IslandPathversion 1.0

IslandPath Analysis: Rhizobium etli CFN 42



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 61.61 STD DEV: 3.19
Rhizobium etli CFN 42, complete genome - 1..4381608
4035 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3364	 64.97	+1	3622671..3623849	+	392	86359033	ackA	RHE_CH03441	-	acetate kinase
3365	 61.85	0	3623921..3626308	+	795	86359034	-	RHE_CH03442	-	putative phosphoketolase
3366	 59.03	0	3626357..3627247	-	296	86359035	pobR	RHE_CH03443	-	AraC family transcriptional regulator
3367	 61.45	0	3627348..3628535	+	395	86359036	pobA	RHE_CH03444	-	4-hydroxybenzoate 3-monooxygenase
3368	 62.83	0	3628721..3629893	+	390	86359037	-	RHE_CH03445	-	putative branched-chain amino acid ABC transporter, substrate-binding protein
3369	 61.90	0	3630089..3630823	+	244	86359038	-	RHE_CH03446	-	branched chain amino acid ABC transporter permease
3370	 62.19	0	3630825..3631829	+	334	86359039	-	RHE_CH03447	-	branched chain amino acid ABC transporter permease
3371	 62.22	0	3631826..3632590	+	254	86359040	-	RHE_CH03448	-	branched chain amino acid ABC transporter ATP-binding protein
3372	 64.99	+1	3632571..3633287	+	238	86359041	-	RHE_CH03449	-	branched chain amino acid ABC transporter ATP-binding protein
3373	 56.04	-1	3633618..3634445	+	275	86359042	rapB3	RHE_CH03450	-	autoaggregation protein (adhering protein)
3374	 64.71	0	3635085..3636311	-	408	86359043	trmU	RHE_CH03452	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
3375	 59.55	0	3636781..3637047	+	88	86359044	-	RHE_CH03453	-	hypothetical protein
3376	 60.96	0	3637128..3638723	-	531	86359045	serA	RHE_CH03454	-	D-3-phosphoglycerate dehydrogenase
3377	 63.44	0	3638806..3639984	-	392	86359046	serC	RHE_CH03455	-	phosphoserine aminotransferase
3378	 62.74	0	3640175..3641014	-	279	86359047	-	RHE_CH03456	-	heat resistant agglutinin 1 protein
3379	 62.23	0	3641273..3642625	-	450	86359048	-	RHE_CH03457	-	phosphosugar isomerase protein
3380	 61.39	0	3642867..3644798	-	643	86359049	ftsH	RHE_CH03458	-	cell division metalloproteinase protein
3381	 62.42	0	3644896..3646356	-	486	86359050	-	RHE_CH03459	-	putative cell cycle protein MesJ/cytosine deaminase-related protein
3382	 62.13	0	3646368..3647117	-	249	86359051	-	RHE_CH03460	-	hypothetical protein
3383	 64.99	+1	3647517..3648053	-	178	86359052	omp2	RHE_CH03461	-	outer membrane lipoprotein
3384	 62.09	0	3648205..3649515	-	436	86359053	tolB	RHE_CH03462	-	translocation protein TolB
3385	 52.51	-2	3649538..3649975	-	145	86359054	-	RHE_CH03463	-	putative signal peptide protein
3386	 58.53	0	3649976..3651118	-	380	86359055	tolA	RHE_CH03464	-	signal peptide protein
3387	 62.94	0	3651127..3651582	-	151	86359056	tolR	RHE_CH03465	-	protein transporter protein
3388	 62.92	0	3651601..3652320	-	239	86359057	tolQ	RHE_CH03466	-	protein transporter protein
3389	 61.84	0	3652686..3653141	-	151	86359058	-	RHE_CH03467	-	4-hydroxybenzoyl-CoA thioesterase protein
3390	 59.87	0	3653305..3654525	+	406	86359059	sqdB	RHE_CH03468	-	sulfolipid (UDP-sulfoquinovose) biosynthesis protein
3391	 59.27	0	3654721..3655545	+	274	86359060	sqdD	RHE_CH03469	-	glycosyltransferase (sulfolipid biosynthesis) protein
3392	 64.64	0	3655620..3656507	+	295	86359061	sqdC	RHE_CH03470	-	sulfolipid biosynthesis protein
3393	 61.86	0	3656537..3657181	+	214	86359062	-	RHE_CH03471	-	5-formyltetrahydrofolate cyclo-ligase protein
3394	 63.55	0	3657209..3658009	+	266	86359063	-	RHE_CH03472	-	hypothetical protein
3395	 59.50	0	3658231..3658956	+	241	86359064	-	RHE_CH03473	-	hypothetical protein
3396	 57.14	-1	3658987..3659532	-	181	86359065	-	RHE_CH03474	-	hypothetical protein
3397	 59.97	0	3659632..3660378	+	248	86359066	-	RHE_CH03475	-	hypothetical protein
3398	 63.37	0	3660596..3661597	-	333	86359067	-	RHE_CH03476	-	oxidoreductase protein
3399	 62.48	0	3661721..3664036	-	771	86359068	-	RHE_CH03477	-	methyl-accepting chemotaxis protein
3400	 61.76	0	3664279..3664788	+	169	86359069	ruvC	RHE_CH03478	-	Holliday junction resolvase
3401	 57.58	-1	3664843..3665106	+	87	86359070	-	RHE_CH03479	-	putative regulator protein of stationary/sporulation gene expression
3402	 60.43	0	3665087..3665503	+	138	86359071	-	RHE_CH03480	-	putative nucleic acid-binding protein
3403	 65.04	+1	3665517..3666131	+	204	86359072	ruvA	RHE_CH03481	-	Holliday junction DNA helicase motor protein
3404	 64.36	0	3666214..3667254	+	346	86359073	ruvB	RHE_CH03482	-	Holliday junction DNA helicase B
3405	 62.54	0	3667309..3668157	+	282	86359074	-	RHE_CH03483	-	phosphohydrolase protein
3406	 60.11	0	3668523..3669086	+	187	86359075	-	RHE_CH03484	-	hypothetical protein
3407	 61.46	0	3669164..3670546	-	460	86359076	atvA	RHE_CH03485	-	acid tolerance and virulence protein
3408	 61.79	0	3670543..3673146	-	867	86359077	-	RHE_CH03486	-	hypothetical protein
3409	 61.82	0	3673370..3675517	-	715	86359078	-	RHE_CH03487	-	small-conductance mechanosensitive channel transmembrane protein
3410	 63.47	0	3675696..3676727	-	343	86359079	-	RHE_CH03488	-	6-phosphogluconate dehydrogenase-like protein
3411	 61.28	0	3676843..3677325	-	160	86359080	-	RHE_CH03489	-	hypothetical protein
3412	 61.01	0	3677381..3677716	+	111	86359081	-	RHE_CH03490	-	ArsR family transcriptional regulator
3413	 65.36	+1	3677794..3678330	+	178	86359082	-	RHE_CH03491	-	hypothetical protein
3414	 63.01	0	3678429..3679412	+	327	86359083	-	RHE_CH03492	-	putative UDP-glucose 4-epimerase protein
3415	 64.29	0	3679795..3680172	-	125	86359084	-	RHE_CH03493	-	hypothetical protein
3416	 61.96	0	3680189..3680464	-	91	86359085	-	RHE_CH03494	-	hypothetical protein
3417	 63.02	0	3680825..3682771	+	648	86359086	tkt	RHE_CH03495	-	transketolase
3418	 63.20	0	3682853..3683863	+	336	86359087	gap	RHE_CH03496	-	glyceraldehyde 3-phosphate dehydrogenase protein
3419	 58.41	-1	3684003..3684317	+	104	86359088	-	RHE_CH03497	-	hypothetical protein
3420	 62.83	0	3685042..3686916	+	624	86359089	-	RHE_CH03498	-	potassium/proton antiporter
3421	 63.64	0	3686933..3688189	+	418	86359090	pgk	RHE_CH03499	-	phosphoglycerate kinase
3422	 62.07	0	3688477..3689499	+	340	86359091	fbaB	RHE_CH03500	-	fructose-bisphosphate aldolase protein
3423	 63.53	0	3689852..3690775	+	307	86359092	phzF	RHE_CH03501	-	phenazine biosynthesis protein
3424	 60.00	0	3690805..3690969	-	54	86359093	-	RHE_CH03502	-	hypothetical protein
3425	 63.93	0	3691142..3692422	+	426	86359094	-	RHE_CH03503	-	transporter permease protein
3426	 58.85	0	3692578..3692769	+	63	86359095	-	RHE_CH03504	-	hypothetical protein
3427	 62.40	0	3693161..3693676	+	171	86359096	-	RHE_CH03505	-	hypothetical protein
3428	 59.01	0	3693815..3694036	-	73	86359097	rpmE	RHE_CH03506	-	50S ribosomal protein L31
3429	 66.78	+1	3694304..3696031	+	575	86359098	-	RHE_CH03507	-	multidrug ABC transporter ATP-binding protein
3430	 64.25	0	3696175..3697167	+	330	86359099	-	RHE_CH03508	-	hypothetical protein
3431	 53.44	-2	3697329..3697517	+	62	86359100	-	RHE_CH03509	-	hypothetical protein
3432	 63.13	0	3697787..3698125	+	112	86359101	-	RHE_CH03510	-	hypothetical protein
3433	 66.99	+1	3698133..3699383	+	416	86359102	-	RHE_CH03511	-	RNA polymerase ECF-subfamily sigma factor
3434	 64.24	0	3699384..3700415	-	343	86359103	-	RHE_CH03512	-	hypothetical protein
3435	 63.41	0	3700419..3701522	-	367	86359104	-	RHE_CH03513	-	hypothetical protein
3436	 63.30	0	3701635..3702435	-	266	86359105	suhBch	RHE_CH03514	-	myo-inositol-1(or 4)-monophosphatase protein
3437	 64.85	+1	3702634..3703731	-	365	86359106	cheBch2	RHE_CH03515	-	chemotaxis-specific methylesterase protein
3438	 58.62	0	3703740..3704597	-	285	86359107	cheRch2	RHE_CH03516	-	chemotaxis methyltransferase protein
3439	 62.26	0	3704625..3705101	-	158	86359108	cheW3	RHE_CH03517	-	chemotaxis signal transduction protein
3440	 62.03	0	3705104..3707131	-	675	86359109	-	RHE_CH03518	-	putative methyl-accepting chemotaxis protein
3441	 62.51	0	3707152..3708954	-	600	86359110	-	RHE_CH03519	-	putative methyl-accepting chemotaxis protein
3442	 62.56	0	3709338..3711041	-	567	86359111	-	RHE_CH03520	-	putative methyl-accepting chemotaxis protein
3443	 60.39	0	3711073..3711582	-	169	86359112	cheW4	RHE_CH03521	-	chemotaxis signal transduction protein
3444	 63.55	0	3711579..3713630	-	683	86359113	-	RHE_CH03522	-	putative chemotaxis two-component sensor histidine kinase protein
3445	 58.54	0	3713627..3713995	-	122	86359114	cheY3	RHE_CH03523	-	chemotaxis two-component response regulator protein
3446	 43.94	-2	3713992..3714321	-	109	86359115	-	RHE_CH03524	-	hypothetical protein
3447	 61.51	0	3714791..3716401	+	536	86359116	-	RHE_CH03525	-	putative chemotaxis sensory transducer protein
3448	 62.87	0	3716524..3717657	-	377	86359117	-	RHE_CH03526	-	hypothetical protein
3449	 61.96	0	3717617..3718360	-	247	86359118	thiEch	RHE_CH03527	-	thiamine-phosphate pyrophosphorylase
3450	 63.53	0	3718379..3719143	+	254	86359119	-	RHE_CH03528	-	putative transporter, permease protein
3451	 59.39	0	3719211..3719471	+	86	86359120	-	RHE_CH03529	-	transcriptional regulator protein
3452	 56.37	-1	3720064..3720267	+	67	86359121	-	RHE_CH03530	-	hypothetical protein
3453	 63.93	0	3720341..3720778	+	145	86359122	purE	RHE_CH03531	-	phosphoribosylaminoimidazole carboxylase catalytic subunit protein
3454	 64.53	0	3720724..3721845	+	373	86359123	purK	RHE_CH03532	-	phosphoribosylaminoimidazole carboxylase ATPase subunit
3455	 56.35	-1	3722018..3722143	+	41	86359124	rpmJ	RHE_CH03533	-	50S ribosomal protein L36
3456	 57.89	-1	3722253..3722867	+	204	86359125	-	RHE_CH03534	-	hypothetical protein
3457	 63.75	0	3723078..3724004	+	308	86359126	-	RHE_CH03535	-	lactone-specific esterase protein
3458	 62.75	0	3724129..3725865	+	578	86359127	ggt2	RHE_CH03536	-	gamma-glutamyltranspeptidase protein
3459	 66.97	+1	3725988..3726962	+	324	86359128	-	RHE_CH03537	-	threonine dehydratase protein
3460	 65.20	+1	3727018..3727971	-	317	86359129	-	RHE_CH03538	-	LysR family transcriptional regulator
3461	 61.19	0	3728032..3728451	+	139	86359130	-	RHE_CH03539	-	hypothetical protein
3462	 61.98	0	3728448..3729002	+	184	86359131	-	RHE_CH03540	-	hypothetical protein
3463	 60.66	0	3729005..3729637	-	210	86359132	-	RHE_CH03541	-	amino acid efflux LysE family protein
61.61	MEAN

3.19	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.