IslandPathversion 1.0

IslandPath Analysis: Rhizobium etli CFN 42



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 61.61 STD DEV: 3.19
Rhizobium etli CFN 42, complete genome - 1..4381608
4035 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3051	 61.75	0	3266883..3267350	-	155	86358720	-	RHE_CH03119	-	hypothetical protein
3052	 62.70	0	3267441..3268700	-	419	86358721	-	RHE_CH03120	-	RNA polymerase sigma factor protein (sigma-70)
3053	 61.07	0	3268697..3269071	-	124	86358722	-	RHE_CH03121	-	hypothetical protein
3054	 63.25	0	3269235..3270728	-	497	86358723	glpKch2	RHE_CH03122	-	glycerol kinase protein
3055	 60.75	0	3270886..3271662	+	258	86358724	bdhA	RHE_CH03123	-	D-beta-hydroxybutyrate dehydrogenase protein
3056	 63.80	0	3271691..3273157	+	488	86358725	xdhA	RHE_CH03124	-	xanthine dehydrogenase protein
3057	 63.46	0	3273339..3275678	+	779	86358726	xdhB	RHE_CH03125	-	xanthine dehydrogenase protein
3058	 65.19	+1	3275961..3276773	+	270	86358727	xdhC	RHE_CH03126	-	xanthine dehydrogenase protein
3059	 63.67	0	3277141..3277941	+	266	86358728	-	RHE_CH03127	-	LysR family transcriptional regulator
3060	 57.36	-1	3277996..3278328	-	110	86358729	-	RHE_CH03128	-	hypothetical protein
3061	 59.73	0	3278664..3279902	+	412	86358730	-	RHE_CH03129	-	hypothetical protein
3062	 63.46	0	3279899..3281209	+	436	86358731	guaD	RHE_CH03130	-	guanine deaminase
3063	 63.08	0	3281369..3282511	+	380	86358732	lldD3	RHE_CH03131	-	L-lactate dehydrogenase (cytochrome) protein
3064	 63.27	0	3282560..3283000	-	146	86358733	-	RHE_CH03132	-	hypothetical protein
3065	 62.90	0	3282997..3284325	-	442	86358734	-	RHE_CH03133	-	putative phosphatase protein
3066	 62.86	0	3284336..3286120	-	594	86358735	-	RHE_CH03134	-	putative hydrolase protein
3067	 58.17	-1	3286319..3286930	+	203	86358736	-	RHE_CH03135	-	CDP-alcohol phosphatidyltransferase protein
3068	 63.28	0	3287169..3288200	+	343	86358737	-	RHE_CH03136	-	hypothetical protein
3069	 64.81	+1	3288206..3288853	+	215	86358738	-	RHE_CH03137	-	hypothetical protein
3070	 62.77	0	3288853..3291855	+	1000	86358739	-	RHE_CH03138	-	hypothetical protein
3071	 63.07	0	3291732..3292232	-	166	86358740	allA	RHE_CH03139	-	ureidoglycolate hydrolase
3072	 58.40	-1	3292238..3292600	-	120	86358741	-	RHE_CH03140	-	hypothetical protein
3073	 64.67	0	3292597..3293097	-	166	86358742	-	RHE_CH03141	-	hypothetical protein
3074	 61.36	0	3293097..3294020	-	307	86358743	-	RHE_CH03142	-	putative chitooligosaccharide deacetylase protein
3075	 60.59	0	3294134..3294841	-	235	86358744	-	RHE_CH03143	-	hypothetical protein
3076	 64.31	0	3294956..3296059	-	367	86358745	-	RHE_CH03144	-	D-amino acid oxidase protein
3077	 64.95	+1	3296202..3296900	+	232	86358746	-	RHE_CH03145	-	hypothetical protein
3078	 62.23	0	3296911..3300312	-	1133	86358747	-	RHE_CH03146	-	two-component sensor histidine kinase/response regulator hybrid protein
3079	 62.36	0	3300613..3300960	+	115	86358748	-	RHE_CH03147	-	hypothetical protein
3080	 61.90	0	3301070..3302455	-	461	86358749	-	RHE_CH03148	-	transporter protein
3081	 61.08	0	3302638..3303585	-	315	86358750	dapAch4	RHE_CH03149	-	dihydrodipicolinate synthase protein
3082	 63.36	0	3303747..3304775	+	342	86358751	-	RHE_CH03150	-	LacI family transcription regulator
3083	 62.83	0	3304895..3305911	+	338	86358752	-	RHE_CH03151	-	putative DNA alkylation repair protein
3084	 66.31	+1	3306142..3307824	+	560	86358753	rhlE2	RHE_CH03152	-	ATP-dependent RNA helicase protein
3085	 60.71	0	3308142..3309131	+	329	86358754	-	RHE_CH03153	-	AraC family transcriptional regulator
3086	 62.53	0	3309190..3310398	+	402	86358755	-	RHE_CH03154	-	transporter, permease protein
3087	 62.44	0	3310617..3311516	-	299	86358756	-	RHE_CH03155	-	hypothetical protein
3088	 60.14	0	3312066..3313460	+	464	86358757	-	RHE_CH03156	-	hypothetical protein
3089	 61.06	0	3313493..3314401	+	302	86358758	-	RHE_CH03157	-	hypothetical protein
3090	 63.76	0	3314414..3315238	+	274	86358759	-	RHE_CH03158	-	putative transglutaminase protein
3091	 65.26	+1	3315311..3315736	-	141	86358760	-	RHE_CH03159	-	hypothetical protein
3092	 64.08	0	3316083..3317822	-	579	86358761	ilvDch2	RHE_CH03160	-	dihydroxy-acid dehydratase
3093	 63.46	0	3317884..3319317	-	477	86358762	-	RHE_CH03161	-	aldehyde dehydrogenase
3094	 61.72	0	3319386..3320456	-	356	86358763	gguC	RHE_CH03162	-	GguC protein
3095	 61.55	0	3320498..3321709	-	403	86358764	gguB	RHE_CH03163	-	xylose ABC transporter, permease protein
3096	 58.23	-1	3321706..3323223	-	505	86358765	gguA	RHE_CH03164	-	xylose ABC transporter, ATP-binding protein
3097	 59.72	0	3323341..3324405	-	354	86358766	chvE	RHE_CH03165	-	xylose ABC transporter, substrate-binding protein
3098	 61.81	0	3324677..3325684	+	335	86358767	gbpR	RHE_CH03166	-	LysR family transcriptional regulator
3099	 62.72	0	3325799..3326254	+	151	86358768	-	RHE_CH03167	-	hypothetical protein
3100	 61.00	0	3326550..3327413	+	287	86358769	-	RHE_CH03168	-	hypothetical protein
3101	 61.29	0	3327609..3327887	-	92	86358770	-	RHE_CH03169	-	hypothetical protein
3102	 64.25	0	3328045..3329037	+	330	86358771	idhA	RHE_CH03170	-	myo-inositol 2-dehydrogenase protein
3103	 64.38	0	3329555..3330778	-	407	86358772	-	RHE_CH03171	-	transcriptional regulator protein
3104	 62.44	0	3331104..3332144	+	346	86358773	xylF	RHE_CH03172	-	xylose ABC transporter, substrate-binding protein
3105	 63.66	0	3332255..3333718	+	487	86358774	xylH	RHE_CH03173	-	xylose ABC transporter, permease protein
3106	 63.60	0	3333732..3334514	+	260	86358775	xylG	RHE_CH03174	-	xylose ABC transporter, ATP-binding protein
3107	 59.33	0	3334814..3335113	-	99	86358776	-	RHE_CH03176	-	hypothetical protein
3108	 61.63	0	3335463..3335720	+	85	86358777	-	RHE_CH03177	-	hypothetical protein
3109	 55.56	-1	3336259..3336474	+	71	86358778	-	RHE_CH03178	-	hypothetical protein
3110	 51.42	-2	3336523..3336981	+	152	86358779	-	RHE_CH03179	-	hypothetical protein
3111	 59.83	0	3337307..3338374	+	355	86358780	-	RHE_CH03180	-	potassium channel protein
3112	 53.82	-2	3339564..3341501	+	645	86358781	-	RHE_CH03181	-	cell surface saccharide saccharide acetylase
3113	 60.35	0	3341647..3342549	-	300	86358782	-	RHE_CH03182	-	acetyltransferase protein
3114	 52.49	-2	3342838..3343239	+	133	86358783	-	RHE_CH03183	-	hypothetical protein
3115	 63.52	0	3343700..3345064	+	454	86358784	-	RHE_CH03184	-	hypothetical protein
3116	 52.80	-2	3345459..3345869	-	136	86358785	-	RHE_CH03185	-	hypothetical protein
3117	 62.08	0	3346247..3346573	+	108	86358786	-	RHE_CH03186	-	hypothetical protein
3118	 57.78	-1	3347317..3347586	+	89	86358787	-	RHE_CH03187	-	hypothetical protein
3119	 58.01	-1	3347725..3348267	-	180	86358788	-	RHE_CH03188	-	acetyltransferase protein
3120	 64.16	0	3348640..3349638	-	332	86358789	-	RHE_CH03189	-	sugar ABC transporter, permease protein
3121	 64.32	0	3349673..3350524	-	283	86358790	-	RHE_CH03190	-	sugar ABC transporter, ATP-binding protein
3122	 62.28	0	3350659..3351639	+	326	86358791	-	RHE_CH03191	-	putative UDP-glucose 4-epimerase protein
3123	 62.94	0	3351687..3352679	+	330	86358792	-	RHE_CH03192	-	sugar ABC transporter, substrate-binding protein
3124	 66.11	+1	3352684..3353586	-	300	86358793	ampR	RHE_CH03193	-	LysR family transcriptional regulator
3125	 61.96	0	3353740..3354864	+	374	162329629	ampC	RHE_CH03194	-	beta-lactamase
3126	 58.91	0	3355243..3356196	+	317	86358795	-	RHE_CH03195	-	UDP-glucose 4-epimerase protein
3127	 61.32	0	3356282..3357460	+	392	86358796	-	RHE_CH03196	-	glycosyltransferase
3128	 64.94	+1	3357439..3360453	+	1004	86358797	-	RHE_CH03197	-	putative polysaccharide deacetylase/methyltransferase protein
3129	 60.30	0	3360450..3361532	+	360	86358798	-	RHE_CH03198	-	glycosyltransferase
3130	 58.23	-1	3361426..3363285	+	619	86358799	-	RHE_CH03199	-	putative surface saccharide ABC transporter, ATP-binding and permease protein
3131	 57.93	-1	3363291..3364400	+	369	86358800	-	RHE_CH03200	-	glycosyltransferase
3132	 50.79	-2	3365011..3365262	-	83	86358801	-	RHE_CH03201	-	hypothetical protein
3133	 52.78	-2	3365522..3365881	-	119	86358802	-	RHE_CH03202	-	hypothetical protein
3134	 54.32	-2	3366349..3366672	-	107	86358803	-	RHE_CH03203	-	hypothetical protein
3135	 61.86	0	3366700..3367407	-	235	86358804	-	RHE_CH03204	-	hypothetical protein
3136	 60.95	0	3367404..3368453	-	349	86358805	-	RHE_CH03205	-	hypothetical protein
3137	 61.50	0	3368634..3368846	-	70	86358806	-	RHE_CH03206	-	hypothetical protein
3138	 59.62	0	3368867..3370711	-	614	86358807	-	RHE_CH03207	-	hypothetical protein
3139	 55.40	-1	3370721..3371146	-	141	86358808	-	RHE_CH03208	-	transcriptional regulator protein
3140	 54.85	-2	3371230..3371940	-	236	86358809	-	RHE_CH03209	-	putative methyltransferase protein
3141	 58.51	0	3372369..3373349	+	326	86358810	pssV	RHE_CH03210	-	exopolysaccharide production protein
3142	 56.98	-1	3373935..3375008	+	357	86358811	pssT1	RHE_CH03212	-	endo-1,4-beta-xylanase protein
3143	 58.07	-1	3375041..3376192	+	383	86358812	pssS	RHE_CH03213	-	glycosyltransferase protein
3144	 59.41	0	3376189..3376698	+	169	86358813	pssR	RHE_CH03214	-	acetyltransferase protein
3145	 58.14	-1	3376695..3377597	+	300	86358814	pssM	RHE_CH03215	-	ketal pyruvate transferase protein
3146	 59.21	0	3377698..3379200	+	500	86358815	pssL	RHE_CH03216	-	exopolysaccharide polymerization and/or export protein
3147	 58.82	0	3379231..3380262	+	343	86358816	pssK	RHE_CH03217	-	exopolysaccharide polymerization protein
3148	 58.88	0	3380274..3381095	+	273	86358817	pssJ	RHE_CH03218	-	galactosyltransferase protein
3149	 56.08	-1	3381173..3382117	+	314	86358818	pssI	RHE_CH03219	-	glycosyltransferase protein
3150	 53.83	-2	3382289..3383254	+	321	86358819	pssH	RHE_CH03220	-	glycosyltransferase protein
61.61	MEAN

3.19	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.