IslandPath Analysis: Rhizobium etli CFN 42



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 61.61   STD DEV: 3.19
Rhizobium etli CFN 42, complete genome - 1..4381608
4035 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 60.71	0	473..1294	+	273	86355670	-	RHE_CH00001	-	hypothetical protein
2	 60.50	0	1326..1925	+	199	86355671	-	RHE_CH00002	-	Maf-like protein
3	 61.54	0	1918..2775	+	285	86355672	aroE	RHE_CH00003	-	shikimate 5-dehydrogenase
4	 58.17	-1	2775..3386	+	203	86355673	coaE	RHE_CH00004	-	dephospho-CoA kinase protein
5	 59.34	0	3379..4101	+	240	86355674	dnaQ	RHE_CH00005	-	DNA polymerase III subunit epsilon
6	 59.42	0	4154..4636	-	160	86355675	secB	RHE_CH00006	-	preprotein translocase subunit SecB
7	 59.17	0	4736..5242	-	168	86355676	fxsA	RHE_CH00007	-	FxsA
8	 61.70	0	5374..6078	+	234	86355677	-	RHE_CH00008	-	putative translocase transmembrane protein
9	 63.27	0	6164..7192	+	342	86355678	-	RHE_CH00009	-	lytic murein transglycosylase A protein
10	 64.66	0	7264..7761	+	165	86355679	-	RHE_CH00010	-	Smr/MutS family DNA repair protein
11	 61.59	0	7821..8135	+	104	86355680	-	RHE_CH00011	-	putative transcriptional regulator protein
12	 61.86	0	8271..10706	+	811	86355681	gyrB	RHE_CH00012	-	DNA gyrase subunit B
13	 60.17	0	10772..11371	-	199	86355682	-	RHE_CH00013	-	oxidoreductase protein
14	 60.00	0	11408..11692	-	94	86355683	-	RHE_CH00014	-	hypothetical protein
15	 62.28	0	12913..13755	+	280	86355684	-	RHE_CH00016	-	bifunctional 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase/5-carboxymethyl-2-oxo-hex-3-ene-1,7-dioatedecarboxylase
16	 60.02	0	13959..15236	+	425	86355685	-	RHE_CH00017	-	intracellular PHB depolymerase protein
17	 59.30	0	15300..15815	+	171	86355686	-	RHE_CH00018	-	hypothetical protein
18	 62.85	0	16022..16780	+	252	86355687	-	RHE_CH00019	-	putative zinc metallopeptidase protein
19	 57.10	-1	16856..17524	+	222	86355688	trpF	RHE_CH00020	-	N-(5'-phosphoribosyl)anthranilate isomerase
20	 62.82	0	17527..18747	+	406	86355689	trpB	RHE_CH00021	-	tryptophan synthase subunit beta
21	 61.90	0	18751..19590	+	279	86355690	trpA	RHE_CH00022	-	tryptophan synthase subunit alpha
22	 60.04	0	19630..20535	+	301	86355691	accD	RHE_CH00023	-	acetyl-CoA carboxylase subunit beta
23	 62.04	0	20620..21915	+	431	86355692	folC	RHE_CH00024	-	bifunctional folylpolyglutamate synthase/dihydrofolate syntase
24	 56.70	-1	21976..22296	-	106	86355693	trxA1	RHE_CH00025	-	thioredoxin protein
25	 64.05	0	22372..25923	-	1183	86355694	-	RHE_CH00026	-	nuclease/helicase protein, ATP dependent
26	 65.38	+1	25916..29110	-	1064	86355695	-	RHE_CH00027	-	hypothetical protein
27	 60.66	0	29115..29846	-	243	86355696	-	RHE_CH00028	-	nucleotidyltransferase protein
28	 62.31	0	29860..31374	-	504	86355697	-	RHE_CH00029	-	hypothetical protein
29	 63.38	0	31371..33953	-	860	86355698	-	RHE_CH00030	-	two-component sensor histidine kinase protein
30	 60.39	0	34157..35557	-	466	86355699	ahcY	RHE_CH00031	-	S-adenosyl-L-homocysteine hydrolase
31	 57.25	-1	35702..35977	-	91	86355700	-	RHE_CH00032	-	phosphocarrier protein HPr protein (component of the phosphoenolpyruvate-dependent sugarphosphotransferase system)
32	 58.21	-1	35987..36388	-	133	86355701	-	RHE_CH00033	-	protein-N(pi)-phosphohistidine-sugar phosphotransferase protein (component of thephosphoenolpyruvate-dependent sugar phosphotransferasesystem)
33	 63.61	0	36539..36898	-	119	86355702	-	RHE_CH00034	-	hypothetical protein
34	 62.31	0	36985..38820	-	611	86355703	chvG	RHE_CH00035	-	two-component sensor histidine kinase protein
35	 62.43	0	38852..39607	-	251	86355704	chvI	RHE_CH00036	-	two-component response regulator protein
36	 63.63	0	39928..41538	+	536	86355705	pckA	RHE_CH00037	-	phosphoenolpyruvate carboxykinase
37	 63.01	0	41647..42084	+	145	86355706	-	RHE_CH00038	-	hypothetical protein
38	 62.91	0	42086..42697	+	203	86355707	alkB	RHE_CH00039	-	alkylated DNA repair protein
39	 58.73	0	42712..43707	-	331	86355708	coaA	RHE_CH00040	-	pantothenate kinase
40	 58.33	-1	43704..44027	-	107	86355709	hisE	RHE_CH00041	-	phosphoribosyl-ATP pyrophosphatase
41	 63.50	0	44044..44832	-	262	86355710	hisF	RHE_CH00042	-	imidazole glycerol phosphate synthase subunit HisF
42	 62.78	0	44833..45579	-	248	162329648	hisA	RHE_CH00043	-	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
43	 59.86	0	45586..46143	-	185	86355712	-	RHE_CH00044	-	hypothetical protein
44	 62.67	0	46375..47025	-	216	86355713	hisH	RHE_CH00045	-	imidazole glycerol phosphate synthase subunit HisH
45	 62.14	0	47028..47513	-	161	86355714	-	RHE_CH00046	-	hypothetical protein
46	 60.92	0	47535..48143	-	202	86355715	hisB	RHE_CH00047	-	imidazoleglycerol-phosphate dehydratase
47	 59.85	0	48319..48846	+	175	86355716	hslV	RHE_CH00048	-	ATP-dependent protease peptidase subunit
48	 60.63	0	48952..50259	+	435	86355717	hslU	RHE_CH00049	-	ATP-dependent protease ATP-binding subunit
49	 59.70	0	50448..51395	+	315	86355718	-	RHE_CH00050	-	hypothetical protein
50	 60.58	0	51444..52856	+	470	86355719	-	RHE_CH00051	-	cytochrome p450 protein
51	 60.27	0	52942..55113	+	723	86355720	glcB	RHE_CH00052	-	malate synthase G
52	 62.72	0	55180..55863	-	227	86355721	-	RHE_CH00053	-	hypothetical protein
53	 58.18	-1	56043..56537	+	164	86355722	-	RHE_CH00054	-	hypothetical protein
54	 61.14	0	56550..57128	-	192	86355723	actR	RHE_CH00055	-	two-component response regulator protein
55	 62.53	0	57199..58527	-	442	86355724	actS	RHE_CH00056	-	two-component sensor histidine kinase protein
56	 66.55	+1	58549..61014	-	821	86355725	helO	RHE_CH00057	-	helicase protein
57	 66.14	+1	61011..61958	-	315	86355726	ocdch1	RHE_CH00058	-	ornithine cyclodeaminase
58	 53.51	-2	70995..71777	+	260	86355727	-	RHE_CH00066	-	LuxR family transcriptional regulator
59	 60.24	0	71888..72307	-	139	86355728	-	RHE_CH00067	-	hypothetical protein
60	 60.41	0	72592..73614	+	340	86355729	-	RHE_CH00068	-	dTDP-glucose 4,6-dehydratase protein
61	 62.80	0	73616..74599	+	327	86355730	galE1	RHE_CH00069	-	UDP-glucose 4-epimerase protein
62	 62.97	0	74596..76464	+	622	86355731	-	RHE_CH00070	-	cellulose synthase protein
63	 60.69	0	76501..77019	+	172	86355732	-	RHE_CH00071	-	hypothetical protein
64	 61.52	0	77023..77994	+	323	86355733	-	RHE_CH00072	-	putative cellulase H precursor protein
65	 60.99	0	78151..79437	-	428	86355734	-	RHE_CH00073	-	sugar ABC transporter, substrate-binding protein
66	 64.72	0	79584..80612	+	342	86355735	-	RHE_CH00074	-	LacI family transcription regulator
67	 62.41	0	80622..82478	+	618	86355736	-	RHE_CH00075	-	hypothetical protein
68	 64.79	0	82475..83485	+	336	86355737	-	RHE_CH00076	-	D-2-hydroxyacid dehydrogenase protein
69	 60.17	0	83509..84786	-	425	86355738	-	RHE_CH00077	-	putative oxidoreducatse protein
70	 63.78	0	84832..85662	-	276	86355739	-	RHE_CH00078	-	putative endonuclease protein
71	 64.26	0	85691..86854	-	387	86355740	-	RHE_CH00079	-	hypothetical protein
72	 64.49	0	86858..88006	-	382	86355741	-	RHE_CH00080	-	putative oxidoreductase protein
73	 61.21	0	88137..88814	-	225	86355742	-	RHE_CH00081	-	TetR family transcriptional regulator
74	 61.38	0	89079..90365	+	428	86355743	-	RHE_CH00082	-	sugar ABC transporter, substrate-binding protein
75	 60.65	0	90384..91331	+	315	86355744	-	RHE_CH00083	-	sugar ABC transporter, permease protein
76	 59.57	0	91324..92211	+	295	86355745	-	RHE_CH00084	-	sugar ABC transporter, permease protein
77	 62.01	0	92235..93308	+	357	86355746	-	RHE_CH00085	-	oxidoreductase protein
78	 61.93	0	93339..94415	+	358	86355747	-	RHE_CH00086	-	sugar ABC transporter, ATP binding protein
79	 60.62	0	94515..95390	+	291	86355748	-	RHE_CH00087	-	putative choline kinase protein
80	 62.26	0	95391..97841	+	816	86355749	-	RHE_CH00088	-	glycine cleavage system T protein
81	 64.61	0	98109..99566	-	485	86355750	uxuB	RHE_CH00089	-	D-mannonate oxidoreductase protein
82	 63.56	0	99563..100978	-	471	86355751	uxaC	RHE_CH00090	-	glucuronate isomerase
83	 57.14	-1	101158..101367	+	69	162329647	-	RHE_CH00091	-	hypothetical protein
84	 64.78	0	101411..102895	-	494	86355753	gabDch	RHE_CH00092	-	succinate-semialdehyde dehydrogenase protein
85	 63.31	0	102958..104238	-	426	86355754	gabT	RHE_CH00093	-	4-aminobutyrate aminotransferase
86	 65.56	+1	104403..105212	+	269	86355755	-	RHE_CH00094	-	MerR family transcriptional regulator
87	 62.68	0	105297..105923	+	208	86355756	rnd1	RHE_CH00095	-	RNAse D protein
88	 64.49	0	106148..107665	+	505	86355757	-	RHE_CH00096	-	hypothetical protein
89	 60.45	0	107742..109445	-	567	86355758	rpsA	RHE_CH00097	-	30S ribosomal protein S1
90	 61.65	0	109619..110395	-	258	86355759	cmk	RHE_CH00098	-	cytidylate kinase
91	 57.03	-1	110650..111033	+	127	86355760	-	RHE_CH00099	-	hypothetical protein
92	 61.18	0	111780..112016	-	78	86355761	-	RHE_CH00101	-	hypothetical protein
93	 64.59	0	112252..112974	+	240	86355762	-	RHE_CH00102	-	hypothetical protein
94	 61.22	0	113042..113830	+	262	86355763	-	RHE_CH00103	-	hypothetical protein
95	 57.17	-1	113833..114306	-	157	86355764	-	RHE_CH00104	-	hypothetical protein
96	 63.68	0	114422..115057	+	211	86355765	-	RHE_CH00105	-	hypothetical protein
97	 63.10	0	115178..115597	-	139	86355766	irr	RHE_CH00106	-	iron transcriptional regulator protein
98	 61.82	0	115899..116414	+	171	86355767	fabA	RHE_CH00107	-	3-hydroxydecanoyl-(acyl carrier protein) dehydratase
99	 61.39	0	116460..117692	+	410	86355768	fabB	RHE_CH00108	-	3-oxoacyl-(acyl carrier protein) synthase I
100	 63.07	0	117697..118503	+	268	86355769	fabI1	RHE_CH00109	-	enoyl-(acyl carrier protein) reductase
61.61	MEAN

3.19	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.