IslandPathversion 1.0

IslandPath Analysis: Rhizobium etli CFN 42



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 61.61 STD DEV: 3.19
Rhizobium etli CFN 42, complete genome - 1..4381608
4035 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2757	 57.63	-1	2944620..2946212	-	530	86358426	-	RHE_CH02823	-	hypothetical protein
2758	 53.25	-2	2946306..2946551	-	81	86358427	-	RHE_CH02824	-	hypothetical protein
2759	 62.98	0	2946684..2947415	+	243	86358428	-	RHE_CH02825	-	putative branched-chain amino acid permease (azaleucine resistance) protein
2760	 62.14	0	2947419..2947727	+	102	86358429	-	RHE_CH02826	-	hypothetical protein
2761	 63.17	0	2947792..2949678	-	628	86358430	-	RHE_CH02827	-	aminopeptidase P protein
2762	 63.25	0	2950462..2951340	-	292	86358431	prmA	RHE_CH02828	-	ribosomal protein L11 methyltransferase
2763	 58.00	-1	2951409..2952008	-	199	86358432	senC	RHE_CH02829	-	cytochrome-c oxidase assembly factor protein
2764	 63.00	0	2952392..2954356	+	654	86358433	mcpW	RHE_CH02830	-	methyl-accepting chemotaxis protein
2765	 59.83	0	2954359..2954826	+	155	86358434	cheW2	RHE_CH02831	-	chemotaxis signal transduction protein
2766	 58.74	0	2955079..2955570	-	163	86358435	creA	RHE_CH02832	-	CreA protein
2767	 63.28	0	2955650..2956240	-	196	86358436	-	RHE_CH02833	-	DNA polymerase III, epsilon subunit protein
2768	 62.94	0	2956524..2957060	+	178	86358437	-	RHE_CH02834	-	acetyltransferase protein
2769	 62.91	0	2957093..2959249	-	718	86358438	ligA	RHE_CH02835	-	NAD-dependent DNA ligase LigA
2770	 60.10	0	2959434..2959844	-	136	86358439	-	RHE_CH02836	-	hypothetical protein
2771	 65.59	+1	2959868..2961541	-	557	86358440	recN	RHE_CH02837	-	DNA repair protein
2772	 59.08	0	2961547..2962416	-	289	86358441	-	RHE_CH02838	-	hypothetical protein
2773	 61.55	0	2962685..2963641	-	318	86358442	lpxC	RHE_CH02839	-	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
2774	 65.28	+1	2963903..2965633	-	576	162329636	ftsZ2	RHE_CH02840	-	cell division protein FtsZ
2775	 64.56	0	2965690..2967021	-	443	86358444	ftsA	RHE_CH02841	-	cell division protein
2776	 62.68	0	2967018..2967971	-	317	86358445	ftsQ	RHE_CH02842	-	cell division protein
2777	 58.47	0	2967938..2968864	-	308	86358446	ddl	RHE_CH02843	-	D-alanine--D-alanine ligase
2778	 61.51	0	2969313..2970242	+	309	86358447	-	RHE_CH02844	-	putative UDP-glucose 4-epimerase protein
2779	 61.74	0	2970246..2971220	-	324	86358448	murB	RHE_CH02845	-	UDP-N-acetylenolpyruvoylglucosamine reductase
2780	 61.30	0	2971217..2972632	-	471	162329635	murC	RHE_CH02846	-	UDP-N-acetylmuramate--L-alanine ligase
2781	 64.44	0	2972629..2973753	-	374	86358450	murG	RHE_CH02847	-	N-acetylglucosaminyl transferase
2782	 62.68	0	2973760..2974914	-	384	86358451	ftsW	RHE_CH02848	-	cell division protein
2783	 66.45	+1	2974916..2976328	-	470	86358452	murD	RHE_CH02849	-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
2784	 61.04	0	2976336..2977436	-	366	86358453	mraY	RHE_CH02850	-	phospho-N-acetylmuramoyl-pentapeptide-transferase
2785	 63.13	0	2977459..2978871	-	470	86358454	murF	RHE_CH02851	-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysyl-D -alanyl-D-alanine synthetase protein
2786	 64.69	0	2978895..2980415	-	506	86358455	murE	RHE_CH02852	-	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
2787	 60.58	0	2980422..2982179	-	585	86358456	ftsI	RHE_CH02853	-	cell division penicillin-binding protein
2788	 60.93	0	2982179..2982649	-	156	86358457	-	RHE_CH02854	-	hypothetical protein
2789	 64.23	0	2982651..2983676	-	341	86358458	mraW	RHE_CH02855	-	S-adenosyl-methyltransferase MraW
2790	 59.84	0	2983694..2984323	-	209	86358459	mraZ	RHE_CH02856	-	cell division protein MraZ
2791	 61.65	0	2984997..2986172	-	391	86358460	-	RHE_CH02857	-	sarcosine oxidase protein
2792	 64.49	0	2986183..2987328	-	381	86358461	-	RHE_CH02858	-	sarcosine oxidase protein
2793	 56.41	-1	2987487..2988110	-	207	86358462	-	RHE_CH02859	-	transglycosylase protein
2794	 61.04	0	2988371..2989045	-	224	86358463	-	RHE_CH02860	-	N-acetylmuramoyl-L-alanine amidase protein
2795	 58.47	0	2989129..2989836	-	235	86358464	djlA	RHE_CH02861	-	DnaJ family molecular chaperone
2796	 61.80	0	2990227..2991438	+	403	86358465	pfk	RHE_CH02862	-	pyrophosphate--fructose-6-phosphate 1-phosphotransferase
2797	 63.05	0	2991497..2992132	+	211	86358466	-	RHE_CH02863	-	amino acid efflux LysE family protein
2798	 62.63	0	2992278..2993219	+	313	86358467	-	RHE_CH02864	-	transglycosylase protein
2799	 65.40	+1	2993266..2994687	-	473	86358468	-	RHE_CH02865	-	putative 6-aminohexanoate-dimer hydrolase protein
2800	 60.96	0	2994881..2996125	+	414	86358469	-	RHE_CH02866	-	hypothetical protein
2801	 60.89	0	2996122..2996796	+	224	86358470	-	RHE_CH02867	-	SAM-dependent methyltransferase protein
2802	 59.77	0	2996924..2997721	+	265	86358471	lyc	RHE_CH02868	-	glycoside hydrolase protein
2803	 65.68	+1	2997803..2999023	+	406	86358472	-	RHE_CH02869	-	membrane-bound lytic murein transglycosylase protein
2804	 64.24	0	2999152..3000057	+	301	86358473	-	RHE_CH02870	-	putative permease protein
2805	 62.57	0	3000512..3001414	-	300	86358474	metF	RHE_CH02871	-	5,10-methylenetetrahydrofolate reductase protein
2806	 65.11	+1	3001416..3002444	-	342	86358475	-	RHE_CH02872	-	ArsR family methyltransferase transcriptional regulator
2807	 61.33	0	3002606..3004255	-	549	86358476	-	RHE_CH02873	-	putative ABC transporter ATP-binding protein
2808	 63.16	0	3004354..3005094	-	246	86358477	-	RHE_CH02874	-	ribonuclease
2809	 64.09	0	3005318..3006247	+	309	86358478	-	RHE_CH02875	-	putative lysophospholipase protein
2810	 60.71	0	3006282..3007238	+	318	86358479	-	RHE_CH02876	-	putative transporter, permease protein
2811	 62.98	0	3007345..3008457	+	370	86358480	-	RHE_CH02877	-	acyl-CoA transferases/L-carnitine dehydratase protein
2812	 63.77	0	3008454..3010112	+	552	86358481	ilvG	RHE_CH02878	-	acetolactate synthase 2 catalytic subunit
2813	 62.61	0	3010153..3010497	-	114	86358482	-	RHE_CH02879	-	putative translation initiation inhibitor protein
2814	 59.88	0	3010570..3010908	-	112	86358483	-	RHE_CH02880	-	hypothetical protein
2815	 63.69	0	3010980..3011819	-	279	86358484	-	RHE_CH02881	-	hypothetical protein
2816	 63.24	0	3012075..3013475	+	466	86358485	-	RHE_CH02882	-	hypothetical protein
2817	 61.34	0	3013550..3014338	-	262	86358486	parA1	RHE_CH02883	-	chromosome partitioning protein A
2818	 62.86	0	3014476..3015735	-	419	86358487	-	RHE_CH02884	-	alcohol dehydrogenase protein
2819	 62.19	0	3015627..3017012	-	461	86358488	-	RHE_CH02885	-	aldehyde dehydrogenase
2820	 59.14	0	3017220..3018587	-	455	86358489	glnA3	RHE_CH02886	-	glutamine synthetase protein
2821	 59.77	0	3018734..3020284	-	516	86358490	-	RHE_CH02887	-	amino acid transporter protein
2822	 60.89	0	3020400..3021092	-	230	86358491	-	RHE_CH02888	-	putative N-formylglutamate amidohydrolase protein
2823	 59.55	0	3021274..3022215	+	313	86358492	-	RHE_CH02889	-	RpiR family transcriptional regulator
2824	 59.78	0	3022404..3023507	+	367	86358493	-	RHE_CH02890	-	ABC transporter substrate-binding protein
2825	 60.63	0	3023579..3024472	+	297	86358494	-	RHE_CH02891	-	ABC transporter permease
2826	 60.46	0	3024469..3025257	+	262	86358495	-	RHE_CH02892	-	ABC transporter permease
2827	 61.77	0	3025270..3026331	+	353	86358496	-	RHE_CH02893	-	ABC transporter ATP-binding protein
2828	 62.52	0	3026407..3027492	-	361	86358497	-	RHE_CH02894	-	sugar ABC transporter, ATP-binding protein
2829	 62.43	0	3027419..3028480	-	353	86358498	-	RHE_CH02895	-	oxidoreductase protein
2830	 61.67	0	3028477..3029316	-	279	86358499	-	RHE_CH02896	-	sugar ABC transporter, permease protein
2831	 60.02	0	3029326..3030273	-	315	86358500	-	RHE_CH02897	-	sugar ABC transporter, permease protein
2832	 60.48	0	3030489..3031748	-	419	86358501	-	RHE_CH02898	-	sugar ABC transporter, substrate-binding protein
2833	 64.18	0	3032279..3033163	+	294	86358502	-	RHE_CH02899	-	putative N-acetylglucosamine kinase protein
2834	 66.80	+1	3033160..3033918	+	252	86358503	-	RHE_CH02900	-	transcriptional regulator protein
2835	 62.60	0	3034038..3037853	-	1271	86358504	metH	RHE_CH02901	-	B12-dependent methionine synthase
2836	 64.05	0	3037981..3039240	+	419	86358505	-	RHE_CH02902	-	hypothetical protein
2837	 60.61	0	3039305..3039799	-	164	86358506	-	RHE_CH02903	-	hypothetical protein
2838	 62.75	0	3039888..3040499	-	203	86358507	-	RHE_CH02904	-	putative flavin reductase protein
2839	 67.88	+1	3040504..3041247	-	247	86358508	-	RHE_CH02905	-	hydantoin racemase protein
2840	 61.44	0	3041249..3042070	-	273	86358509	-	RHE_CH02906	-	spermidine/putrescine ABC transporter permease
2841	 59.23	0	3042072..3042986	-	304	86358510	-	RHE_CH02907	-	spermidine/putrescine ABC transporter permease
2842	 61.28	0	3043250..3044548	-	432	86358511	-	RHE_CH02908	-	spermidine/putrescine ABC transporter substrate-binding protein
2843	 63.64	0	3044594..3045682	-	362	86358512	-	RHE_CH02909	-	spermidine/putrescine ABC transporter ATP-binding protein
2844	 62.73	0	3045950..3046660	+	236	86358513	-	RHE_CH02910	-	GntR family transcriptional regulator
2845	 61.17	0	3046666..3047193	+	175	86358514	-	RHE_CH02911	-	hypothetical protein
2846	 61.46	0	3047321..3047704	-	127	86358515	-	RHE_CH02912	-	hypothetical protein
2847	 68.75	+2	3048283..3048522	+	79	86358516	-	RHE_CH02913	-	hypothetical protein
2848	 57.41	-1	3049012..3049335	+	107	86358517	-	RHE_CH02914	-	hypothetical protein
2849	 59.13	0	3049275..3050057	+	260	86358518	cinRch	RHE_CH02915	-	autoinducer transcriptional regulator protein
2850	 61.56	0	3050272..3050937	+	221	86358519	cinI	RHE_CH02916	-	N-acyl-L-homoserine lactone (AHL) synthase protein
2851	 58.80	0	3051257..3051790	-	177	86358520	-	RHE_CH02917	-	two-component response regulator protein
2852	 54.65	-2	3051864..3053078	-	404	86358521	-	RHE_CH02919	-	integrase/recombinase protein
2853	 54.65	-2	3053075..3053332	-	85	86358522	-	RHE_CH02920	-	hypothetical protein
2854	 54.79	-2	3053334..3053552	-	72	86358523	-	RHE_CH02921	-	hypothetical protein
2855	 54.14	-2	3053775..3054269	+	164	86358524	-	RHE_CH02922	-	hypothetical protein
2856	 54.05	-2	3054572..3055435	-	287	86358525	-	RHE_CH02923	-	hypothetical protein
61.61	MEAN

3.19	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.