IslandPathversion 1.0

IslandPath Analysis: Rhizobium etli CFN 42



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 61.61 STD DEV: 3.19
Rhizobium etli CFN 42, complete genome - 1..4381608
4035 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3157	 58.50	0	3388662..3389273	-	203	86358826	-	RHE_CH03227	-	putative acyl-CoA thioesterase/lipase protein
3158	 58.10	-1	3389570..3390877	-	435	86358827	prsE	RHE_CH03228	-	HlyD family protein secretion protein
3159	 59.17	0	3390893..3392692	-	599	86358828	prsD	RHE_CH03229	-	protease/lipase ABC transporter, ATP-binding and permease protein
3160	 56.42	-1	3393139..3394758	-	539	86358829	plyA3	RHE_CH03230	-	polysaccharidase protein
3161	 55.51	-1	3395448..3396155	+	235	86358830	rapAch	RHE_CH03231	-	autoaggregation protein
3162	 57.12	-1	3396482..3397183	-	233	86358831	-	RHE_CH03232	-	hypothetical protein
3163	 57.80	-1	3397183..3399459	-	758	86358832	pssP	RHE_CH03233	-	exopolysaccharide polymerization protein
3164	 61.34	0	3399511..3400224	-	237	86358833	pssO	RHE_CH03234	-	exopolysaccharide inner membrane protein
3165	 58.50	0	3400310..3401521	-	403	86358834	pssN	RHE_CH03235	-	exopolysaccharide export protein
3166	 57.16	-1	3401823..3403232	-	469	86358835	pssT2	RHE_CH03236	-	endo-1,4-beta-xylanase (exopolysaccharide export) protein
3167	 59.17	0	3403535..3404134	+	199	86358836	-	RHE_CH03237	-	hypothetical protein
3168	 60.32	0	3404415..3405722	+	435	86358837	rkpK	RHE_CH03238	-	UDP-glucose 6-dehydrogenase protein
3169	 58.88	0	3405904..3406686	-	260	86358838	-	RHE_CH03239	-	serine/threonine specific protein phosphatase protein
3170	 61.55	0	3407793..3408398	-	201	86358839	-	RHE_CH03240	-	esterase/lipase/thioesterase protein
3171	 62.06	0	3408409..3409341	-	310	86358840	-	RHE_CH03241	-	dioxygenase protein
3172	 60.16	0	3409477..3410106	-	209	86358841	ung	RHE_CH03242	-	uracil-DNA glycosylase
3173	 62.11	0	3410408..3411832	+	474	86358842	noeK	RHE_CH03243	-	phosphomannomutase protein
3174	 60.44	0	3411835..3413295	+	486	86358843	noeJ	RHE_CH03244	-	mannose-1-phosphate guanylyltransferase (GDP) protein
3175	 58.17	-1	3413430..3413735	+	101	86358844	-	RHE_CH03245	-	hypothetical protein
3176	 56.95	-1	3413779..3414735	-	318	86358845	-	RHE_CH03246	-	putative endonuclease/exonuclease/phosphatase family protein
3177	 59.19	0	3414996..3416012	+	338	86358846	lpsL	RHE_CH03247	-	UDP-glucuronic acid epimerase protein
3178	 59.02	0	3416092..3416601	+	169	86358847	-	RHE_CH03248	-	hypothetical protein
3179	 62.27	0	3417051..3417755	+	234	86358848	-	RHE_CH03249	-	TetR family transcriptional regulator
3180	 67.26	+1	3417752..3418765	+	337	86358849	-	RHE_CH03250	-	hypothetical protein
3181	 64.78	0	3418762..3420507	+	581	86358850	-	RHE_CH03251	-	ABC  transporter ATP-binding protein
3182	 63.92	0	3420504..3421631	+	375	86358851	-	RHE_CH03252	-	ABC transporter permease
3183	 61.99	0	3421633..3422745	+	370	86358852	-	RHE_CH03253	-	ABC transporter permease
3184	 65.15	+1	3422876..3423271	+	131	86358853	-	RHE_CH03254	-	hypothetical protein
3185	 62.55	0	3423421..3424464	-	347	86358854	thuBch	RHE_CH03255	-	myo-inositol 2-dehydrogenase protein
3186	 62.72	0	3424474..3425259	-	261	86358855	thuAch	RHE_CH03256	-	trehalosemaltose utilization protein
3187	 58.77	0	3425453..3425794	-	113	86358856	-	RHE_CH03257	-	methyl viologen/ethidium resistance transmembrane protein
3188	 60.32	0	3425813..3426442	-	209	86358857	-	RHE_CH03258	-	TetR family transcriptional regulator
3189	 63.24	0	3426545..3426952	+	135	86358858	-	RHE_CH03259	-	putative globin-like protein
3190	 67.47	+1	3426949..3427320	+	123	86358859	-	RHE_CH03260	-	hypothetical protein
3191	 58.60	0	3427317..3427688	-	123	86358860	-	RHE_CH03261	-	putative bleomycin resistance protein
3192	 59.68	0	3427685..3427999	-	104	86358861	-	RHE_CH03262	-	hypothetical protein
3193	 63.74	0	3428009..3428281	-	90	86358862	-	RHE_CH03263	-	hypothetical protein
3194	 62.25	0	3428278..3428685	-	135	86358863	-	RHE_CH03264	-	hypothetical protein
3195	 62.44	0	3428794..3430119	-	441	86358864	-	RHE_CH03265	-	putative membrane protein, transduces energy to outer membrane receptors
3196	 62.44	0	3430178..3430603	-	141	86358865	-	RHE_CH03266	-	hypothetical protein
3197	 56.28	-1	3430781..3430963	+	60	86358866	hmuP	RHE_CH03267	-	hemin transport system, hemin uptake protein
3198	 60.57	0	3430983..3432032	+	349	86358867	hmuS	RHE_CH03268	-	hemin transport system, degrading protein
3199	 65.48	+1	3432044..3432973	+	309	86358868	hmuT	RHE_CH03269	-	hemin transport system, hemin-binding protein
3200	 68.19	+2	3432976..3434088	+	370	86358869	hmuU	RHE_CH03270	-	hemin transport system, permease protein
3201	 64.28	0	3434110..3434904	+	264	86358870	hmuV	RHE_CH03271	-	hemin importer ATP-binding subunit
3202	 63.77	0	3435052..3435396	+	114	86358871	-	RHE_CH03272	-	hypothetical protein
3203	 60.22	0	3436014..3436571	-	185	86358872	rpoE4	RHE_CH03273	-	RNA polymerase sigma factor
3204	 56.04	-1	3436581..3436787	-	68	86358873	-	RHE_CH03274	-	hypothetical protein
3205	 56.23	-1	3437035..3437829	+	264	86358874	tcrX	RHE_CH03275	-	two-component response regulator
3206	 58.49	0	3438060..3439013	+	317	86358875	tcrY	RHE_CH03276	-	two-component sensor histidine kinase protein
3207	 63.58	0	3439426..3440787	+	453	86358876	-	RHE_CH03277	-	putative oxidoreductase
3208	 63.09	0	3440803..3442116	+	437	86358877	-	RHE_CH03278	-	dihydropyrimidine dehydrogenase
3209	 56.56	-1	3442276..3444264	+	662	86358878	-	RHE_CH03279	-	putative 1,4-alpha-glucan branching enzyme protein
3210	 53.56	-2	3444334..3444768	-	144	86358879	-	RHE_CH03280	-	hypothetical protein
3211	 57.28	-1	3444833..3445237	-	134	86358880	-	RHE_CH03281	-	putative dehydrogenase protein
3212	 58.39	-1	3445415..3447094	+	559	86358881	malL	RHE_CH03282	-	oligosaccharide alpha-1,6-glucosidase protein
3213	 63.90	0	3447193..3448203	-	336	86358882	ftrA	RHE_CH03283	-	transcriptional activator FtrA
3214	 64.23	0	3448266..3448676	+	136	86358883	-	RHE_CH03284	-	putative rhodanese-related sulfurtransferase protein
3215	 63.54	0	3448716..3449738	-	340	86358884	-	RHE_CH03285	-	alcohol dehydrogenase protein
3216	 60.23	0	3449715..3450740	+	341	86358885	-	RHE_CH03286	-	LysR family transcriptional regulator
3217	 59.26	0	3450839..3451270	+	143	86358886	-	RHE_CH03287	-	hypothetical protein
3218	 62.50	0	3451273..3451680	+	135	86358887	-	RHE_CH03288	-	two-component response regulator protein
3219	 60.06	0	3451545..3452195	-	216	86358888	-	RHE_CH03289	-	TetR family transcriptional regulator
3220	 62.84	0	3452495..3453748	+	417	162329628	amaB	RHE_CH03290	-	allantoate amidohydrolase
3221	 58.54	0	3453748..3454338	+	196	86358890	-	RHE_CH03291	-	hypothetical protein
3222	 62.27	0	3454335..3455789	+	484	86358891	dht	RHE_CH03292	-	dihydropyrimidinase
3223	 64.01	0	3455848..3456261	-	137	86358892	-	RHE_CH03293	-	hypothetical protein
3224	 63.23	0	3456356..3457141	+	261	86358893	-	RHE_CH03294	-	nitrate/sulfonate ABC transporter, ATP-binding protein
3225	 61.29	0	3457376..3458305	+	309	86358894	-	RHE_CH03295	-	nitrate/sulfonate ABC transporter, permease protein
3226	 64.01	0	3458302..3459429	+	375	86358895	-	RHE_CH03296	-	nitrate/sulfonate ABC transporter, permease protein
3227	 60.15	0	3459525..3460460	+	311	86358896	-	RHE_CH03297	-	nitrate/sulfonate ABC transporter, substrate-binding protein
3228	 63.06	0	3460849..3462039	+	396	86358897	-	RHE_CH03298	-	HlyD family protein secretion protein
3229	 61.40	0	3462053..3465373	+	1106	86358898	-	RHE_CH03299	-	acriflavin resistance efflux transporter
3230	 63.24	0	3465472..3466083	-	203	86358899	ureG	RHE_CH03300	-	urease accessory protein
3231	 65.18	+1	3466172..3466843	-	223	86358900	ureF	RHE_CH03301	-	urease accessory protein
3232	 57.35	-1	3466849..3467535	-	228	86358901	ureE	RHE_CH03302	-	urease accessory protein
3233	 61.03	0	3467519..3468370	-	283	86358902	-	RHE_CH03303	-	urease-associated protein
3234	 60.71	0	3468714..3469385	-	223	86358903	-	RHE_CH03304	-	urease-associated protein
3235	 63.40	0	3469418..3471130	-	570	86358904	ureC	RHE_CH03305	-	urease subunit alpha
3236	 63.38	0	3471134..3471772	-	212	86358905	-	RHE_CH03306	-	urease-associated protein
3237	 60.25	0	3471774..3472178	-	134	86358906	-	RHE_CH03307	-	urease-associated protein
3238	 65.36	+1	3472196..3472501	-	101	86358907	ureB	RHE_CH03308	-	urease subunit beta
3239	 62.70	0	3472512..3472763	-	83	86358908	-	RHE_CH03309	-	urease-associated protein
3240	 62.38	0	3472773..3473075	-	100	86358909	ureA	RHE_CH03310	-	urease subunit gamma
3241	 65.48	+1	3473104..3473775	-	223	86358910	ureD	RHE_CH03311	-	urease accessory protein
3242	 62.79	0	3474073..3474768	-	231	86358911	-	RHE_CH03312	-	urea or short-chain amide ABC transporter, ATP-binding protein
3243	 60.31	0	3474788..3475306	-	172	86358912	-	RHE_CH03313	-	hypothetical protein
3244	 59.66	0	3475382..3476137	-	251	86358913	-	RHE_CH03314	-	urea or short-chain amide ABC transporter, ATP-binding protein
3245	 63.14	0	3476143..3477306	-	387	86358914	-	RHE_CH03315	-	urea or short-chain amide ABC transporter, permease protein
3246	 62.03	0	3477303..3478919	-	538	86358915	-	RHE_CH03316	-	urea or short-chain amide ABC transporter, permease protein
3247	 59.47	0	3479029..3480321	-	430	86358916	-	RHE_CH03317	-	urea or short-chain amide ABC transporter, substrate-binding protein
3248	 62.49	0	3480503..3482587	-	694	86358917	-	RHE_CH03318	-	putative phosphatase protein
3249	 63.94	0	3485963..3486880	+	305	86358918	-	RHE_CH03320	-	two-component response regulator protein
3250	 60.96	0	3487057..3488178	-	373	86358919	braC2	RHE_CH03321	-	amino acid ABC transporter, substrate-binding protein
3251	 55.08	-2	3488299..3488652	-	117	86358920	-	RHE_CH03322	-	hypothetical protein
3252	 61.42	0	3488672..3489415	-	247	86358921	braG	RHE_CH03323	-	amino acid ABC transporter, ATP-binding protein
3253	 58.45	0	3489415..3490290	-	291	86358922	braF	RHE_CH03324	-	amino acid ABC transporter, ATP-binding protein
3254	 58.84	0	3490290..3491681	-	463	86358923	braE	RHE_CH03325	-	amino acid ABC transporter, permease protein
3255	 58.14	-1	3491686..3492588	-	300	86358924	braD	RHE_CH03326	-	amino acid ABC transporter, permease protein
3256	 63.03	0	3493124..3493921	+	265	86358925	pssB	RHE_CH03327	-	exopolysaccharide production protein
61.61	MEAN

3.19	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.