IslandPathversion 1.0

IslandPath Analysis: Rhizobium etli CFN 42



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 61.61 STD DEV: 3.19
Rhizobium etli CFN 42, complete genome - 1..4381608
4035 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3447	 61.51	0	3714791..3716401	+	536	86359116	-	RHE_CH03525	-	putative chemotaxis sensory transducer protein
3448	 62.87	0	3716524..3717657	-	377	86359117	-	RHE_CH03526	-	hypothetical protein
3449	 61.96	0	3717617..3718360	-	247	86359118	thiEch	RHE_CH03527	-	thiamine-phosphate pyrophosphorylase
3450	 63.53	0	3718379..3719143	+	254	86359119	-	RHE_CH03528	-	putative transporter, permease protein
3451	 59.39	0	3719211..3719471	+	86	86359120	-	RHE_CH03529	-	transcriptional regulator protein
3452	 56.37	-1	3720064..3720267	+	67	86359121	-	RHE_CH03530	-	hypothetical protein
3453	 63.93	0	3720341..3720778	+	145	86359122	purE	RHE_CH03531	-	phosphoribosylaminoimidazole carboxylase catalytic subunit protein
3454	 64.53	0	3720724..3721845	+	373	86359123	purK	RHE_CH03532	-	phosphoribosylaminoimidazole carboxylase ATPase subunit
3455	 56.35	-1	3722018..3722143	+	41	86359124	rpmJ	RHE_CH03533	-	50S ribosomal protein L36
3456	 57.89	-1	3722253..3722867	+	204	86359125	-	RHE_CH03534	-	hypothetical protein
3457	 63.75	0	3723078..3724004	+	308	86359126	-	RHE_CH03535	-	lactone-specific esterase protein
3458	 62.75	0	3724129..3725865	+	578	86359127	ggt2	RHE_CH03536	-	gamma-glutamyltranspeptidase protein
3459	 66.97	+1	3725988..3726962	+	324	86359128	-	RHE_CH03537	-	threonine dehydratase protein
3460	 65.20	+1	3727018..3727971	-	317	86359129	-	RHE_CH03538	-	LysR family transcriptional regulator
3461	 61.19	0	3728032..3728451	+	139	86359130	-	RHE_CH03539	-	hypothetical protein
3462	 61.98	0	3728448..3729002	+	184	86359131	-	RHE_CH03540	-	hypothetical protein
3463	 60.66	0	3729005..3729637	-	210	86359132	-	RHE_CH03541	-	amino acid efflux LysE family protein
3464	 64.73	0	3729765..3731207	-	480	86359133	pykA	RHE_CH03542	-	pyruvate kinase
3465	 60.08	0	3731204..3731689	-	161	86359134	-	RHE_CH03543	-	hypothetical protein
3466	 62.23	0	3731888..3732676	+	262	86359135	-	RHE_CH03544	-	putative N-formylglutamate amidohydrolase protein
3467	 59.80	0	3732703..3733008	+	101	86359136	-	RHE_CH03545	-	hypothetical protein
3468	 56.82	-1	3733100..3733363	+	87	86359137	-	RHE_CH03546	-	hypothetical protein
3469	 64.06	0	3733518..3735359	-	613	86359138	-	RHE_CH03547	-	hypothetical protein
3470	 61.74	0	3735539..3737080	-	513	86359139	tacA	RHE_CH03548	-	sigma-54-dependent transcriptional regulator (activator) protein
3471	 59.43	0	3737045..3739144	+	699	86359140	pepF	RHE_CH03549	-	oligoendopeptidase F protein
3472	 60.71	0	3739361..3740518	+	385	86359141	pabB	RHE_CH03550	-	para-aminobenzoate synthase component I
3473	 64.31	0	3740467..3741144	+	225	86359142	-	RHE_CH03551	-	hypothetical protein
3474	 62.11	0	3741147..3741431	+	94	86359143	-	RHE_CH03552	-	hypothetical protein
3475	 61.29	0	3741598..3743049	+	483	86359144	hss	RHE_CH03553	-	homospermidine synthase protein
3476	 59.08	0	3743220..3743588	+	122	86359145	omp3	RHE_CH03554	-	outer membrane lipoprotein
3477	 62.43	0	3743874..3745880	+	668	86359146	-	RHE_CH03555	-	5`-nucleotidase protein
3478	 59.13	0	3746004..3747038	+	344	86359147	hemH	RHE_CH03556	-	ferrochelatase
3479	 62.98	0	3747182..3748213	+	343	86359148	-	RHE_CH03557	-	putative membrane protease subunit protein
3480	 64.04	0	3748217..3748672	+	151	86359149	-	RHE_CH03558	-	hypothetical protein
3481	 62.05	0	3748673..3749668	-	331	86359150	kpsF	RHE_CH03559	-	polysialic acid capsule expression protein
3482	 64.32	0	3749809..3751344	+	511	86359151	-	RHE_CH03560	-	hypothetical protein
3483	 59.35	0	3751401..3752288	-	295	86359152	exoN	RHE_CH03561	-	UTP-glucose-1-phosphate uridylyltransferase protein
3484	 60.62	0	3752492..3753715	+	407	86359153	-	RHE_CH03562	-	membrane-bound lytic murein transglycosylase protein
3485	 62.77	0	3753807..3755039	+	410	86359154	-	RHE_CH03563	-	hypothetical protein
3486	 59.17	0	3755065..3755691	-	208	86359155	-	RHE_CH03564	-	hypothetical protein
3487	 64.33	0	3755904..3757358	-	484	86359156	gltD	RHE_CH03565	-	glutamate synthase subunit beta
3488	 62.83	0	3757583..3762304	-	1573	86359157	gltB	RHE_CH03566	-	glutamate synthase large subunit protein
3489	 55.41	-1	3762276..3762719	-	147	86359158	-	RHE_CH03567	-	hypothetical protein
3490	 63.53	0	3762846..3763898	+	350	86359159	-	RHE_CH03568	-	threonine aldolase protein
3491	 63.51	0	3763946..3764833	-	295	86359160	-	RHE_CH03569	-	LysR family transcriptional regulator
3492	 61.99	0	3764888..3765892	+	334	86359161	-	RHE_CH03570	-	putative Na+/bile acid cotransporter protein
3493	 60.08	0	3765969..3766439	-	156	86359162	ibpA	RHE_CH03571	-	molecular chaperone small heat shock protein
3494	 63.79	0	3766840..3767814	+	324	86359163	pldB	RHE_CH03572	-	lysophospholipase L2 protein
3495	 62.35	0	3767885..3768694	-	269	86359164	-	RHE_CH03573	-	monophosphatase protein
3496	 62.59	0	3768939..3769820	-	293	86359165	-	RHE_CH03574	-	N-formylglutamate amidohydrolase protein
3497	 57.02	-1	3770009..3770371	+	120	86359166	-	RHE_CH03575	-	two-component response regulator protein
3498	 59.62	0	3770908..3771219	+	103	86359167	-	RHE_CH03577	-	hypothetical protein
3499	 60.44	0	3771629..3772672	+	347	86359168	ropAch3	RHE_CH03578	-	porin outer membrane protein
3500	 62.83	0	3773050..3773544	+	164	86359169	-	RHE_CH03579	-	hypothetical protein
3501	 69.49	+2	3773551..3774258	-	235	86359170	-	RHE_CH03580	-	hypothetical protein
3502	 60.34	0	3774925..3776316	+	463	86359171	-	RHE_CH03581	-	hypothetical protein
3503	 65.68	+1	3776759..3778276	-	505	86359172	-	RHE_CH03582	-	hypothetical protein
3504	 60.57	0	3778363..3778854	-	163	86359173	-	RHE_CH03583	-	hypothetical protein
3505	 63.18	0	3778851..3779825	-	324	86359174	-	RHE_CH03584	-	hypothetical protein
3506	 62.22	0	3780088..3781212	-	374	86359175	-	RHE_CH03585	-	iron ABC transporter, substrate-binding protein
3507	 61.80	0	3781434..3783302	+	622	86359176	cyaFch2	RHE_CH03586	-	adenylate cyclase protein
3508	 62.09	0	3783396..3784073	+	225	86359177	-	RHE_CH03587	-	two-component response regulator protein
3509	 66.38	+1	3784070..3785452	+	460	86359178	-	RHE_CH03588	-	two-component sensor histidine kinase protein
3510	 63.69	0	3785563..3788886	+	1107	86359179	-	RHE_CH03589	-	putative transglutaminase-like protein
3511	 65.55	+1	3788926..3791343	+	805	86359180	-	RHE_CH03590	-	hypothetical protein
3512	 63.04	0	3791373..3792227	+	284	86359181	-	RHE_CH03591	-	putative transglutaminase-like protein
3513	 56.55	-1	3792342..3793577	+	411	86359182	-	RHE_CH03592	-	hypothetical protein
3514	 61.79	0	3793850..3796312	+	820	86359183	glgP	RHE_CH03593	-	glycogen phosphorylase protein
3515	 61.55	0	3796309..3798516	+	735	86359184	glgBch	RHE_CH03594	-	glycogen branching enzyme
3516	 60.02	0	3798535..3799797	+	420	86359185	glgC	RHE_CH03595	-	glucose-1-phosphate adenylyltransferase
3517	 61.96	0	3799864..3801243	+	459	86359186	glgA	RHE_CH03596	-	glycogen synthase
3518	 61.89	0	3801250..3802881	+	543	86359187	pgm	RHE_CH03597	-	phosphoglucomutase
3519	 62.92	0	3802894..3804870	+	658	86359188	glgXch	RHE_CH03598	-	glycosyl hydrolase (glycogen debranching) protein
3520	 59.51	0	3804959..3805447	+	162	86359189	nodN	RHE_CH03599	-	dehydratase nodulation protein
3521	 68.31	+2	3805594..3806142	-	182	86359190	soxGch	RHE_CH03600	-	sarcosine oxidase gamma subunit protein
3522	 63.96	0	3806135..3809128	-	997	86359191	soxAch	RHE_CH03601	-	sarcosine oxidase alpha subunit protein
3523	 60.53	0	3809125..3809466	-	113	86359192	soxDch	RHE_CH03602	-	sarcosine oxidase delta subunit protein
3524	 62.68	0	3809576..3810829	-	417	86359193	soxBch	RHE_CH03603	-	sarcosine oxidase beta subunit protein
3525	 62.43	0	3811121..3812134	+	337	86359194	-	RHE_CH03604	-	hypothetical protein
3526	 62.60	0	3812140..3814476	-	778	86359195	cyaD	RHE_CH03605	-	adenylate cyclase protein
3527	 60.14	0	3814725..3816194	+	489	86359196	-	RHE_CH03606	-	putative adenylate cyclase protein
3528	 59.15	0	3816351..3816563	+	70	86359197	rpsU	RHE_CH03607	-	30S ribosomal protein S21
3529	 60.21	0	3816699..3817565	+	288	86359198	-	RHE_CH03608	-	O-linked GlcNAc transferase protein
3530	 62.31	0	3817991..3819643	+	550	86359199	-	RHE_CH03609	-	putative two-component sensor histidine kinase protein
3531	 61.90	0	3819702..3820184	+	160	86359200	-	RHE_CH03610	-	hypothetical protein
3532	 62.37	0	3820214..3821608	-	464	86359201	pntB	RHE_CH03611	-	NAD(P)(+) transhydrogenase (AB-specific), beta subunit protein
3533	 62.16	0	3821616..3822014	-	132	86359202	pntA1	RHE_CH03612	-	NAD(P)(+) transhydrogenase (AB-specific), alpha subunit protein
3534	 65.40	+1	3822014..3823279	-	421	86359203	pntA2	RHE_CH03613	-	NAD(P)(+) transhydrogenase (AB-specific), alpha subunit protein
3535	 58.67	0	3823463..3823687	-	74	86359204	-	RHE_CH03614	-	hypothetical protein
3536	 59.97	0	3823911..3824567	-	218	86359205	-	RHE_CH03615	-	hypothetical protein
3537	 60.67	0	3824807..3827326	-	839	86359206	-	RHE_CH03616	-	putative sensory box/GGDEF family protein
3538	 58.52	0	3827512..3828051	+	179	86359207	-	RHE_CH03617	-	putative TRAP mannitol/C4-dicarboxylate transporter, permease protein
3539	 63.32	0	3828102..3829565	+	487	86359208	-	RHE_CH03618	-	putative TRAP mannitol/C4-dicarboxylate transporter, permease protein
3540	 60.07	0	3829653..3830759	-	368	86359209	-	RHE_CH03619	-	TRAP mannitol/C4-dicarboxylate transporter, substrate-binding protein
3541	 62.48	0	3830778..3831827	+	349	86359210	-	RHE_CH03620	-	glutamine amidotransferase protein
3542	 61.96	0	3831856..3832812	-	318	86359211	-	RHE_CH03621	-	2-hydroxyacid dehydrogenase family protein
3543	 64.18	0	3832841..3833884	-	347	86359212	-	RHE_CH03622	-	LacI family transcription regulator
3544	 60.14	0	3833979..3834545	-	188	86359213	-	RHE_CH03623	-	MarR family transcriptional regulator
3545	 63.62	0	3834577..3835365	+	262	86359214	-	RHE_CH03624	-	creatinine amidohydrolase (creatininase) protein
3546	 60.75	0	3835510..3836607	+	365	86359215	-	RHE_CH03625	-	cobalamin synthesis protein P47K family
61.61	MEAN

3.19	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.