IslandPathversion 1.0

IslandPath Analysis: Rhizobium etli CFN 42



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 61.61 STD DEV: 3.19
Rhizobium etli CFN 42, complete genome - 1..4381608
4035 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
350	 61.39	0	375207..375623	-	138	86356019	-	RHE_CH00362	-	lactoylglutathione lyase protein
351	 63.33	0	375629..376348	-	239	86356020	rph	RHE_CH00363	-	ribonuclease PH
352	 63.23	0	376458..377564	+	368	86356021	hrcA	RHE_CH00364	-	heat-inducible transcription repressor
353	 63.84	0	377676..378311	+	211	86356022	grpE	RHE_CH00365	-	molecular chaperone heat shock protein (hsp-70)
354	 62.33	0	378352..379296	-	314	86356023	iunH1	RHE_CH00366	-	inosine-uridine preferring nucleoside hydrolase protein
355	 62.44	0	379578..380003	+	141	86356024	hsp	RHE_CH00367	-	molecular chaperone small heat shock protein
356	 56.98	-1	380050..380307	+	85	86356025	-	RHE_CH00368	-	hypothetical protein
357	 63.35	0	380592..381284	-	230	86356026	trmB	RHE_CH00369	-	tRNA (guanine-N(7))-methyltransferase
358	 63.64	0	381290..382543	-	417	86356027	metK	RHE_CH00370	-	S-adenosylmethionine synthetase
359	 59.05	0	382724..383143	-	139	86356028	-	RHE_CH00371	-	transcriptional regulator protein
360	 62.65	0	383304..384896	-	530	86356029	lnt	RHE_CH00372	-	apolipoprotein N-acyltransferase
361	 64.75	0	385008..386153	-	381	86356030	-	RHE_CH00373	-	putative hemolysin protein
362	 58.91	0	386150..386665	-	171	86356031	-	RHE_CH00374	-	hypothetical protein
363	 63.72	0	386665..387717	-	350	86356032	phoH	RHE_CH00375	-	phosphate starvation inducible protein
364	 62.70	0	387736..389145	-	469	86356033	-	RHE_CH00376	-	putative 2-methylthioadenine synthetase (miaB-like) protein
365	 66.67	+1	389195..389929	-	244	86356034	olsA	RHE_CH00377	-	1-acyl-sn-glycerol-3-phosphate acyltransferase (phospholipid/glycerol acyltransferase) protein
366	 60.37	0	390020..390448	-	142	86356035	fur	RHE_CH00378	-	ferric uptake regulation protein
367	 64.65	0	390528..391022	-	164	86356036	rimI	RHE_CH00379	-	ribosomal-protein-alanine N-acetyltransferase protein
368	 64.86	+1	391025..391687	-	220	86356037	-	RHE_CH00380	-	O-sialoglycoprotein endopeptidase protein
369	 59.26	0	391775..392341	-	188	86356038	nifUch1	RHE_CH00381	-	nitrogen fixation protein
370	 64.84	+1	392451..392942	-	163	86356039	-	RHE_CH00382	-	putative universal stress protein
371	 62.16	0	393052..394116	-	354	86356040	trpS	RHE_CH00383	-	tryptophanyl-tRNA synthetase
372	 63.16	0	394214..394612	-	132	86356041	-	RHE_CH00384	-	putative glyoxalase protein
373	 62.70	0	394798..395226	+	142	86356042	-	RHE_CH00385	-	hypothetical protein
374	 63.88	0	395395..396975	-	526	86356043	mviN	RHE_CH00386	-	virulence factor transmembrane protein
375	 62.86	0	396986..399820	-	944	86356044	glnD	RHE_CH00387	-	PII uridylyl-transferase
376	 65.71	+1	400314..403040	-	908	86356045	mutS	RHE_CH00388	-	DNA mismatch repair protein
377	 64.35	0	403154..405436	+	760	86356046	tme	RHE_CH00389	-	malic enzyme
378	 62.53	0	405692..406561	-	289	86356047	-	RHE_CH00390	-	hypothetical protein
379	 66.18	+1	406672..408954	-	760	86356048	-	RHE_CH00391	-	two-component sensor histidine kinase/response regulator hybrid protein
380	 60.32	0	409010..409513	-	167	86356049	lpsA	RHE_CH00392	-	lipoprotein signal peptidase protein
381	 65.27	+1	409510..410370	-	286	86356050	spoU	RHE_CH00393	-	rRNA methylase
382	 65.75	+1	410367..411461	-	364	86356051	-	RHE_CH00394	-	SAM-dependent methyltransferase protein
383	 63.69	0	411588..412226	-	212	86356052	-	RHE_CH00395	-	MutT/NUDIX family hydrolase
384	 61.18	0	412294..412749	+	151	86356053	-	RHE_CH00396	-	hypothetical protein
385	 60.38	0	412718..413242	+	174	86356054	-	RHE_CH00397	-	putative acetyltransferase protein
386	 63.36	0	413262..413594	-	110	86356055	-	RHE_CH00398	-	hypothetical protein
387	 60.67	0	413725..414024	-	99	86356056	ihfB	RHE_CH00399	-	integration host factor subunit beta
388	 60.78	0	414054..415004	-	316	86356057	sppA	RHE_CH00400	-	proteinase IV protein
389	 58.26	-1	415223..415888	+	221	86356058	-	RHE_CH00401	-	hypothetical protein
390	 60.19	0	416012..416536	+	174	86356059	-	RHE_CH00402	-	hypothetical protein
391	 62.93	0	416574..417350	+	258	86356060	-	RHE_CH00403	-	amino acid ABC transporter ATP-binding protein
392	 62.95	0	417495..419054	+	519	86356061	rpoNch	RHE_CH00404	-	RNA polymerase factor sigma-54
393	 63.27	0	419137..420048	+	303	86356062	-	RHE_CH00405	-	putative permease protein
394	 54.77	-2	420275..420913	+	212	86356063	-	RHE_CH00406	-	sigma 54 modulation protein
395	 61.08	0	420987..421451	+	154	86356064	ptsNch	RHE_CH00407	-	protein-N(pi)-phosphohistidine-sugar phosphotransferase protein (enzyme II of thephosphotransferase system)
396	 63.31	0	421524..423878	-	784	86356065	mcpX1	RHE_CH00408	-	methyl-accepting chemotaxis protein
397	 64.75	0	424118..425056	-	312	86356066	rbsK	RHE_CH00409	-	ribose kinase protein
398	 63.48	0	425097..426131	-	344	86356067	-	RHE_CH00410	-	hypothetical protein
399	 61.70	0	426441..428012	+	523	86356068	mcpV1	RHE_CH00411	-	methyl-accepting chemotaxis protein
400	 61.05	0	428111..428626	+	171	86356069	def	RHE_CH00412	-	peptide deformylase
401	 57.86	-1	428949..429368	+	139	86356070	stdB	RHE_CH00413	-	plasmid stability protein
402	 65.92	+1	429389..430324	+	311	86356071	fmt	RHE_CH00414	-	methionyl-tRNA formyltransferase
403	 66.79	+1	430324..431127	+	267	86356072	truA	RHE_CH00415	-	tRNA pseudouridine synthase A
404	 63.99	0	431155..431751	-	198	86356073	-	RHE_CH00416	-	hypothetical protein
405	 65.69	+1	431738..432967	-	409	86356074	dapE2	RHE_CH00417	-	succinyl-diaminopimelate desuccinylase
406	 62.83	0	433032..433892	-	286	86356075	dapD	RHE_CH00418	-	2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase
407	 61.11	0	433921..434946	+	341	86356076	-	RHE_CH00419	-	hypothetical protein
408	 63.90	0	435021..435635	-	204	86356077	-	RHE_CH00420	-	hypothetical protein
409	 58.72	0	435743..436459	-	238	86356078	-	RHE_CH00421	-	putative hydrolase protein
410	 62.68	0	436645..438174	+	509	86356079	bchE	RHE_CH00422	-	Mg-protoporphyrin IX monomethyl ester oxidative cyclase subunit protein
411	 64.71	0	438230..439303	+	357	86356080	ada	RHE_CH00423	-	methylated-DNA-[protein]-cysteine S-methyltransferase protein
412	 62.91	0	439300..440070	+	256	86356081	-	RHE_CH00424	-	putative carboxyphosphonoenolpyruvate phosphonomutase protein
413	 62.84	0	440134..441282	-	382	86356082	lldD1	RHE_CH00425	-	L-lactate dehydrogenase (cytochrome) protein
414	 61.98	0	441665..442603	-	312	86356083	-	RHE_CH00426	-	fatty acid desaturase protein
415	 60.51	0	442742..443131	+	129	86356084	-	RHE_CH00427	-	ArsR family transcriptional regulator
416	 61.07	0	443228..444316	-	362	86356085	argB	RHE_CH00428	-	acetylglutamate kinase
417	 61.94	0	444378..444800	+	140	86356086	sigK	RHE_CH00429	-	RNA polymerase sigma factor
418	 63.75	0	444797..445516	+	239	86356087	-	RHE_CH00430	-	hypothetical protein
419	 58.71	0	445590..446180	+	196	86356088	-	RHE_CH00431	-	putative transforming growth factor-induced protein (and secreted protein MPB70)
420	 57.61	-1	446286..447356	-	356	86356089	-	RHE_CH00432	-	two-component sensor histidine kinase protein
421	 54.55	-2	447592..448020	-	142	86356090	-	RHE_CH00433	-	hypothetical protein
422	 57.33	-1	448069..448293	-	74	86356091	-	RHE_CH00434	-	hypothetical protein
423	 55.56	-1	448424..448648	-	74	86356092	-	RHE_CH00435	-	cold shock protein
424	 61.47	0	448878..449531	-	217	86356093	engB	RHE_CH00436	-	GTPase EngB
425	 60.87	0	449672..451465	-	597	86356094	-	RHE_CH00437	-	putative inner membrane protein translocase component YidC
426	 61.94	0	451465..451866	-	133	86356095	rnpA	RHE_CH00438	-	ribonuclease P
427	 63.70	0	451888..452022	-	44	86356096	rpmH	RHE_CH00439	-	50S ribosomal protein L34
428	 64.97	+1	452442..454445	+	667	86356097	mcpT	RHE_CH00440	-	methyl-accepting chemotaxis protein
429	 64.10	0	454643..456160	+	505	86356098	regM	RHE_CH00441	-	two-component sensor histidine kinase protein
430	 51.19	-2	456432..457310	-	292	86356099	-	RHE_CH00443	-	hypothetical protein
431	 55.79	-1	457521..457943	-	140	86356100	-	RHE_CH00444	-	hypothetical protein
432	 63.61	0	458206..458793	+	195	86356101	-	RHE_CH00445	-	hypothetical protein
433	 65.42	+1	459016..459336	+	106	86356102	-	RHE_CH00446	-	hypothetical protein
434	 63.27	0	459819..460112	+	97	86356103	-	RHE_CH00447	-	hypothetical protein
435	 65.62	+1	460376..461044	+	222	86356104	pmtA	RHE_CH00448	-	phospholipid N-methyltransferase protein
436	 61.56	0	461301..462182	+	293	86356105	-	RHE_CH00449	-	oxidoreductase protein
437	 64.87	+1	462794..464071	+	425	86356106	-	RHE_CH00450	-	hypothetical protein
438	 64.99	+1	464155..465405	+	416	86356107	-	RHE_CH00451	-	D-amino acid dehydrogenase protein
439	 65.61	+1	465458..466495	+	345	86356108	-	RHE_CH00452	-	proline racemase protein
440	 65.46	+1	466531..466779	-	82	86356109	-	RHE_CH00453	-	hypothetical protein
441	 61.98	0	466903..467265	-	120	86356110	-	RHE_CH00454	-	hypothetical protein
442	 62.03	0	467262..467843	-	193	86356111	-	RHE_CH00455	-	TetR family transcriptional regulator
443	 62.82	0	468071..469603	-	510	86356112	-	RHE_CH00456	-	two-component response regulator protein
444	 64.14	0	469720..470154	+	144	86356113	-	RHE_CH00457	-	hypothetical protein
445	 60.04	0	470266..470748	+	160	86356114	-	RHE_CH00458	-	hypothetical protein
446	 59.21	0	470875..472416	-	513	86356115	-	RHE_CH00459	-	putative sensory box/GGDEF family protein
447	 61.21	0	472851..473858	+	335	86356116	-	RHE_CH00460	-	zinc-binding oxidoreductase protein
448	 62.54	0	473887..474468	-	193	86356117	-	RHE_CH00461	-	TetR family transcriptional regulator
449	 58.69	0	474735..476012	-	425	86356118	-	RHE_CH00462	-	hypothetical protein
61.61	MEAN

3.19	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.