IslandPathversion 1.0

IslandPath Analysis: Rhizobium etli CFN 42



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 61.61 STD DEV: 3.19
Rhizobium etli CFN 42, complete genome - 1..4381608
4035 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2840	 61.44	0	3041249..3042070	-	273	86358509	-	RHE_CH02906	-	spermidine/putrescine ABC transporter permease
2841	 59.23	0	3042072..3042986	-	304	86358510	-	RHE_CH02907	-	spermidine/putrescine ABC transporter permease
2842	 61.28	0	3043250..3044548	-	432	86358511	-	RHE_CH02908	-	spermidine/putrescine ABC transporter substrate-binding protein
2843	 63.64	0	3044594..3045682	-	362	86358512	-	RHE_CH02909	-	spermidine/putrescine ABC transporter ATP-binding protein
2844	 62.73	0	3045950..3046660	+	236	86358513	-	RHE_CH02910	-	GntR family transcriptional regulator
2845	 61.17	0	3046666..3047193	+	175	86358514	-	RHE_CH02911	-	hypothetical protein
2846	 61.46	0	3047321..3047704	-	127	86358515	-	RHE_CH02912	-	hypothetical protein
2847	 68.75	+2	3048283..3048522	+	79	86358516	-	RHE_CH02913	-	hypothetical protein
2848	 57.41	-1	3049012..3049335	+	107	86358517	-	RHE_CH02914	-	hypothetical protein
2849	 59.13	0	3049275..3050057	+	260	86358518	cinRch	RHE_CH02915	-	autoinducer transcriptional regulator protein
2850	 61.56	0	3050272..3050937	+	221	86358519	cinI	RHE_CH02916	-	N-acyl-L-homoserine lactone (AHL) synthase protein
2851	 58.80	0	3051257..3051790	-	177	86358520	-	RHE_CH02917	-	two-component response regulator protein
2852	 54.65	-2	3051864..3053078	-	404	86358521	-	RHE_CH02919	-	integrase/recombinase protein
2853	 54.65	-2	3053075..3053332	-	85	86358522	-	RHE_CH02920	-	hypothetical protein
2854	 54.79	-2	3053334..3053552	-	72	86358523	-	RHE_CH02921	-	hypothetical protein
2855	 54.14	-2	3053775..3054269	+	164	86358524	-	RHE_CH02922	-	hypothetical protein
2856	 54.05	-2	3054572..3055435	-	287	86358525	-	RHE_CH02923	-	hypothetical protein
2857	 51.52	-2	3055532..3056515	-	327	86358526	-	RHE_CH02924	-	hypothetical protein
2858	 46.26	-2	3056914..3058050	-	378	86358527	-	RHE_CH02925	-	hypothetical protein
2859	 52.16	-2	3058230..3058622	-	130	86358528	-	RHE_CH02926	-	hypothetical protein
2860	 60.67	0	3058900..3060984	-	694	86358529	-	RHE_CH02927	-	Clp protease protein
2861	 60.50	0	3060938..3061294	-	118	86358530	-	RHE_CH02928	-	hypothetical protein
2862	 62.71	0	3061354..3061656	-	100	86358531	-	RHE_CH02929	-	hypothetical protein
2863	 58.79	0	3061807..3062631	-	274	86358532	-	RHE_CH02930	-	hypothetical protein
2864	 52.13	-2	3063061..3063342	+	93	86358533	-	RHE_CH02931	-	hypothetical protein
2865	 55.78	-1	3063580..3063882	+	100	86358534	-	RHE_CH02932	-	hypothetical protein
2866	 58.37	-1	3065016..3065642	-	208	86358535	ropB2	RHE_CH02933	-	outer membrane protein
2867	 51.21	-2	3066137..3066343	-	68	86358536	-	RHE_CH02934	-	hypothetical protein
2868	 62.89	0	3066687..3067427	+	246	86358537	-	RHE_CH02935	-	hypothetical protein
2869	 65.42	+1	3067509..3068309	+	266	86358538	-	RHE_CH02936	-	hypothetical protein
2870	 66.34	+1	3068203..3068508	-	101	86358539	-	RHE_CH02937	-	hypothetical protein
2871	 65.18	+1	3068865..3069335	-	156	86358540	-	RHE_CH02938	-	hypothetical protein
2872	 61.46	0	3069387..3070001	-	204	86358541	-	RHE_CH02939	-	hypothetical protein
2873	 60.83	0	3070065..3070784	-	239	86358542	-	RHE_CH02940	-	Crp/Fnr family transcriptional regulator
2874	 59.76	0	3070917..3071162	+	81	86358543	-	RHE_CH02941	-	hypothetical protein
2875	 58.97	0	3071329..3071757	+	142	86358544	-	RHE_CH02942	-	hypothetical protein
2876	 60.90	0	3071697..3072095	-	132	86358545	-	RHE_CH02943	-	hypothetical protein
2877	 65.67	+1	3072176..3072874	-	232	86358546	-	RHE_CH02944	-	hypothetical protein
2878	 64.76	0	3072877..3073767	-	296	86358547	-	RHE_CH02945	-	putative permease protein
2879	 65.66	+1	3073946..3074740	-	264	86358548	-	RHE_CH02946	-	AraC family transcriptional regulator
2880	 65.27	+1	3074801..3075586	-	261	86358549	-	RHE_CH02947	-	putative aminoglycoside 3`-phosphotransferase protein
2881	 55.88	-1	3075845..3076966	-	373	86358550	-	RHE_CH02948	-	hypothetical protein
2882	 58.50	0	3077078..3077371	-	97	86358551	-	RHE_CH02949	-	hypothetical protein
2883	 62.34	0	3077615..3079672	-	685	86358552	sigA	RHE_CH02950	-	RNA polymerase sigma factor RpoD
2884	 60.02	0	3080173..3081210	-	345	86358553	tdh	RHE_CH02951	-	L-threonine 3-dehydrogenase
2885	 61.45	0	3081429..3082616	-	395	86358554	kbl	RHE_CH02952	-	2-amino-3-ketobutyrate coenzyme A ligase
2886	 63.24	0	3082707..3084575	-	622	86358555	recQ	RHE_CH02953	-	ATP-dependent DNA helicase protein
2887	 63.81	0	3084575..3086572	-	665	86358556	dnaG	RHE_CH02954	-	DNA primase
2888	 60.49	0	3087238..3088128	+	296	86358557	-	RHE_CH02955	-	hypothetical protein
2889	 59.65	0	3088132..3088587	-	151	86358558	-	RHE_CH02956	-	hypothetical protein
2890	 62.77	0	3088856..3090061	+	401	86358559	carA	RHE_CH02957	-	carbamoyl phosphate synthase small subunit
2891	 60.63	0	3090237..3091346	-	369	86358560	-	RHE_CH02958	-	putative sulfite oxidase protein
2892	 60.83	0	3091716..3094184	-	822	86358561	-	RHE_CH02959	-	adenylate cyclase protein
2893	 60.66	0	3094268..3095365	-	365	86358562	-	RHE_CH02960	-	amino acid ABC transporter substrate-binding protein
2894	 59.81	0	3095828..3096148	+	106	86358563	-	RHE_CH02961	-	hypothetical protein
2895	 62.46	0	3096164..3097567	-	467	86358564	-	RHE_CH02962	-	multidrug efflux protein
2896	 63.78	0	3097713..3098957	-	414	86358565	-	RHE_CH02963	-	transporter, permease protein
2897	 62.21	0	3099332..3100252	-	306	86358566	-	RHE_CH02964	-	zinc protease protein
2898	 66.67	+1	3100716..3101744	+	342	86358567	-	RHE_CH02965	-	L-iditol 2-dehydrogenase protein
2899	 63.69	0	3101914..3105402	+	1162	86358568	carB	RHE_CH02966	-	carbamoyl phosphate synthase large subunit
2900	 62.41	0	3105474..3106928	-	484	86358569	-	RHE_CH02967	-	putative uracil DNA glycosylase protein
2901	 60.18	0	3106928..3108160	-	410	86358570	-	RHE_CH02968	-	hypothetical protein
2902	 60.80	0	3108413..3108889	+	158	86358571	greA	RHE_CH02969	-	transcription elongation factor GreA
2903	 65.62	+1	3108926..3109975	+	349	86358572	lpcC	RHE_CH02970	-	lipopolysaccharide core biosynthesis mannosyltransferase protein
2904	 61.86	0	3110185..3111516	-	443	86358573	dctA	RHE_CH02971	-	C4-dicarboxylate transporter DctA
2905	 63.98	0	3111757..3113616	+	619	86358574	dctB	RHE_CH02972	-	two-component sensor histidine kinase protein regulating C4-dicarboxylate transport system
2906	 64.22	0	3113621..3114967	+	448	86358575	dctD	RHE_CH02973	-	two-component response regulator protein regulating C4-dicarboxylate transport system
2907	 58.17	-1	3114974..3115597	-	207	86358576	lrp	RHE_CH02974	-	AsnC family leucine-responsive regulatory protein
2908	 63.28	0	3115673..3116647	+	324	86358577	trxBch	RHE_CH02975	-	thioredoxin reductase (NADPH) protein
2909	 59.64	0	3116670..3117566	+	298	86358578	-	RHE_CH02976	-	LysR family transcriptional regulator
2910	 56.12	-1	3118119..3118412	+	97	86358579	-	RHE_CH02977	-	ArsR family transcriptional regulator
2911	 64.36	0	3118414..3119499	+	361	86358580	-	RHE_CH02978	-	MFS family transporter
2912	 63.20	0	3119518..3120729	+	403	86358581	nerA	RHE_CH02979	-	glycerol trinitrate reductase protein
2913	 64.17	0	3120955..3121755	+	266	86358582	-	RHE_CH02980	-	antibiotic resistance (streptomycin kinase) protein
2914	 57.87	-1	3121822..3122844	-	340	86358583	-	RHE_CH02981	-	LacI family transcriptional regulator
2915	 59.55	0	3123105..3124439	+	444	86358584	-	RHE_CH02982	-	sugar ABC transporter, substrate-binding protein
2916	 57.49	-1	3124541..3125488	+	315	86358585	-	RHE_CH02983	-	sugar ABC transporter, permease protein
2917	 59.02	0	3125485..3126426	+	313	86358586	-	RHE_CH02984	-	sugar ABC transporter, permease protein
2918	 56.61	-1	3126423..3126611	+	62	86358587	-	RHE_CH02985	-	hypothetical protein
2919	 58.83	0	3126615..3127712	+	365	86358588	-	RHE_CH02986	-	sugar ABC transporter, ATP-binding protein
2920	 59.77	0	3127846..3128700	+	284	86358589	-	RHE_CH02987	-	sugar ABC transporter, ATP-binding protein
2921	 63.87	0	3128712..3130391	+	559	86358590	dak	RHE_CH02988	-	dihydroxyacetone kinase protein
2922	 63.25	0	3130506..3131528	-	340	86358591	-	RHE_CH02989	-	hypothetical protein
2923	 62.46	0	3131611..3132561	+	316	86358592	-	RHE_CH02990	-	LysR family transcriptional regulator
2924	 59.52	0	3132586..3133089	+	167	86358593	-	RHE_CH02991	-	hypothetical protein
2925	 62.85	0	3133196..3133483	-	95	86358594	-	RHE_CH02992	-	hypothetical protein
2926	 60.32	0	3133804..3134811	+	335	86358595	chaA	RHE_CH02993	-	LPS-associated cation exporter (Ca2+/H+ antiporter) protein
2927	 54.78	-2	3134851..3135540	-	229	86358596	-	RHE_CH02994	-	hypothetical protein
2928	 58.97	0	3135636..3136505	-	289	86358597	kdsB2	RHE_CH02995	-	3-deoxy-manno-octulosonate cytidylyltransferase protein
2929	 60.58	0	3136553..3137554	-	333	86358598	lpcA	RHE_CH02996	-	galactosyltransferase protein
2930	 61.11	0	3137639..3138052	-	137	86358599	-	RHE_CH02997	-	hypothetical protein
2931	 61.76	0	3138198..3139400	-	400	86358600	aatAch	RHE_CH02998	-	aspartate aminotransferase
2932	 60.60	0	3139907..3141538	+	543	86358601	-	RHE_CH02999	-	putative glycosyltransferase protein
2933	 64.32	0	3141813..3144155	+	780	86358602	-	RHE_CH03000	-	hypothetical protein
2934	 63.91	0	3144145..3144906	+	253	86358603	-	RHE_CH03001	-	hypothetical protein
2935	 64.22	0	3144966..3146108	+	380	86358604	-	RHE_CH03002	-	putative glucose dehydrogenase B protein
2936	 60.08	0	3146113..3146583	-	156	86358605	-	RHE_CH03003	-	hypothetical protein
2937	 62.25	0	3146713..3147573	+	286	86358606	-	RHE_CH03004	-	putative transporter, permease protein
2938	 58.33	-1	3148058..3148273	+	71	86358607	cspA5	RHE_CH03005	-	cold shock protein
2939	 63.36	0	3148422..3148874	+	150	86358608	-	RHE_CH03006	-	hypothetical protein
61.61	MEAN

3.19	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.