IslandPathversion 1.0

IslandPath Analysis: Rhizobium etli CFN 42



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 61.61 STD DEV: 3.19
Rhizobium etli CFN 42, complete genome - 1..4381608
4035 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3203	 60.22	0	3436014..3436571	-	185	86358872	rpoE4	RHE_CH03273	-	RNA polymerase sigma factor
3204	 56.04	-1	3436581..3436787	-	68	86358873	-	RHE_CH03274	-	hypothetical protein
3205	 56.23	-1	3437035..3437829	+	264	86358874	tcrX	RHE_CH03275	-	two-component response regulator
3206	 58.49	0	3438060..3439013	+	317	86358875	tcrY	RHE_CH03276	-	two-component sensor histidine kinase protein
3207	 63.58	0	3439426..3440787	+	453	86358876	-	RHE_CH03277	-	putative oxidoreductase
3208	 63.09	0	3440803..3442116	+	437	86358877	-	RHE_CH03278	-	dihydropyrimidine dehydrogenase
3209	 56.56	-1	3442276..3444264	+	662	86358878	-	RHE_CH03279	-	putative 1,4-alpha-glucan branching enzyme protein
3210	 53.56	-2	3444334..3444768	-	144	86358879	-	RHE_CH03280	-	hypothetical protein
3211	 57.28	-1	3444833..3445237	-	134	86358880	-	RHE_CH03281	-	putative dehydrogenase protein
3212	 58.39	-1	3445415..3447094	+	559	86358881	malL	RHE_CH03282	-	oligosaccharide alpha-1,6-glucosidase protein
3213	 63.90	0	3447193..3448203	-	336	86358882	ftrA	RHE_CH03283	-	transcriptional activator FtrA
3214	 64.23	0	3448266..3448676	+	136	86358883	-	RHE_CH03284	-	putative rhodanese-related sulfurtransferase protein
3215	 63.54	0	3448716..3449738	-	340	86358884	-	RHE_CH03285	-	alcohol dehydrogenase protein
3216	 60.23	0	3449715..3450740	+	341	86358885	-	RHE_CH03286	-	LysR family transcriptional regulator
3217	 59.26	0	3450839..3451270	+	143	86358886	-	RHE_CH03287	-	hypothetical protein
3218	 62.50	0	3451273..3451680	+	135	86358887	-	RHE_CH03288	-	two-component response regulator protein
3219	 60.06	0	3451545..3452195	-	216	86358888	-	RHE_CH03289	-	TetR family transcriptional regulator
3220	 62.84	0	3452495..3453748	+	417	162329628	amaB	RHE_CH03290	-	allantoate amidohydrolase
3221	 58.54	0	3453748..3454338	+	196	86358890	-	RHE_CH03291	-	hypothetical protein
3222	 62.27	0	3454335..3455789	+	484	86358891	dht	RHE_CH03292	-	dihydropyrimidinase
3223	 64.01	0	3455848..3456261	-	137	86358892	-	RHE_CH03293	-	hypothetical protein
3224	 63.23	0	3456356..3457141	+	261	86358893	-	RHE_CH03294	-	nitrate/sulfonate ABC transporter, ATP-binding protein
3225	 61.29	0	3457376..3458305	+	309	86358894	-	RHE_CH03295	-	nitrate/sulfonate ABC transporter, permease protein
3226	 64.01	0	3458302..3459429	+	375	86358895	-	RHE_CH03296	-	nitrate/sulfonate ABC transporter, permease protein
3227	 60.15	0	3459525..3460460	+	311	86358896	-	RHE_CH03297	-	nitrate/sulfonate ABC transporter, substrate-binding protein
3228	 63.06	0	3460849..3462039	+	396	86358897	-	RHE_CH03298	-	HlyD family protein secretion protein
3229	 61.40	0	3462053..3465373	+	1106	86358898	-	RHE_CH03299	-	acriflavin resistance efflux transporter
3230	 63.24	0	3465472..3466083	-	203	86358899	ureG	RHE_CH03300	-	urease accessory protein
3231	 65.18	+1	3466172..3466843	-	223	86358900	ureF	RHE_CH03301	-	urease accessory protein
3232	 57.35	-1	3466849..3467535	-	228	86358901	ureE	RHE_CH03302	-	urease accessory protein
3233	 61.03	0	3467519..3468370	-	283	86358902	-	RHE_CH03303	-	urease-associated protein
3234	 60.71	0	3468714..3469385	-	223	86358903	-	RHE_CH03304	-	urease-associated protein
3235	 63.40	0	3469418..3471130	-	570	86358904	ureC	RHE_CH03305	-	urease subunit alpha
3236	 63.38	0	3471134..3471772	-	212	86358905	-	RHE_CH03306	-	urease-associated protein
3237	 60.25	0	3471774..3472178	-	134	86358906	-	RHE_CH03307	-	urease-associated protein
3238	 65.36	+1	3472196..3472501	-	101	86358907	ureB	RHE_CH03308	-	urease subunit beta
3239	 62.70	0	3472512..3472763	-	83	86358908	-	RHE_CH03309	-	urease-associated protein
3240	 62.38	0	3472773..3473075	-	100	86358909	ureA	RHE_CH03310	-	urease subunit gamma
3241	 65.48	+1	3473104..3473775	-	223	86358910	ureD	RHE_CH03311	-	urease accessory protein
3242	 62.79	0	3474073..3474768	-	231	86358911	-	RHE_CH03312	-	urea or short-chain amide ABC transporter, ATP-binding protein
3243	 60.31	0	3474788..3475306	-	172	86358912	-	RHE_CH03313	-	hypothetical protein
3244	 59.66	0	3475382..3476137	-	251	86358913	-	RHE_CH03314	-	urea or short-chain amide ABC transporter, ATP-binding protein
3245	 63.14	0	3476143..3477306	-	387	86358914	-	RHE_CH03315	-	urea or short-chain amide ABC transporter, permease protein
3246	 62.03	0	3477303..3478919	-	538	86358915	-	RHE_CH03316	-	urea or short-chain amide ABC transporter, permease protein
3247	 59.47	0	3479029..3480321	-	430	86358916	-	RHE_CH03317	-	urea or short-chain amide ABC transporter, substrate-binding protein
3248	 62.49	0	3480503..3482587	-	694	86358917	-	RHE_CH03318	-	putative phosphatase protein
3249	 63.94	0	3485963..3486880	+	305	86358918	-	RHE_CH03320	-	two-component response regulator protein
3250	 60.96	0	3487057..3488178	-	373	86358919	braC2	RHE_CH03321	-	amino acid ABC transporter, substrate-binding protein
3251	 55.08	-2	3488299..3488652	-	117	86358920	-	RHE_CH03322	-	hypothetical protein
3252	 61.42	0	3488672..3489415	-	247	86358921	braG	RHE_CH03323	-	amino acid ABC transporter, ATP-binding protein
3253	 58.45	0	3489415..3490290	-	291	86358922	braF	RHE_CH03324	-	amino acid ABC transporter, ATP-binding protein
3254	 58.84	0	3490290..3491681	-	463	86358923	braE	RHE_CH03325	-	amino acid ABC transporter, permease protein
3255	 58.14	-1	3491686..3492588	-	300	86358924	braD	RHE_CH03326	-	amino acid ABC transporter, permease protein
3256	 63.03	0	3493124..3493921	+	265	86358925	pssB	RHE_CH03327	-	exopolysaccharide production protein
3257	 60.86	0	3494599..3495201	+	200	86358926	pssA2	RHE_CH03328	-	exopolysaccharide production protein
3258	 58.22	-1	3495301..3495750	-	149	86358927	-	RHE_CH03329	-	hypothetical protein
3259	 61.16	0	3495806..3496132	+	108	86358928	-	RHE_CH03330	-	hypothetical protein
3260	 61.11	0	3496152..3496655	-	167	86358929	-	RHE_CH03331	-	hypothetical protein
3261	 61.15	0	3496654..3497034	+	126	86358930	-	RHE_CH03332	-	putative acetyltransferase protein
3262	 54.80	-2	3497191..3497544	-	117	86358931	-	RHE_CH03333	-	hypothetical protein
3263	 57.26	-1	3497982..3498683	+	233	86358932	ctrA	RHE_CH03334	-	two-component response regulator protein controls chromosomal replication initiation
3264	 57.30	-1	3498861..3499223	-	120	86358933	-	RHE_CH03335	-	two-component response regulator protein
3265	 61.73	0	3499342..3499989	-	215	86358934	-	RHE_CH03336	-	hypothetical protein
3266	 60.88	0	3500184..3500771	+	195	86358935	-	RHE_CH03337	-	hypothetical protein
3267	 63.46	0	3501050..3502048	+	332	86358936	-	RHE_CH03338	-	hypothetical protein
3268	 64.36	0	3502052..3502873	-	273	86358937	-	RHE_CH03339	-	RNA methylase protein
3269	 61.98	0	3502880..3503263	-	127	86358938	-	RHE_CH03340	-	hypothetical protein
3270	 62.54	0	3503266..3504330	+	354	86358939	rluD	RHE_CH03341	-	pseudouridylate synthase, ribosomal large subunit D protein
3271	 61.39	0	3504521..3505429	+	302	86358940	rpoH1	RHE_CH03342	-	RNA polymerase factor sigma-32
3272	 64.13	0	3505653..3508139	-	828	86358941	-	RHE_CH03343	-	hypothetical protein
3273	 62.36	0	3508200..3509498	-	432	86358942	purA	RHE_CH03344	-	adenylosuccinate synthetase
3274	 59.47	0	3509446..3510765	+	439	86358943	-	RHE_CH03345	-	hypothetical protein
3275	 63.25	0	3510611..3511459	-	282	86358944	-	RHE_CH03346	-	putative acetyltransferase protein
3276	 63.92	0	3511787..3513571	-	594	86358945	-	RHE_CH03347	-	dihydroxy-acid dehydratase
3277	 62.57	0	3513862..3517062	-	1066	86358946	mexF1	RHE_CH03348	-	multidrug-efflux system, acriflavin resistance protein
3278	 64.74	0	3517180..3518370	-	396	86358947	mexE1	RHE_CH03349	-	HlyD family multidrug-efflux system secretion protein
3279	 61.64	0	3518417..3519211	-	264	86358948	-	RHE_CH03350	-	putative esterase protein
3280	 59.00	0	3519253..3520308	+	351	86358949	-	RHE_CH03351	-	LysR family transcriptional regulator
3281	 64.38	0	3520554..3521297	-	247	86358950	-	RHE_CH03352	-	short chain dehydrogenase
3282	 63.81	0	3521414..3522322	+	302	86358951	-	RHE_CH03353	-	LysR family transcriptional regulator
3283	 60.32	0	3522346..3522660	+	104	86358952	-	RHE_CH03354	-	hypothetical protein
3284	 63.59	0	3522708..3523325	+	205	86358953	-	RHE_CH03355	-	3-methyladenine DNA glycosylase
3285	 62.71	0	3523326..3524867	-	513	86358954	-	RHE_CH03356	-	multidrug resistance protein
3286	 62.64	0	3524860..3526077	-	405	86358955	-	RHE_CH03357	-	HlyD family protein secretion protein
3287	 60.43	0	3526070..3526534	-	154	86358956	-	RHE_CH03358	-	MarR family transcriptional regulator
3288	 62.78	0	3526765..3528306	+	513	86358957	-	RHE_CH03359	-	Na+/H+ antiporter protein
3289	 63.02	0	3528566..3529744	+	392	86358958	mexE2	RHE_CH03360	-	HlyD family multidrug-efflux system secretion protein
3290	 61.14	0	3529741..3532926	+	1061	86358959	mexF2	RHE_CH03361	-	multidrug-efflux system, acriflavin resistance protein
3291	 61.65	0	3533063..3533800	-	245	86358960	-	RHE_CH03362	-	serine/threonine specific protein phosphatase protein
3292	 64.32	0	3534005..3535153	+	382	86358961	-	RHE_CH03363	-	putative FMNH2-dependent monooxygenase protein
3293	 60.65	0	3535166..3535630	-	154	86358962	-	RHE_CH03364	-	hypothetical protein
3294	 61.85	0	3535807..3536595	-	262	86358963	-	RHE_CH03365	-	short-chain alcohol dehydrogenase protein
3295	 64.20	0	3536736..3537506	+	256	86358964	-	RHE_CH03366	-	putative hydroxypyruvate isomerase protein
3296	 61.22	0	3537503..3537943	-	146	86358965	-	RHE_CH03367	-	hypothetical protein
3297	 62.24	0	3538131..3538604	+	157	86358966	-	RHE_CH03368	-	hypothetical protein
3298	 65.95	+1	3538621..3539730	-	369	86358967	ugpCch2	RHE_CH03369	-	glycerol-3-phosphate transporter ATP-binding subunit
3299	 60.11	0	3539743..3540657	-	304	86358968	ugpEch2	RHE_CH03370	-	sn-glycerol-3-phosphate ABC transporter, permease protein
3300	 58.08	-1	3540668..3541552	-	294	86358969	ugpAch2	RHE_CH03371	-	sn-glycerol-3-phosphate ABC transporter, permease protein
3301	 60.47	0	3541677..3543032	-	451	86358970	ugpBch2	RHE_CH03372	-	sn-glycerol 3-phosphate ABC transporter, substrate-binding protein
3302	 65.75	+1	3543397..3544602	-	401	86358971	-	RHE_CH03373	-	ROK family transcriptional regulator
61.61	MEAN

3.19	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.