IslandPathversion 1.0

IslandPath Analysis: Rhizobium etli CFN 42



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 61.61 STD DEV: 3.19
Rhizobium etli CFN 42, complete genome - 1..4381608
4035 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3845	 58.17	-1	4163574..4163879	-	101	86359514	phhB	RHE_CH03934	-	pterin-4-alpha-carbinolamine dehydratase
3846	 61.68	0	4163915..4164415	+	166	86359515	-	RHE_CH03935	-	tyrosine phosphatase protein
3847	 61.62	0	4164322..4164915	-	197	86359516	ligT	RHE_CH03936	-	2`-5` RNA ligase protein
3848	 59.74	0	4164984..4165517	-	177	86359517	tesA	RHE_CH03937	-	acyl-CoA thioesterase protein
3849	 62.99	0	4165701..4166408	+	235	86359518	-	RHE_CH03938	-	putative ABC transporter, ATP-binding protein (involved in lysophospholipase L1 biosynthesis)
3850	 65.37	+1	4166411..4168948	+	845	86359519	-	RHE_CH03939	-	putative ABC transporter, permease protein (involved in lysophospholipase L1 biosynthesis)
3851	 59.95	0	4169130..4169858	+	242	86359520	-	RHE_CH03940	-	hypothetical protein
3852	 63.62	0	4169965..4170522	+	185	86359521	-	RHE_CH03941	-	putative phosphinothricin N-acetyltransferase (antibiotic resistance) protein
3853	 57.21	-1	4170529..4170930	-	133	86359522	-	RHE_CH03942	-	hypothetical protein
3854	 59.51	0	4171244..4171984	-	246	86359523	-	RHE_CH03943	-	hypothetical protein
3855	 61.35	0	4172217..4174907	-	896	86359524	acnA	RHE_CH03944	-	aconitate hydratase
3856	 59.37	0	4175214..4175816	+	200	86359525	ccmA	RHE_CH03945	-	cytochrome c biogenesis protein CcmA
3857	 63.75	0	4175816..4176055	+	79	86359526	-	RHE_CH03946	-	hypothetical protein
3858	 67.27	+1	4176052..4176711	+	219	86359527	ccmB	RHE_CH03947	-	heme ABC transporter, permease protein (involved in cytochrome-c biogenesis)
3859	 64.30	0	4176759..4177520	+	253	86359528	ccmC	RHE_CH03948	-	heme ABC transporter, permease protein (involved in cytochrome-c biogenesis)
3860	 70.83	+2	4177524..4177691	+	55	86359529	cycX	RHE_CH03949	-	heme transporter protein (involved in cytochrome-c biogenesis)
3861	 61.90	0	4177688..4178296	+	202	86359530	cycY	RHE_CH03950	-	thiol disulfide interchange protein (involved in cytochrome-c biogenesis)
3862	 58.84	0	4178464..4179051	-	195	86359531	-	RHE_CH03951	-	hypothetical protein
3863	 58.29	-1	4179048..4179692	-	214	86359532	ispZ	RHE_CH03952	-	intracellular septation protein A
3864	 62.33	0	4179771..4181339	-	522	86359533	ftsY	RHE_CH03953	-	cell division protein
3865	 63.60	0	4181356..4182627	-	423	86359534	-	RHE_CH03954	-	hypothetical protein
3866	 64.57	0	4182624..4183529	-	301	86359535	dapF	RHE_CH03955	-	diaminopimelate epimerase
3867	 58.82	0	4183642..4183845	-	67	86359536	-	RHE_CH03956	-	hypothetical protein
3868	 65.08	+1	4184268..4185845	+	525	86359537	ffh	RHE_CH03957	-	signal recognition particle GTP-binding protein
3869	 58.57	0	4185862..4186182	+	106	86359538	tyrA	RHE_CH03958	-	chorismate mutase
3870	 64.23	0	4186231..4186599	+	122	86359539	rpsP	RHE_CH03959	-	30S ribosomal protein S16
3871	 59.48	0	4186629..4187282	+	217	86359540	rimM	RHE_CH03960	-	16S rRNA-processing protein
3872	 66.21	+1	4187321..4187983	+	220	86359541	trmD	RHE_CH03961	-	tRNA (guanine-N(1)-)-methyltransferase
3873	 63.69	0	4188196..4188732	+	178	86359542	rplS	RHE_CH03962	-	50S ribosomal protein L19
3874	 58.65	0	4188871..4189668	+	265	86359543	-	RHE_CH03963	-	putative amino acid ABC transporter, substrate-binding protein
3875	 59.71	0	4189684..4190502	+	272	86359544	-	RHE_CH03964	-	putative amino acid ABC transporter, permease protein
3876	 62.48	0	4190747..4192156	+	469	86359545	leuC	RHE_CH03965	-	isopropylmalate isomerase large subunit
3877	 59.49	0	4192263..4193168	-	301	86359546	-	RHE_CH03966	-	aldo/keto reductase family oxidoreductase
3878	 64.75	0	4193225..4193746	-	173	86359547	-	RHE_CH03967	-	hypothetical protein
3879	 60.53	0	4193915..4194598	+	227	86359548	-	RHE_CH03968	-	putative two-component response regulator protein
3880	 64.25	0	4194737..4195192	+	151	86359549	-	RHE_CH03969	-	putative cAMP-dependent kinase protein
3881	 60.82	0	4195199..4196002	-	267	86359550	xthA3	RHE_CH03970	-	exodeoxyribonuclease III protein
3882	 60.39	0	4196105..4196773	-	222	86359551	-	RHE_CH03971	-	putative outer membrane lipoproteins carrier protein
3883	 63.61	0	4196913..4199597	-	894	86359552	ftsK2	RHE_CH03972	-	cell division protein
3884	 62.39	0	4199846..4201273	-	475	86359553	amtB	RHE_CH03973	-	ammonium transporter protein
3885	 55.46	-1	4201301..4201639	-	112	86359554	glnK	RHE_CH03974	-	nitrogen regulatory protein P-II
3886	 62.82	0	4201862..4202746	-	294	86359555	tesB	RHE_CH03975	-	acyl-CoA thioesterase II protein
3887	 63.95	0	4202831..4204045	+	404	86359556	-	RHE_CH03976	-	2-octaprenyl-6-methoxyphenyl hydroxylase
3888	 58.20	-1	4204061..4204249	-	62	86359557	-	RHE_CH03977	-	hypothetical protein
3889	 63.46	0	4204259..4204945	-	228	86359558	lonD	RHE_CH03978	-	ATP-dependent protease LA 2 protein
3890	 63.28	0	4205020..4205994	-	324	86359559	trxA2	RHE_CH03979	-	thioredoxin protein
3891	 56.61	-1	4206051..4206716	-	221	86359560	-	RHE_CH03980	-	hypothetical protein
3892	 54.79	-2	4206933..4207235	-	100	86359561	-	RHE_CH03982	-	putative insertion sequence transposase protein
3893	 61.96	0	4207283..4207537	+	84	86359562	-	RHE_CH03983	-	hypothetical protein
3894	 63.41	0	4207600..4208244	-	214	86359563	-	RHE_CH03984	-	hypothetical protein
3895	 60.98	0	4208473..4209456	+	327	86359564	galE3	RHE_CH03985	-	UDP-glucose 4-epimerase protein
3896	 62.06	0	4209434..4210996	+	520	86359565	-	RHE_CH03986	-	sulfatase (sulfuric ester hydrolase) protein
3897	 62.25	0	4211079..4211576	-	165	86359566	-	RHE_CH03987	-	hypothetical protein
3898	 60.00	0	4211943..4212872	+	309	86359567	mocBch2	RHE_CH03988	-	rhizopine ABC transporter, substrate-binding protein
3899	 58.30	-1	4212942..4214483	+	513	86359568	-	RHE_CH03989	-	sugar ABC transporter, ATP-binding protein
3900	 60.72	0	4214518..4215543	+	341	86359569	-	RHE_CH03990	-	sugar ABC transporter, permease protein
3901	 63.08	0	4215711..4216769	+	352	86359570	-	RHE_CH03991	-	putative membrane dipeptidase protein
3902	 57.85	-1	4216868..4218511	+	547	86359571	dppAch3	RHE_CH03992	-	dipeptide ABC transporter, substrate-binding protein
3903	 62.17	0	4218530..4219597	+	355	86359572	dppBch3	RHE_CH03993	-	dipeptide ABC transporter, permease protein
3904	 65.67	+1	4219624..4220529	+	301	86359573	dppCch3	RHE_CH03994	-	dipeptide ABC transporter, permease protein
3905	 63.19	0	4220526..4221359	+	277	86359574	dppDch3	RHE_CH03995	-	dipeptide ABC transporter, ATP-binding protein
3906	 61.20	0	4221356..4222105	+	249	86359575	dppFch3	RHE_CH03996	-	dipeptide ABC transporter, ATP-binding protein
3907	 62.96	0	4223237..4231714	+	2825	86359576	ndvB	RHE_CH03997	-	beta-1,2-glucan production associated transmembrane protein
3908	 59.97	0	4231817..4233055	+	412	86359577	-	RHE_CH03998	-	putative protein require for succinylation of osmoregulated periplasmic glucans
3909	 57.06	-1	4233183..4233536	-	117	86359578	-	RHE_CH03999	-	lactoylglutathione lyase protein
3910	 61.73	0	4233809..4235590	-	593	86359579	ndvA	RHE_CH04000	-	cyclic beta-1,2-glucan ABC transporter
3911	 58.07	-1	4235959..4236714	+	251	86359580	-	RHE_CH04001	-	LuxR family transcriptional regulator
3912	 62.71	0	4236888..4240352	+	1154	86359581	pyc	RHE_CH04002	-	pyruvate carboxylase
3913	 58.99	0	4240541..4241113	+	190	86359582	-	RHE_CH04003	-	putative reductase protein
3914	 61.61	0	4241170..4241802	-	210	86359583	-	RHE_CH04004	-	amino acid ABC transporter ATP-binding protein
3915	 63.18	0	4241928..4242587	-	219	86359584	-	RHE_CH04005	-	amino acid ABC transporter permease
3916	 59.04	0	4242808..4243581	-	257	86359585	-	RHE_CH04006	-	amino acid ABC transporter substrate-binding protein
3917	 66.10	+1	4243913..4244623	+	236	86359586	-	RHE_CH04007	-	DeoR family transcriptional regulator
3918	 62.52	0	4244773..4245882	+	369	86359587	-	RHE_CH04008	-	putative transporter, permease protein
3919	 63.15	0	4245979..4247229	+	416	86359588	ispG	RHE_CH04009	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
3920	 61.58	0	4247246..4248307	+	353	86359589	hisCch3	RHE_CH04010	-	histidinol-phosphate aminotransferase
3921	 65.96	+1	4248316..4249311	-	331	86359590	ispA	RHE_CH04011	-	geranyltranstransferase protein
3922	 60.97	0	4249403..4250104	+	233	86359591	mtgA	RHE_CH04012	-	monofunctional biosynthetic peptidoglycan transglycosylase
3923	 61.27	0	4250200..4250922	+	240	86359592	-	RHE_CH04013	-	hypothetical protein
3924	 61.11	0	4250937..4251584	+	215	86359593	-	RHE_CH04014	-	glutathione S-transferase protein
3925	 60.22	0	4251739..4251924	+	61	86359594	rpmF	RHE_CH04015	-	50S ribosomal protein L32
3926	 55.88	-1	4252067..4252474	+	135	86359595	-	RHE_CH04016	-	hypothetical protein
3927	 56.25	-1	4252469..4253044	-	191	86359596	aniA	RHE_CH04017	-	carbon flux regulator protein
3928	 65.40	+1	4253282..4254463	+	393	86359597	phbAch	RHE_CH04018	-	acetyl-CoA acetyltransferase
3929	 58.82	0	4254535..4255260	+	241	86359598	phbB	RHE_CH04019	-	acetoacetyl-CoA reductase protein
3930	 56.86	-1	4255267..4255419	+	50	86359599	-	RHE_CH04020	-	hypothetical protein
3931	 67.82	+1	4255670..4255930	-	86	86359600	-	RHE_CH04021	-	hypothetical protein
3932	 64.10	0	4256943..4260101	+	1052	86359601	mgpS	RHE_CH04022	-	ATP-dependent DNA helicase protein
3933	 63.70	0	4260104..4260508	+	134	86359602	-	RHE_CH04023	-	putative heat shock protein (ribosome-associated)
3934	 53.98	-2	4260700..4261038	+	112	86359603	fdxA	RHE_CH04024	-	ferredoxin III protein
3935	 56.02	-1	4261433..4262005	+	190	86359604	-	RHE_CH04025	-	CarD family transcriptional regulator
3936	 62.50	0	4262380..4263243	+	287	86359605	rpoH2	RHE_CH04026	-	RNA polymerase factor sigma-32
3937	 63.88	0	4263295..4264836	-	513	86359606	-	RHE_CH04027	-	putative metalloprotease protein
3938	 63.27	0	4265229..4266761	-	510	86359607	-	RHE_CH04028	-	putative transporter, permease protein
3939	 65.30	+1	4266966..4267403	+	145	86359608	-	RHE_CH04029	-	MarR family transcriptional regulator
3940	 64.21	0	4267476..4268126	+	216	86359609	-	RHE_CH04030	-	hypothetical protein
3941	 63.87	0	4268130..4269950	+	606	86359610	-	RHE_CH04031	-	putative ABC transporter, ATP-binding protein
3942	 61.98	0	4270014..4271870	-	618	86359611	-	RHE_CH04032	-	ABC transporter permease/ATP-binding protein
3943	 57.34	-1	4272216..4273073	+	285	86359612	metA	RHE_CH04033	-	homoserine O-succinyltransferase
3944	 62.27	0	4273192..4274214	+	340	86359613	galM	RHE_CH04034	-	aldose-1-epimerase protein
61.61	MEAN

3.19	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.