IslandPathversion 1.0

IslandPath Analysis: Rhizobium etli CFN 42



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 61.61 STD DEV: 3.19
Rhizobium etli CFN 42, complete genome - 1..4381608
4035 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2994	 59.37	0	3202318..3203304	+	328	86358663	-	RHE_CH03061	-	putative glutathione S-transferase protein
2995	 62.50	0	3203311..3203862	-	183	86358664	-	RHE_CH03062	-	MutT/NUDIX family hydrolase
2996	 63.68	0	3203831..3204769	+	312	86358665	-	RHE_CH03063	-	putative phosphatase protein
2997	 58.11	-1	3204928..3205488	+	186	86358666	-	RHE_CH03064	-	hypothetical protein
2998	 63.53	0	3205673..3206182	+	169	86358667	rpoE3	RHE_CH03065	-	RNA polymerase sigma factor protein (sigma-24)
2999	 64.72	0	3206151..3207023	+	290	86358668	-	RHE_CH03066	-	hypothetical protein
3000	 59.89	0	3207366..3209048	-	560	162329632	leuA2	RHE_CH03067	-	2-isopropylmalate synthase
3001	 64.80	0	3209422..3210651	-	409	86358670	-	RHE_CH03068	-	benzoate transporter protein
3002	 59.32	0	3210802..3211386	-	194	86358671	clpP3	RHE_CH03069	-	ATP-dependent Clp protease proteolytic subunit
3003	 62.60	0	3211618..3212379	+	253	86358672	-	RHE_CH03070	-	hypothetical protein
3004	 58.49	0	3212512..3212976	-	154	86358673	-	RHE_CH03071	-	7-cyano-7-deazaguanine reductase
3005	 61.86	0	3212976..3213890	-	304	86358674	-	RHE_CH03072	-	cation efflux protein
3006	 66.07	+1	3214087..3214758	-	223	86358675	-	RHE_CH03073	-	hypothetical protein
3007	 57.92	-1	3214773..3215012	-	79	86358676	-	RHE_CH03074	-	hypothetical protein
3008	 62.88	0	3215235..3217424	-	729	86358677	trpE	RHE_CH03075	-	anthranilate synthase
3009	 60.65	0	3217693..3219951	-	752	86358678	-	RHE_CH03076	-	outer membrane iron receptor protein
3010	 62.38	0	3221471..3223150	-	559	86358679	fhs	RHE_CH03078	-	formate--tetrahydrofolate ligase
3011	 58.86	0	3223739..3225262	-	507	86358680	-	RHE_CH03079	-	hypothetical protein
3012	 58.95	0	3225725..3226450	+	241	86358681	-	RHE_CH03080	-	LuxR family transcriptional regulator
3013	 59.62	0	3226588..3226956	+	122	86358682	-	RHE_CH03081	-	hypothetical protein
3014	 60.48	0	3226977..3228107	-	376	86358683	-	RHE_CH03082	-	hypothetical protein
3015	 61.64	0	3228246..3229319	-	357	86358684	-	RHE_CH03083	-	hypothetical protein
3016	 62.52	0	3229392..3229994	-	200	86358685	tdk	RHE_CH03084	-	thymidine kinase
3017	 61.34	0	3230231..3231187	+	318	86358686	proX	RHE_CH03085	-	proline/glycine betaine ABC transporter, substrate-binding protein
3018	 62.29	0	3231262..3232107	+	281	86358687	proW	RHE_CH03086	-	proline/glycine betaine ABC transporter, permease protein
3019	 65.34	+1	3232104..3233156	+	350	86358688	proV	RHE_CH03087	-	proline/glycine betaine ABC transporter, ATP-binding protein
3020	 59.47	0	3233188..3233937	+	249	86358689	-	RHE_CH03088	-	hypothetical protein
3021	 56.60	-1	3234046..3234363	+	105	86358690	nolRch	RHE_CH03089	-	ArsR family transcriptional regulator
3022	 61.61	0	3234635..3235960	+	441	86358691	-	RHE_CH03090	-	beta amino acid--pyruvate transaminase
3023	 58.22	-1	3236039..3236914	-	291	86358692	-	RHE_CH03091	-	putative phosphohydrolase protein
3024	 45.96	-2	3236977..3237261	-	94	86358693	-	RHE_CH03092	-	hypothetical protein
3025	 62.41	0	3237413..3238516	+	367	86358694	braC1	RHE_CH03093	-	amino acid ABC transporter, substrate-binding protein
3026	 62.60	0	3239026..3240723	+	565	86358695	adeC1	RHE_CH03094	-	adenine deaminase protein
3027	 62.14	0	3240745..3242466	-	573	86358696	-	RHE_CH03095	-	alpha-glucosidase protein
3028	 59.01	0	3242751..3244331	+	526	86358697	oppA	RHE_CH03096	-	oligopeptide ABC transporter, substrate-binding protein
3029	 60.71	0	3244380..3245303	+	307	86358698	oppB	RHE_CH03097	-	oligopeptide ABC transporter, permease protein
3030	 63.40	0	3245300..3246217	+	305	86358699	oppC	RHE_CH03098	-	oligopeptide ABC transporter, permease protein
3031	 64.07	0	3246219..3247220	+	333	86358700	oppD	RHE_CH03099	-	oligopeptide ABC transporter, ATP-binding protein
3032	 62.82	0	3247213..3248199	+	328	86358701	oppF	RHE_CH03100	-	oligopeptide ABC transporter, ATP-binding protein
3033	 56.73	-1	3248378..3248719	+	113	86358702	-	RHE_CH03101	-	hypothetical protein
3034	 62.95	0	3248940..3249827	+	295	86358703	kdgK	RHE_CH03102	-	2-dehydro-3-deoxygluconokinase protein
3035	 64.06	0	3249907..3250098	-	63	86358704	gstI	RHE_CH03103	-	glutamine synthetase translation inhibitor protein
3036	 60.04	0	3250529..3251569	+	346	86358705	glnII	RHE_CH03104	-	glutamine synthetase II protein
3037	 61.42	0	3251805..3252986	+	393	86358706	-	RHE_CH03105	-	glycosyltransferase
3038	 61.93	0	3252993..3254006	-	337	86358707	-	RHE_CH03106	-	putative lipase protein
3039	 61.54	0	3254143..3254610	+	155	86358708	-	RHE_CH03107	-	MarR family transcriptional regulator
3040	 63.78	0	3254866..3256287	-	473	86358709	engA	RHE_CH03108	-	GTP-binding protein EngA
3041	 61.99	0	3256304..3256987	-	227	86358710	-	RHE_CH03109	-	hypothetical protein
3042	 61.54	0	3257088..3257672	-	194	86358711	-	RHE_CH03110	-	putative nitrate reductase protein
3043	 61.82	0	3257792..3258781	+	329	86358712	-	RHE_CH03111	-	hypothetical protein
3044	 52.69	-2	3258994..3260259	-	421	162329631	bacA	RHE_CH03112	-	transport protein
3045	 68.45	+2	3260385..3261503	-	372	86358714	-	RHE_CH03113	-	putative transporter protein
3046	 62.15	0	3261738..3262313	+	191	86358715	-	RHE_CH03114	-	PadR family transcriptional regulator
3047	 62.46	0	3262500..3264020	-	506	86358716	-	RHE_CH03115	-	oxidoreductase protein
3048	 63.64	0	3264320..3265078	-	252	162329630	map2	RHE_CH03116	-	methionine aminopeptidase
3049	 64.50	0	3265117..3266178	-	353	86358718	-	RHE_CH03117	-	oxidoreductase protein
3050	 55.56	-1	3266197..3266565	-	122	86358719	-	RHE_CH03118	-	hypothetical protein
3051	 61.75	0	3266883..3267350	-	155	86358720	-	RHE_CH03119	-	hypothetical protein
3052	 62.70	0	3267441..3268700	-	419	86358721	-	RHE_CH03120	-	RNA polymerase sigma factor protein (sigma-70)
3053	 61.07	0	3268697..3269071	-	124	86358722	-	RHE_CH03121	-	hypothetical protein
3054	 63.25	0	3269235..3270728	-	497	86358723	glpKch2	RHE_CH03122	-	glycerol kinase protein
3055	 60.75	0	3270886..3271662	+	258	86358724	bdhA	RHE_CH03123	-	D-beta-hydroxybutyrate dehydrogenase protein
3056	 63.80	0	3271691..3273157	+	488	86358725	xdhA	RHE_CH03124	-	xanthine dehydrogenase protein
3057	 63.46	0	3273339..3275678	+	779	86358726	xdhB	RHE_CH03125	-	xanthine dehydrogenase protein
3058	 65.19	+1	3275961..3276773	+	270	86358727	xdhC	RHE_CH03126	-	xanthine dehydrogenase protein
3059	 63.67	0	3277141..3277941	+	266	86358728	-	RHE_CH03127	-	LysR family transcriptional regulator
3060	 57.36	-1	3277996..3278328	-	110	86358729	-	RHE_CH03128	-	hypothetical protein
3061	 59.73	0	3278664..3279902	+	412	86358730	-	RHE_CH03129	-	hypothetical protein
3062	 63.46	0	3279899..3281209	+	436	86358731	guaD	RHE_CH03130	-	guanine deaminase
3063	 63.08	0	3281369..3282511	+	380	86358732	lldD3	RHE_CH03131	-	L-lactate dehydrogenase (cytochrome) protein
3064	 63.27	0	3282560..3283000	-	146	86358733	-	RHE_CH03132	-	hypothetical protein
3065	 62.90	0	3282997..3284325	-	442	86358734	-	RHE_CH03133	-	putative phosphatase protein
3066	 62.86	0	3284336..3286120	-	594	86358735	-	RHE_CH03134	-	putative hydrolase protein
3067	 58.17	-1	3286319..3286930	+	203	86358736	-	RHE_CH03135	-	CDP-alcohol phosphatidyltransferase protein
3068	 63.28	0	3287169..3288200	+	343	86358737	-	RHE_CH03136	-	hypothetical protein
3069	 64.81	+1	3288206..3288853	+	215	86358738	-	RHE_CH03137	-	hypothetical protein
3070	 62.77	0	3288853..3291855	+	1000	86358739	-	RHE_CH03138	-	hypothetical protein
3071	 63.07	0	3291732..3292232	-	166	86358740	allA	RHE_CH03139	-	ureidoglycolate hydrolase
3072	 58.40	-1	3292238..3292600	-	120	86358741	-	RHE_CH03140	-	hypothetical protein
3073	 64.67	0	3292597..3293097	-	166	86358742	-	RHE_CH03141	-	hypothetical protein
3074	 61.36	0	3293097..3294020	-	307	86358743	-	RHE_CH03142	-	putative chitooligosaccharide deacetylase protein
3075	 60.59	0	3294134..3294841	-	235	86358744	-	RHE_CH03143	-	hypothetical protein
3076	 64.31	0	3294956..3296059	-	367	86358745	-	RHE_CH03144	-	D-amino acid oxidase protein
3077	 64.95	+1	3296202..3296900	+	232	86358746	-	RHE_CH03145	-	hypothetical protein
3078	 62.23	0	3296911..3300312	-	1133	86358747	-	RHE_CH03146	-	two-component sensor histidine kinase/response regulator hybrid protein
3079	 62.36	0	3300613..3300960	+	115	86358748	-	RHE_CH03147	-	hypothetical protein
3080	 61.90	0	3301070..3302455	-	461	86358749	-	RHE_CH03148	-	transporter protein
3081	 61.08	0	3302638..3303585	-	315	86358750	dapAch4	RHE_CH03149	-	dihydrodipicolinate synthase protein
3082	 63.36	0	3303747..3304775	+	342	86358751	-	RHE_CH03150	-	LacI family transcription regulator
3083	 62.83	0	3304895..3305911	+	338	86358752	-	RHE_CH03151	-	putative DNA alkylation repair protein
3084	 66.31	+1	3306142..3307824	+	560	86358753	rhlE2	RHE_CH03152	-	ATP-dependent RNA helicase protein
3085	 60.71	0	3308142..3309131	+	329	86358754	-	RHE_CH03153	-	AraC family transcriptional regulator
3086	 62.53	0	3309190..3310398	+	402	86358755	-	RHE_CH03154	-	transporter, permease protein
3087	 62.44	0	3310617..3311516	-	299	86358756	-	RHE_CH03155	-	hypothetical protein
3088	 60.14	0	3312066..3313460	+	464	86358757	-	RHE_CH03156	-	hypothetical protein
3089	 61.06	0	3313493..3314401	+	302	86358758	-	RHE_CH03157	-	hypothetical protein
3090	 63.76	0	3314414..3315238	+	274	86358759	-	RHE_CH03158	-	putative transglutaminase protein
3091	 65.26	+1	3315311..3315736	-	141	86358760	-	RHE_CH03159	-	hypothetical protein
3092	 64.08	0	3316083..3317822	-	579	86358761	ilvDch2	RHE_CH03160	-	dihydroxy-acid dehydratase
3093	 63.46	0	3317884..3319317	-	477	86358762	-	RHE_CH03161	-	aldehyde dehydrogenase
61.61	MEAN

3.19	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.