-dependent protease peptidase subunit
48	 60.63	0	48952..50259	+	435	86355717	hslU	RHE_CH00049	-	ATP-dependent protease ATP-binding subunit
49	 59.70	0	50448..51395	+	315	86355718	-	RHE_CH00050	-	hypothetical protein
50	 60.58	0	51444..52856	+	470	86355719	-	RHE_CH00051	-	cytochrome p450 protein
51	 60.27	0	52942..55113	+	723	86355720	glcB	RHE_CH00052	-	malate synthase G
52	 62.72	0	55180..55863	-	227	86355721	-	RHE_CH00053	-	hypothetical protein
53	 58.18	-1	56043..56537	+	164	86355722	-	RHE_CH00054	-	hypothetical protein
54	 61.14	0	56550..57128	-	192	86355723	actR	RHE_CH00055	-	two-component response regulator protein
55	 62.53	0	57199..58527	-	442	86355724	actS	RHE_CH00056	-	two-component sensor histidine kinase protein
56	 66.55	+1	58549..61014	-	821	86355725	helO	RHE_CH00057	-	helicase protein
57	 66.14	+1	61011..61958	-	315	86355726	ocdch1	RHE_CH00058	-	ornithine cyclodeaminase
58	 53.51	-2	70995..71777	+	260	86355727	-	RHE_CH00066	-	LuxR family transcriptional regulator
59	 60.24	0	71888..72307	-	139	86355728	-	RHE_CH00067	-	hypothetical protein
60	 60.41	0	72592..73614	+	340	86355729	-	RHE_CH00068	-	dTDP-glucose 4,6-dehydratase protein
61	 62.80	0	73616..74599	+	327	86355730	galE1	RHE_CH00069	-	UDP-glucose 4-epimerase protein
62	 62.97	0	74596..76464	+	622	86355731	-	RHE_CH00070	-	cellulose synthase protein
63	 60.69	0	76501..77019	+	172	86355732	-	RHE_CH00071	-	hypothetical protein
64	 61.52	0	77023..77994	+	323	86355733	-	RHE_CH00072	-	putative cellulase H precursor protein
65	 60.99	0	78151..79437	-	428	86355734	-	RHE_CH00073	-	sugar ABC transporter, substrate-binding protein
66	 64.72	0	79584..80612	+	342	86355735	-	RHE_CH00074	-	LacI family transcription regulator
67	 62.41	0	80622..82478	+	618	86355736	-	RHE_CH00075	-	hypothetical protein
68	 64.79	0	82475..83485	+	336	86355737	-	RHE_CH00076	-	D-2-hydroxyacid dehydrogenase protein
69	 60.17	0	83509..84786	-	425	86355738	-	RHE_CH00077	-	putative oxidoreducatse protein
70	 63.78	0	84832..85662	-	276	86355739	-	RHE_CH00078	-	putative endonuclease protein
71	 64.26	0	85691..86854	-	387	86355740	-	RHE_CH00079	-	hypothetical protein
72	 64.49	0	86858..88006	-	382	86355741	-	RHE_CH00080	-	putative oxidoreductase protein
73	 61.21	0	88137..88814	-	225	86355742	-	RHE_CH00081	-	TetR family transcriptional regulator
74	 61.38	0	89079..90365	+	428	86355743	-	RHE_CH00082	-	sugar ABC transporter, substrate-binding protein
75	 60.65	0	90384..91331	+	315	86355744	-	RHE_CH00083	-	sugar ABC transporter, permease protein
76	 59.57	0	91324..92211	+	295	86355745	-	RHE_CH00084	-	sugar ABC transporter, permease protein
77	 62.01	0	92235..93308	+	357	86355746	-	RHE_CH00085	-	oxidoreductase protein
78	 61.93	0	93339..94415	+	358	86355747	-	RHE_CH00086	-	sugar ABC transporter, ATP binding protein
79	 60.62	0	94515..95390	+	291	86355748	-	RHE_CH00087	-	putative choline kinase protein
80	 62.26	0	95391..97841	+	816	86355749	-	RHE_CH00088	-	glycine cleavage system T protein
81	 64.61	0	98109..99566	-	485	86355750	uxuB	RHE_CH00089	-	D-mannonate oxidoreductase protein
82	 63.56	0	99563..100978	-	471	86355751	uxaC	RHE_CH00090	-	glucuronate isomerase
83	 57.14	-1	101158..101367	+	69	162329647	-	RHE_CH00091	-	hypothetical protein
84	 64.78	0	101411..102895	-	494	86355753	gabDch	RHE_CH00092	-	succinate-semialdehyde dehydrogenase protein
85	 63.31	0	102958..104238	-	426	86355754	gabT	RHE_CH00093	-	4-aminobutyrate aminotransferase
86	 65.56	+1	104403..105212	+	269	86355755	-	RHE_CH00094	-	MerR family transcriptional regulator
87	 62.68	0	105297..105923	+	208	86355756	rnd1	RHE_CH00095	-	RNAse D protein
88	 64.49	0	106148..107665	+	505	86355757	-	RHE_CH00096	-	hypothetical protein
89	 60.45	0	107742..109445	-	567	86355758	rpsA	RHE_CH00097	-	30S ribosomal protein S1
90	 61.65	0	109619..110395	-	258	86355759	cmk	RHE_CH00098	-	cytidylate kinase
91	 57.03	-1	110650..111033	+	127	86355760	-	RHE_CH00099	-	hypothetical protein
92	 61.18	0	111780..112016	-	78	86355761	-	RHE_CH00101	-	hypothetical protein
93	 64.59	0	112252..112974	+	240	86355762	-	RHE_CH00102	-	hypothetical protein
94	 61.22	0	113042..113830	+	262	86355763	-	RHE_CH00103	-	hypothetical protein
95	 57.17	-1	113833..114306	-	157	86355764	-	RHE_CH00104	-	hypothetical protein
96	 63.68	0	114422..115057	+	211	86355765	-	RHE_CH00105	-	hypothetical protein
97	 63.10	0	115178..115597	-	139	86355766	irr	RHE_CH00106	-	iron transcriptional regulator protein
98	 61.82	0	115899..116414	+	171	86355767	fabA	RHE_CH00107	-	3-hydroxydecanoyl-(acyl carrier protein) dehydratase
99	 61.39	0	116460..117692	+	410	86355768	fabB	RHE_CH00108	-	3-oxoacyl-(acyl carrier protein) synthase I
100	 63.07	0	117697..118503	+	268	86355769	fabI1	RHE_CH00109	-	enoyl-(acyl carrier protein) reductase
101	 66.18	+1	118600..119616	-	338	86355770	-	RHE_CH00110	-	rRNA (guanine-N2-)-methyltransferase, small subunit protein
102	 61.80	0	119692..121830	-	712	86355771	pnp	RHE_CH00111	-	polynucleotide phosphorylase/polyadenylase
103	 55.56	-1	122180..122449	-	89	86355772	rpsO	RHE_CH00112	-	30S ribosomal protein S15
104	 59.27	0	122600..123451	-	283	86355773	-	RHE_CH00113	-	putative hydrolase protein
105	 63.24	0	123530..124462	-	310	86355774	truB	RHE_CH00114	-	tRNA pseudouridine synthase B
106	 59.85	0	124475..124885	-	136	86355775	rbfA	RHE_CH00115	-	ribosome-binding factor A
107	 65.03	+1	125036..127786	-	916	86355776	infB	RHE_CH00116	-	translation initiation factor IF-2
108	 62.75	0	127889..128578	-	229	86355777	-	RHE_CH00117	-	hypothetical protein
109	 61.30	0	128578..130179	-	533	86355778	nusA	RHE_CH00118	-	transcription elongation factor NusA
110	 57.79	-1	130240..130836	-	198	86355779	-	RHE_CH00119	-	hypothetical protein
111	 64.55	0	131018..132721	+	567	86355780	-	RHE_CH00120	-	putative ABC transporter, permease protein
112	 62.28	0	132730..133185	+	151	86355781	-	RHE_CH00121	-	acetyltransferase protein
113	 61.99	0	133192..134430	-	412	86355782	-	RHE_CH00122	-	transglycosylase protein
114	 64.36	0	134442..135047	-	201	86355783	recR	RHE_CH00123	-	recombination protein RecR
115	 59.67	0	135066..135722	+	218	86355784	-	RHE_CH00124	-	hypothetical protein
116	 62.96	0	135993..136316	-	107	86355785	-	RHE_CH00125	-	hypothetical protein
117	 65.28	+1	136339..138213	-	624	86355786	dnaX	RHE_CH00126	-	DNA polymerase III subunits gamma and tau
118	 59.85	0	138445..138855	+	136	86355787	-	RHE_CH00127	-	hypothetical protein
119	 62.08	0	138852..139811	+	319	86355788	-	RHE_CH00128	-	MutT/NUDIX family NTP pyrophosphohydrolase
120	 64.80	0	139816..140511	+	231	86355789	-	RHE_CH00129	-	transcriptional regulator protein
121	 62.06	0	141037..141405	+	122	86355790	-	RHE_CH00130	-	putative glyoxalase protein
122	 58.95	0	141425..142279	-	284	86355791	pheA	RHE_CH00131	-	prephenate dehydratase
123	 62.30	0	142290..143045	-	251	86355792	kdsB1	RHE_CH00132	-	3-deoxy-manno-octulosonate cytidylyltransferase
124	 61.17	0	143199..143762	+	187	86355793	cycM	RHE_CH00133	-	cytochrome-c protein
125	 62.55	0	143699..145084	-	461	86355794	-	RHE_CH00134	-	sugar ABC transporter, permease protein
126	 60.22	0	145313..146305	+	330	86355795	-	RHE_CH00135	-	sugar kinase protein
127	 63.89	0	146298..146837	-	179	86355796	-	RHE_CH00136	-	hypothetical protein
128	 63.64	0	146819..146917	-	32	86355797	-	RHE_CH00137	-	hypothetical protein
129	 63.67	0	147023..148024	+	333	86355798	-	RHE_CH00138	-	D-2-hydroxyacid dehydrogenase protein
61.61	MEAN

3.19	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.