IslandPathversion 1.0

IslandPath Analysis: Rhizobium etli CFN 42



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 61.61 STD DEV: 3.19
Rhizobium etli CFN 42, complete genome - 1..4381608
4035 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2935	 64.22	0	3144966..3146108	+	380	86358604	-	RHE_CH03002	-	putative glucose dehydrogenase B protein
2936	 60.08	0	3146113..3146583	-	156	86358605	-	RHE_CH03003	-	hypothetical protein
2937	 62.25	0	3146713..3147573	+	286	86358606	-	RHE_CH03004	-	putative transporter, permease protein
2938	 58.33	-1	3148058..3148273	+	71	86358607	cspA5	RHE_CH03005	-	cold shock protein
2939	 63.36	0	3148422..3148874	+	150	86358608	-	RHE_CH03006	-	hypothetical protein
2940	 63.23	0	3148936..3149808	-	290	86358609	-	RHE_CH03007	-	short-chain dehydrogenase protein
2941	 58.49	0	3149826..3150302	+	158	86358610	-	RHE_CH03008	-	putative transcriptional regulator protein
2942	 60.78	0	3150299..3151675	-	458	86358611	-	RHE_CH03009	-	two-component sensor histidine kinase protein
2943	 61.25	0	3151750..3152451	-	233	86358612	-	RHE_CH03010	-	two-component response regulator protein
2944	 58.45	0	3152452..3152889	-	145	86358613	-	RHE_CH03011	-	MarR family transcriptional regulator
2945	 63.27	0	3153708..3154325	-	205	86358614	-	RHE_CH03012	-	hypothetical protein
2946	 62.19	0	3154613..3155305	+	230	86358615	-	RHE_CH03013	-	putative hydrolase protein
2947	 60.82	0	3155314..3155655	-	113	86358616	csaA	RHE_CH03014	-	methionine--tRNA ligase protein
2948	 66.18	+1	3155667..3156494	-	275	86358617	proC	RHE_CH03015	-	pyrroline-5-carboxylate reductase
2949	 58.68	0	3156496..3156996	-	166	86358618	-	RHE_CH03016	-	hypothetical protein
2950	 62.84	0	3157385..3157645	-	86	86358619	-	RHE_CH03017	-	hypothetical protein
2951	 63.37	0	3157882..3158700	+	272	86358620	lgt	RHE_CH03018	-	prolipoprotein diacylglyceryl transferase
2952	 65.85	+1	3158719..3159819	+	366	86358621	-	RHE_CH03019	-	hypothetical protein
2953	 62.77	0	3159879..3160724	+	281	86358622	-	RHE_CH03020	-	hypothetical protein
2954	 62.24	0	3160730..3161881	+	383	86358623	-	RHE_CH03021	-	Xaa-Pro dipeptidase protein
2955	 68.25	+2	3161984..3162805	+	273	86358624	-	RHE_CH03022	-	hypothetical protein
2956	 60.99	0	3162911..3163843	+	310	86358625	prsAch	RHE_CH03023	-	ribose-phosphate pyrophosphokinase
2957	 58.87	0	3164056..3165594	-	512	86358626	-	RHE_CH03024	-	hypothetical protein
2958	 59.35	0	3165985..3166599	+	204	162329634	rplY	RHE_CH03025	-	50S ribosomal protein L25/general stress protein Ctc
2959	 60.88	0	3166791..3169142	+	783	86358628	-	RHE_CH03026	-	putative sensory box/GGDEF family protein
2960	 58.54	0	3169167..3169880	+	237	86358629	-	RHE_CH03027	-	putative amino acid ABC transporter, substrate-binding protein
2961	 60.86	0	3169971..3170693	+	240	86358630	pth	RHE_CH03028	-	peptidyl-tRNA hydrolase
2962	 62.33	0	3170812..3171111	+	99	86358631	-	RHE_CH03029	-	acetyltransferase protein
2963	 56.41	-1	3171121..3171432	-	103	86358632	clpS	RHE_CH03030	-	ATP-dependent Clp protease adaptor
2964	 62.77	0	3171755..3172858	+	367	162329633	-	RHE_CH03031	-	translation-associated GTPase
2965	 64.06	0	3172874..3173947	-	357	86358634	-	RHE_CH03032	-	hypothetical protein
2966	 63.12	0	3174125..3174631	+	168	86358635	-	RHE_CH03033	-	enoyl-CoA hydratase protein
2967	 62.61	0	3174628..3175095	+	155	86358636	-	RHE_CH03034	-	putative enoyl-CoA hydratase protein
2968	 63.07	0	3175114..3175725	-	203	86358637	aptch	RHE_CH03035	-	adenine phosphoribosyltransferase
2969	 60.23	0	3175771..3176655	-	294	86358638	fbcC	RHE_CH03036	-	ubiquinol--cytochrome c reductase, cytochrome c1 subunit protein
2970	 59.72	0	3176681..3177961	-	426	86358639	fbcB	RHE_CH03037	-	ubiquinol-cytochrome-c reductase, cytochrome b subunit protein
2971	 60.28	0	3177976..3178554	-	192	86358640	fbcF	RHE_CH03038	-	ubiquinol-cytochrome-c reductase, iron-sulfur subunit protein
2972	 56.38	-1	3178841..3179773	+	310	86358641	-	RHE_CH03039	-	putative endonuclease/exonuclease/phosphatase family protein
2973	 62.07	0	3179729..3181642	-	637	86358642	-	RHE_CH03040	-	ABC transporter ATP-binding protein
2974	 61.04	0	3181805..3182035	+	76	86358643	-	RHE_CH03041	-	hypothetical protein
2975	 60.96	0	3182127..3183983	-	618	86358644	-	RHE_CH03042	-	ABC transporter ATP-binding protein
2976	 66.02	+1	3184368..3184829	+	153	86358645	-	RHE_CH03043	-	tRNA/rRNA methyltransferase protein
2977	 63.02	0	3185027..3186673	+	548	86358646	-	RHE_CH03044	-	sodium-dependent phosphate transporter protein
2978	 59.00	0	3186677..3186937	-	86	86358647	-	RHE_CH03045	-	hypothetical protein
2979	 62.61	0	3187458..3188369	+	303	86358648	hemF	RHE_CH03046	-	coproporphyrinogen III oxidase
2980	 59.85	0	3188472..3188735	+	87	86358649	-	RHE_CH03047	-	hypothetical protein
2981	 60.75	0	3188849..3189034	+	61	86358650	-	RHE_CH03048	-	hypothetical protein
2982	 65.52	+1	3189105..3190238	-	377	86358651	papS	RHE_CH03049	-	poly(A) polymerase protein
2983	 62.06	0	3190355..3191005	-	216	86358652	-	RHE_CH03050	-	MutT/NUDIX family NTP pyrophosphohydrolase
2984	 61.86	0	3191002..3191625	-	207	86358653	-	RHE_CH03051	-	hypothetical protein
2985	 64.88	+1	3191789..3192793	+	334	86358654	-	RHE_CH03052	-	putative methanol dehydrogenase regulator MoxR-like protein
2986	 66.67	+1	3192885..3193727	+	280	86358655	-	RHE_CH03053	-	hypothetical protein
2987	 65.39	+1	3193724..3196537	+	937	86358656	-	RHE_CH03054	-	hypothetical protein
2988	 63.24	0	3196539..3198611	+	690	86358657	-	RHE_CH03055	-	hypothetical protein
2989	 61.14	0	3198809..3200401	-	530	86358658	-	RHE_CH03056	-	insertion sequence transposase protein
2990	 61.16	0	3200475..3200819	-	114	86358659	-	RHE_CH03057	-	insertion sequence transposase protein
2991	 59.90	0	3200816..3201199	-	127	86358660	-	RHE_CH03058	-	insertion sequence transposase protein
2992	 61.59	0	3201262..3201537	+	91	86358661	-	RHE_CH03059	-	putative acetyltransferase protein
2993	 64.47	0	3201538..3202038	-	166	86358662	-	RHE_CH03060	-	acetyltransferase protein
2994	 59.37	0	3202318..3203304	+	328	86358663	-	RHE_CH03061	-	putative glutathione S-transferase protein
2995	 62.50	0	3203311..3203862	-	183	86358664	-	RHE_CH03062	-	MutT/NUDIX family hydrolase
2996	 63.68	0	3203831..3204769	+	312	86358665	-	RHE_CH03063	-	putative phosphatase protein
2997	 58.11	-1	3204928..3205488	+	186	86358666	-	RHE_CH03064	-	hypothetical protein
2998	 63.53	0	3205673..3206182	+	169	86358667	rpoE3	RHE_CH03065	-	RNA polymerase sigma factor protein (sigma-24)
2999	 64.72	0	3206151..3207023	+	290	86358668	-	RHE_CH03066	-	hypothetical protein
3000	 59.89	0	3207366..3209048	-	560	162329632	leuA2	RHE_CH03067	-	2-isopropylmalate synthase
3001	 64.80	0	3209422..3210651	-	409	86358670	-	RHE_CH03068	-	benzoate transporter protein
3002	 59.32	0	3210802..3211386	-	194	86358671	clpP3	RHE_CH03069	-	ATP-dependent Clp protease proteolytic subunit
3003	 62.60	0	3211618..3212379	+	253	86358672	-	RHE_CH03070	-	hypothetical protein
3004	 58.49	0	3212512..3212976	-	154	86358673	-	RHE_CH03071	-	7-cyano-7-deazaguanine reductase
3005	 61.86	0	3212976..3213890	-	304	86358674	-	RHE_CH03072	-	cation efflux protein
3006	 66.07	+1	3214087..3214758	-	223	86358675	-	RHE_CH03073	-	hypothetical protein
3007	 57.92	-1	3214773..3215012	-	79	86358676	-	RHE_CH03074	-	hypothetical protein
3008	 62.88	0	3215235..3217424	-	729	86358677	trpE	RHE_CH03075	-	anthranilate synthase
3009	 60.65	0	3217693..3219951	-	752	86358678	-	RHE_CH03076	-	outer membrane iron receptor protein
3010	 62.38	0	3221471..3223150	-	559	86358679	fhs	RHE_CH03078	-	formate--tetrahydrofolate ligase
3011	 58.86	0	3223739..3225262	-	507	86358680	-	RHE_CH03079	-	hypothetical protein
3012	 58.95	0	3225725..3226450	+	241	86358681	-	RHE_CH03080	-	LuxR family transcriptional regulator
3013	 59.62	0	3226588..3226956	+	122	86358682	-	RHE_CH03081	-	hypothetical protein
3014	 60.48	0	3226977..3228107	-	376	86358683	-	RHE_CH03082	-	hypothetical protein
3015	 61.64	0	3228246..3229319	-	357	86358684	-	RHE_CH03083	-	hypothetical protein
3016	 62.52	0	3229392..3229994	-	200	86358685	tdk	RHE_CH03084	-	thymidine kinase
3017	 61.34	0	3230231..3231187	+	318	86358686	proX	RHE_CH03085	-	proline/glycine betaine ABC transporter, substrate-binding protein
3018	 62.29	0	3231262..3232107	+	281	86358687	proW	RHE_CH03086	-	proline/glycine betaine ABC transporter, permease protein
3019	 65.34	+1	3232104..3233156	+	350	86358688	proV	RHE_CH03087	-	proline/glycine betaine ABC transporter, ATP-binding protein
3020	 59.47	0	3233188..3233937	+	249	86358689	-	RHE_CH03088	-	hypothetical protein
3021	 56.60	-1	3234046..3234363	+	105	86358690	nolRch	RHE_CH03089	-	ArsR family transcriptional regulator
3022	 61.61	0	3234635..3235960	+	441	86358691	-	RHE_CH03090	-	beta amino acid--pyruvate transaminase
3023	 58.22	-1	3236039..3236914	-	291	86358692	-	RHE_CH03091	-	putative phosphohydrolase protein
3024	 45.96	-2	3236977..3237261	-	94	86358693	-	RHE_CH03092	-	hypothetical protein
3025	 62.41	0	3237413..3238516	+	367	86358694	braC1	RHE_CH03093	-	amino acid ABC transporter, substrate-binding protein
3026	 62.60	0	3239026..3240723	+	565	86358695	adeC1	RHE_CH03094	-	adenine deaminase protein
3027	 62.14	0	3240745..3242466	-	573	86358696	-	RHE_CH03095	-	alpha-glucosidase protein
3028	 59.01	0	3242751..3244331	+	526	86358697	oppA	RHE_CH03096	-	oligopeptide ABC transporter, substrate-binding protein
3029	 60.71	0	3244380..3245303	+	307	86358698	oppB	RHE_CH03097	-	oligopeptide ABC transporter, permease protein
3030	 63.40	0	3245300..3246217	+	305	86358699	oppC	RHE_CH03098	-	oligopeptide ABC transporter, permease protein
3031	 64.07	0	3246219..3247220	+	333	86358700	oppD	RHE_CH03099	-	oligopeptide ABC transporter, ATP-binding protein
3032	 62.82	0	3247213..3248199	+	328	86358701	oppF	RHE_CH03100	-	oligopeptide ABC transporter, ATP-binding protein
3033	 56.73	-1	3248378..3248719	+	113	86358702	-	RHE_CH03101	-	hypothetical protein
3034	 62.95	0	3248940..3249827	+	295	86358703	kdgK	RHE_CH03102	-	2-dehydro-3-deoxygluconokinase protein
61.61	MEAN

3.19	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.