IslandPathversion 1.0

IslandPath Analysis: Rhizobium etli CFN 42



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 61.61 STD DEV: 3.19
Rhizobium etli CFN 42, complete genome - 1..4381608
4035 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3927	 56.25	-1	4252469..4253044	-	191	86359596	aniA	RHE_CH04017	-	carbon flux regulator protein
3928	 65.40	+1	4253282..4254463	+	393	86359597	phbAch	RHE_CH04018	-	acetyl-CoA acetyltransferase
3929	 58.82	0	4254535..4255260	+	241	86359598	phbB	RHE_CH04019	-	acetoacetyl-CoA reductase protein
3930	 56.86	-1	4255267..4255419	+	50	86359599	-	RHE_CH04020	-	hypothetical protein
3931	 67.82	+1	4255670..4255930	-	86	86359600	-	RHE_CH04021	-	hypothetical protein
3932	 64.10	0	4256943..4260101	+	1052	86359601	mgpS	RHE_CH04022	-	ATP-dependent DNA helicase protein
3933	 63.70	0	4260104..4260508	+	134	86359602	-	RHE_CH04023	-	putative heat shock protein (ribosome-associated)
3934	 53.98	-2	4260700..4261038	+	112	86359603	fdxA	RHE_CH04024	-	ferredoxin III protein
3935	 56.02	-1	4261433..4262005	+	190	86359604	-	RHE_CH04025	-	CarD family transcriptional regulator
3936	 62.50	0	4262380..4263243	+	287	86359605	rpoH2	RHE_CH04026	-	RNA polymerase factor sigma-32
3937	 63.88	0	4263295..4264836	-	513	86359606	-	RHE_CH04027	-	putative metalloprotease protein
3938	 63.27	0	4265229..4266761	-	510	86359607	-	RHE_CH04028	-	putative transporter, permease protein
3939	 65.30	+1	4266966..4267403	+	145	86359608	-	RHE_CH04029	-	MarR family transcriptional regulator
3940	 64.21	0	4267476..4268126	+	216	86359609	-	RHE_CH04030	-	hypothetical protein
3941	 63.87	0	4268130..4269950	+	606	86359610	-	RHE_CH04031	-	putative ABC transporter, ATP-binding protein
3942	 61.98	0	4270014..4271870	-	618	86359611	-	RHE_CH04032	-	ABC transporter permease/ATP-binding protein
3943	 57.34	-1	4272216..4273073	+	285	86359612	metA	RHE_CH04033	-	homoserine O-succinyltransferase
3944	 62.27	0	4273192..4274214	+	340	86359613	galM	RHE_CH04034	-	aldose-1-epimerase protein
3945	 64.06	0	4274317..4275123	+	268	86359614	-	RHE_CH04035	-	GntR family transcriptional regulator
3946	 65.31	+1	4275116..4276147	+	343	86359615	glmS2	RHE_CH04036	-	glucosamine--fructose-6-phosphate aminotransferase protein
3947	 65.89	+1	4276147..4277298	+	383	86359616	nagA	RHE_CH04037	-	n-acetylglucosamine-6-phosphate deacetylase protein
3948	 64.06	0	4277316..4278044	+	242	86359617	-	RHE_CH04038	-	hypothetical protein
3949	 58.74	0	4278067..4278495	-	142	86359618	-	RHE_CH04039	-	hypothetical protein
3950	 61.75	0	4278670..4279239	-	189	86359619	efp	RHE_CH04040	-	elongation factor P
3951	 64.60	0	4279388..4280449	+	353	86359620	genX	RHE_CH04041	-	lysyl-tRNA synthetase protein
3952	 62.57	0	4280446..4281495	+	349	86359621	kamA	RHE_CH04042	-	L-lysine 2,3-aminomutase protein
3953	 57.14	-1	4281761..4282012	+	83	86359622	-	RHE_CH04043	-	acyl carrier protein
3954	 61.25	0	4282012..4283193	+	393	86359623	acd2	RHE_CH04044	-	acyl-CoA dehydrogenase protein
3955	 61.39	0	4283198..4284106	+	302	86359624	-	RHE_CH04045	-	hypothetical protein
3956	 60.64	0	4284115..4285077	+	320	86359625	-	RHE_CH04046	-	hypothetical protein
3957	 63.36	0	4285094..4287574	+	826	86359626	manB3	RHE_CH04047	-	beta-mannosidase protein
3958	 61.24	0	4287616..4288794	+	392	86359627	-	RHE_CH04048	-	putative glycosyltransferase protein
3959	 64.22	0	4288931..4292194	+	1087	86359628	-	RHE_CH04049	-	hypothetical protein
3960	 62.51	0	4292217..4293395	-	392	86359629	aceC	RHE_CH04050	-	cellobiosyl-diphosphoprenyl alpha-mannosyltransferase protein
3961	 55.70	-1	4293537..4293773	-	78	86359630	-	RHE_CH04051	-	putative transcriptional regulator protein
3962	 65.57	+1	4293842..4294750	-	302	86359631	-	RHE_CH04052	-	LysR family transcriptional regulator
3963	 64.69	0	4294854..4296266	+	470	86359632	-	RHE_CH04053	-	hypothetical protein
3964	 65.50	+1	4296334..4297617	+	427	86359633	-	RHE_CH04054	-	oxidoreductase protein
3965	 65.24	+1	4297643..4299181	+	512	86359634	-	RHE_CH04055	-	aldehyde dehydrogenase
3966	 60.51	0	4299369..4300391	+	340	86359635	sfuA	RHE_CH04056	-	iron(III) ABC transporter, substrate-binding protein
3967	 64.27	0	4300495..4302162	+	555	86359636	sfuB	RHE_CH04057	-	iron(III) ABC transporter, permease protein
3968	 66.38	+1	4302159..4303196	+	345	86359637	sfuC	RHE_CH04058	-	iron(III) ABC transporter, ATP-binding protein
3969	 62.16	0	4303232..4304563	-	443	86359638	-	RHE_CH04059	-	hypothetical protein
3970	 63.69	0	4304967..4306409	-	480	86359639	-	RHE_CH04060	-	hypothetical protein
3971	 60.69	0	4307166..4307483	+	105	86359640	rplU	RHE_CH04062	-	50S ribosomal protein L21
3972	 59.26	0	4307518..4307787	+	89	86359641	rpmA	RHE_CH04063	-	50S ribosomal protein L27
3973	 61.19	0	4307913..4308569	+	218	86359642	-	RHE_CH04064	-	putative acetyltransferase protein
3974	 65.99	+1	4308566..4309153	+	195	86359643	-	RHE_CH04065	-	putative acetyltransferase protein
3975	 62.78	0	4309248..4309967	-	239	86359644	-	RHE_CH04066	-	putative endonuclease/exonuclease/phosphatase protein
3976	 62.18	0	4310199..4311290	+	363	86359645	obgE	RHE_CH04067	-	GTPase ObgE
3977	 67.18	+1	4311277..4312446	+	389	86359646	proB	RHE_CH04068	-	gamma-glutamyl kinase
3978	 63.86	0	4312439..4313722	+	427	86359647	proA	RHE_CH04069	-	gamma-glutamyl phosphate reductase
3979	 64.59	0	4313781..4314359	+	192	86359648	nadD	RHE_CH04070	-	nicotinic acid mononucleotide adenylyltransferase
3980	 62.37	0	4314798..4315589	+	263	86359649	modA	RHE_CH04071	-	molybdenum ABC transporter, substrate-binding protein
3981	 64.48	0	4315825..4316556	+	243	86359650	modB	RHE_CH04072	-	molybdate ABC transporter permease protein
3982	 63.58	0	4316553..4317620	+	355	86359651	modC	RHE_CH04073	-	molybdenum ABC transporter, ATP-binding protein
3983	 63.23	0	4317621..4317998	-	125	86359652	modE	RHE_CH04074	-	molybdenum-binding transcriptional regulator-repressor protein (molybdenum transport associatedprotein)
3984	 56.44	-1	4318202..4318651	+	149	86359653	-	RHE_CH04075	-	hypothetical protein
3985	 62.94	0	4318768..4319250	+	160	86359654	-	RHE_CH04076	-	SPOUT methyltransferase superfamily protein
3986	 64.81	+1	4319430..4320830	+	466	86359655	-	RHE_CH04077	-	putative metalloendopeptidase protein
3987	 62.73	0	4320874..4322142	+	422	86359656	ctpA	RHE_CH04078	-	C-terminal processing peptidase protein
3988	 64.73	0	4322282..4323415	+	377	86359657	-	RHE_CH04079	-	hypothetical protein
3989	 62.36	0	4323441..4323974	+	177	86359658	ialA	RHE_CH04080	-	dinucleoside polyphosphate hydrolase
3990	 54.90	-2	4324023..4324532	-	169	86359659	bfr	RHE_CH04081	-	bacterioferritin protein
3991	 50.91	-2	4324474..4324803	-	109	86359660	-	RHE_CH04082	-	hypothetical protein
3992	 58.76	0	4324967..4328419	-	1150	86359661	dnaEch2	RHE_CH04083	-	DNA polymerase III alpha subunit protein
3993	 61.71	0	4328419..4330032	-	537	86359662	-	RHE_CH04084	-	putative nucleotidyltransferase protein
3994	 64.66	0	4329878..4330822	-	314	86359663	-	RHE_CH04085	-	hypothetical protein
3995	 58.68	0	4330986..4331423	+	145	86359664	-	RHE_CH04086	-	hypothetical protein
3996	 59.90	0	4331446..4331652	-	68	86359665	-	RHE_CH04087	-	hypothetical protein
3997	 60.26	0	4331652..4332557	-	301	86359666	citEch	RHE_CH04088	-	citrate lyase, beta subunit protein
3998	 60.26	0	4332670..4332903	+	77	86359667	-	RHE_CH04089	-	hypothetical protein
3999	 60.24	0	4333010..4333429	+	139	86359668	-	RHE_CH04090	-	hypothetical protein
4000	 58.29	-1	4333563..4334171	+	202	86359669	leuD	RHE_CH04091	-	isopropylmalate isomerase small subunit
4001	 65.17	+1	4334234..4335166	-	310	86359670	-	RHE_CH04092	-	putative L-serine dehydratase protein
4002	 63.70	0	4335410..4336522	+	370	86359671	leuB	RHE_CH04093	-	3-isopropylmalate dehydrogenase
4003	 60.37	0	4336751..4337449	+	232	86359672	-	RHE_CH04094	-	putative phosphatase protein
4004	 61.84	0	4337491..4339377	-	628	86359673	-	RHE_CH04095	-	putative transporter, permease protein
4005	 64.86	+1	4339619..4340890	-	423	86359674	-	RHE_CH04096	-	hypothetical protein
4006	 65.37	+1	4340887..4341579	-	230	86359675	-	RHE_CH04097	-	putative ABC transporter, ATP-binding protein
4007	 61.90	0	4341585..4342046	-	153	86359676	-	RHE_CH04098	-	hypothetical protein
4008	 60.06	0	4342140..4343894	-	584	86359677	phoA	RHE_CH04099	-	alkaline phosphatase protein
4009	 60.68	0	4344306..4345340	+	344	86359678	asd	RHE_CH04100	-	aspartate-semialdehyde dehydrogenase
4010	 63.52	0	4345511..4346335	+	274	86359679	-	RHE_CH04101	-	putative membrane-bound lytic murein transglycosylase protein
4011	 61.36	0	4346390..4348009	-	539	86359680	-	RHE_CH04102	-	putative cellulose biosynthesis transcriptional regulator protein
4012	 59.03	0	4348100..4348741	-	213	86359681	cynT	RHE_CH04103	-	carbonic anhydrase protein
4013	 64.84	+1	4348800..4349675	+	291	86359682	pdxK	RHE_CH04104	-	pyridoxal kinase protein
4014	 63.11	0	4349966..4354741	+	1591	86359683	-	RHE_CH04105	-	putative NAD-specific glutamate dehydrogenase protein
4015	 62.71	0	4354765..4356153	+	462	86359684	-	RHE_CH04106	-	hypothetical protein
4016	 62.15	0	4356166..4357782	-	538	86359685	purH	RHE_CH04107	-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
4017	 61.31	0	4357988..4359631	-	547	86359686	-	RHE_CH04108	-	hypothetical protein
4018	 65.59	+1	4359862..4361256	-	464	86359687	-	RHE_CH04109	-	RNA methyltransferase - sun protein
4019	 61.13	0	4361253..4362209	-	318	86359688	htpX2	RHE_CH04110	-	heat shock protein HtpX
4020	 66.22	+1	4362320..4362544	+	74	86359689	-	RHE_CH04111	-	hypothetical protein
4021	 60.69	0	4362703..4364658	-	651	86359690	acsA2	RHE_CH04112	-	acetyl-CoA synthetase
4022	 62.96	0	4364887..4365588	+	233	86359691	-	RHE_CH04113	-	hypothetical protein
4023	 63.42	0	4365855..4367765	-	636	86359692	-	RHE_CH04114	-	propionate-CoA ligase protein
4024	 63.94	0	4367848..4368507	-	219	86359693	-	RHE_CH04115	-	hypothetical protein
4025	 61.73	0	4368710..4371340	+	876	86359694	leuS	RHE_CH04116	-	leucyl-tRNA synthetase
4026	 62.45	0	4371366..4371839	+	157	86359695	-	RHE_CH04117	-	hypothetical protein
61.61	MEAN

3.19	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.