IslandPathversion 1.0

IslandPath Analysis: Rhizobium etli CFN 42



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 61.61 STD DEV: 3.19
Rhizobium etli CFN 42, complete genome - 1..4381608
4035 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2725	 61.49	0	2901668..2903425	-	585	86358394	ilvI	RHE_CH02790	-	acetolactate synthase 3 catalytic subunit
2726	 63.32	0	2903803..2905806	+	667	86358395	-	RHE_CH02791	-	hypothetical protein
2727	 64.15	0	2905791..2906705	-	304	86358396	dapAch3	RHE_CH02792	-	dihydrodipicolinate synthase protein
2728	 64.99	+1	2906992..2907885	-	297	86358397	miaA	RHE_CH02793	-	tRNA delta(2)-isopentenylpyrophosphate transferase
2729	 61.84	0	2907887..2908777	+	296	86358398	serB	RHE_CH02794	-	phosphoserine phosphatase protein
2730	 62.75	0	2908888..2910597	-	569	86358399	degPch4	RHE_CH02795	-	serine protease DO-like protein
2731	 64.06	0	2910797..2911756	-	319	86358400	hflC	RHE_CH02796	-	hydrolase serine protease transmembrane subunit C protein
2732	 61.52	0	2911762..2912850	-	362	86358401	hflK	RHE_CH02797	-	hydrolase serine protease transmembrane subunit K protein
2733	 63.39	0	2913000..2913518	-	172	86358402	folA	RHE_CH02798	-	dihydrofolate reductase protein
2734	 59.25	0	2913532..2914326	-	264	86358403	thyA	RHE_CH02799	-	thymidylate synthase
2735	 59.11	0	2914927..2915442	+	171	86358404	-	RHE_CH02800	-	hypothetical protein
2736	 61.03	0	2915493..2915687	+	64	86358405	-	RHE_CH02801	-	hypothetical protein
2737	 59.14	0	2915737..2916015	+	92	86358406	-	RHE_CH02802	-	hypothetical protein
2738	 64.19	0	2916072..2919782	-	1236	86358407	-	RHE_CH02803	-	hypothetical protein
2739	 62.12	0	2919903..2921309	-	468	86358408	dld	RHE_CH02804	-	D-lactate dehydrogenase (cytochrome) protein
2740	 65.51	+1	2921572..2922606	-	344	86358409	-	RHE_CH02805	-	oxidoreductase protein
2741	 65.89	+1	2922699..2923601	+	300	86358410	-	RHE_CH02806	-	LysR family transcriptional regulator
2742	 65.82	+1	2924835..2925776	-	313	86358411	-	RHE_CH02808	-	AraC family transcriptional regulator
2743	 59.56	0	2925809..2926216	+	135	86358412	-	RHE_CH02809	-	hypothetical protein
2744	 65.62	+1	2926284..2926949	-	221	86358413	ompA	RHE_CH02810	-	outer membrane lipoprotein
2745	 60.76	0	2927186..2928184	-	332	86358414	flaCch5	RHE_CH02811	-	flagellin C protein
2746	 64.45	0	2928455..2931610	-	1051	86358415	-	RHE_CH02812	-	acriflavin resistance efflux transporter
2747	 63.43	0	2931607..2932812	-	401	86358416	-	RHE_CH02813	-	HlyD family protein secretion protein
2748	 63.17	0	2933075..2933989	-	304	86358417	cyaJ	RHE_CH02814	-	adenylate cyclase protein
2749	 57.93	-1	2934193..2935737	-	514	86358418	-	RHE_CH02815	-	hypothetical protein
2750	 59.78	0	2935740..2936843	-	367	86358419	-	RHE_CH02816	-	hypothetical protein
2751	 55.74	-1	2937027..2938811	-	594	86358420	-	RHE_CH02817	-	putative serine protein kinase protein
2752	 60.80	0	2939375..2939851	-	158	86358421	-	RHE_CH02818	-	hypothetical protein
2753	 63.12	0	2940136..2942562	+	808	86358422	uvrD2	RHE_CH02819	-	DNA helicase II protein
2754	 59.33	0	2942588..2943037	-	149	86358423	-	RHE_CH02820	-	hypothetical protein
2755	 63.32	0	2943192..2943818	+	208	86358424	pncA	RHE_CH02821	-	pyrazinamidase/nicotinamidase protein
2756	 63.81	0	2943906..2944571	+	221	86358425	-	RHE_CH02822	-	putative pyrimidine reductase protein
2757	 57.63	-1	2944620..2946212	-	530	86358426	-	RHE_CH02823	-	hypothetical protein
2758	 53.25	-2	2946306..2946551	-	81	86358427	-	RHE_CH02824	-	hypothetical protein
2759	 62.98	0	2946684..2947415	+	243	86358428	-	RHE_CH02825	-	putative branched-chain amino acid permease (azaleucine resistance) protein
2760	 62.14	0	2947419..2947727	+	102	86358429	-	RHE_CH02826	-	hypothetical protein
2761	 63.17	0	2947792..2949678	-	628	86358430	-	RHE_CH02827	-	aminopeptidase P protein
2762	 63.25	0	2950462..2951340	-	292	86358431	prmA	RHE_CH02828	-	ribosomal protein L11 methyltransferase
2763	 58.00	-1	2951409..2952008	-	199	86358432	senC	RHE_CH02829	-	cytochrome-c oxidase assembly factor protein
2764	 63.00	0	2952392..2954356	+	654	86358433	mcpW	RHE_CH02830	-	methyl-accepting chemotaxis protein
2765	 59.83	0	2954359..2954826	+	155	86358434	cheW2	RHE_CH02831	-	chemotaxis signal transduction protein
2766	 58.74	0	2955079..2955570	-	163	86358435	creA	RHE_CH02832	-	CreA protein
2767	 63.28	0	2955650..2956240	-	196	86358436	-	RHE_CH02833	-	DNA polymerase III, epsilon subunit protein
2768	 62.94	0	2956524..2957060	+	178	86358437	-	RHE_CH02834	-	acetyltransferase protein
2769	 62.91	0	2957093..2959249	-	718	86358438	ligA	RHE_CH02835	-	NAD-dependent DNA ligase LigA
2770	 60.10	0	2959434..2959844	-	136	86358439	-	RHE_CH02836	-	hypothetical protein
2771	 65.59	+1	2959868..2961541	-	557	86358440	recN	RHE_CH02837	-	DNA repair protein
2772	 59.08	0	2961547..2962416	-	289	86358441	-	RHE_CH02838	-	hypothetical protein
2773	 61.55	0	2962685..2963641	-	318	86358442	lpxC	RHE_CH02839	-	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
2774	 65.28	+1	2963903..2965633	-	576	162329636	ftsZ2	RHE_CH02840	-	cell division protein FtsZ
2775	 64.56	0	2965690..2967021	-	443	86358444	ftsA	RHE_CH02841	-	cell division protein
2776	 62.68	0	2967018..2967971	-	317	86358445	ftsQ	RHE_CH02842	-	cell division protein
2777	 58.47	0	2967938..2968864	-	308	86358446	ddl	RHE_CH02843	-	D-alanine--D-alanine ligase
2778	 61.51	0	2969313..2970242	+	309	86358447	-	RHE_CH02844	-	putative UDP-glucose 4-epimerase protein
2779	 61.74	0	2970246..2971220	-	324	86358448	murB	RHE_CH02845	-	UDP-N-acetylenolpyruvoylglucosamine reductase
2780	 61.30	0	2971217..2972632	-	471	162329635	murC	RHE_CH02846	-	UDP-N-acetylmuramate--L-alanine ligase
2781	 64.44	0	2972629..2973753	-	374	86358450	murG	RHE_CH02847	-	N-acetylglucosaminyl transferase
2782	 62.68	0	2973760..2974914	-	384	86358451	ftsW	RHE_CH02848	-	cell division protein
2783	 66.45	+1	2974916..2976328	-	470	86358452	murD	RHE_CH02849	-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
2784	 61.04	0	2976336..2977436	-	366	86358453	mraY	RHE_CH02850	-	phospho-N-acetylmuramoyl-pentapeptide-transferase
2785	 63.13	0	2977459..2978871	-	470	86358454	murF	RHE_CH02851	-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysyl-D -alanyl-D-alanine synthetase protein
2786	 64.69	0	2978895..2980415	-	506	86358455	murE	RHE_CH02852	-	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
2787	 60.58	0	2980422..2982179	-	585	86358456	ftsI	RHE_CH02853	-	cell division penicillin-binding protein
2788	 60.93	0	2982179..2982649	-	156	86358457	-	RHE_CH02854	-	hypothetical protein
2789	 64.23	0	2982651..2983676	-	341	86358458	mraW	RHE_CH02855	-	S-adenosyl-methyltransferase MraW
2790	 59.84	0	2983694..2984323	-	209	86358459	mraZ	RHE_CH02856	-	cell division protein MraZ
2791	 61.65	0	2984997..2986172	-	391	86358460	-	RHE_CH02857	-	sarcosine oxidase protein
2792	 64.49	0	2986183..2987328	-	381	86358461	-	RHE_CH02858	-	sarcosine oxidase protein
2793	 56.41	-1	2987487..2988110	-	207	86358462	-	RHE_CH02859	-	transglycosylase protein
2794	 61.04	0	2988371..2989045	-	224	86358463	-	RHE_CH02860	-	N-acetylmuramoyl-L-alanine amidase protein
2795	 58.47	0	2989129..2989836	-	235	86358464	djlA	RHE_CH02861	-	DnaJ family molecular chaperone
2796	 61.80	0	2990227..2991438	+	403	86358465	pfk	RHE_CH02862	-	pyrophosphate--fructose-6-phosphate 1-phosphotransferase
2797	 63.05	0	2991497..2992132	+	211	86358466	-	RHE_CH02863	-	amino acid efflux LysE family protein
2798	 62.63	0	2992278..2993219	+	313	86358467	-	RHE_CH02864	-	transglycosylase protein
2799	 65.40	+1	2993266..2994687	-	473	86358468	-	RHE_CH02865	-	putative 6-aminohexanoate-dimer hydrolase protein
2800	 60.96	0	2994881..2996125	+	414	86358469	-	RHE_CH02866	-	hypothetical protein
2801	 60.89	0	2996122..2996796	+	224	86358470	-	RHE_CH02867	-	SAM-dependent methyltransferase protein
2802	 59.77	0	2996924..2997721	+	265	86358471	lyc	RHE_CH02868	-	glycoside hydrolase protein
2803	 65.68	+1	2997803..2999023	+	406	86358472	-	RHE_CH02869	-	membrane-bound lytic murein transglycosylase protein
2804	 64.24	0	2999152..3000057	+	301	86358473	-	RHE_CH02870	-	putative permease protein
2805	 62.57	0	3000512..3001414	-	300	86358474	metF	RHE_CH02871	-	5,10-methylenetetrahydrofolate reductase protein
2806	 65.11	+1	3001416..3002444	-	342	86358475	-	RHE_CH02872	-	ArsR family methyltransferase transcriptional regulator
2807	 61.33	0	3002606..3004255	-	549	86358476	-	RHE_CH02873	-	putative ABC transporter ATP-binding protein
2808	 63.16	0	3004354..3005094	-	246	86358477	-	RHE_CH02874	-	ribonuclease
2809	 64.09	0	3005318..3006247	+	309	86358478	-	RHE_CH02875	-	putative lysophospholipase protein
2810	 60.71	0	3006282..3007238	+	318	86358479	-	RHE_CH02876	-	putative transporter, permease protein
2811	 62.98	0	3007345..3008457	+	370	86358480	-	RHE_CH02877	-	acyl-CoA transferases/L-carnitine dehydratase protein
2812	 63.77	0	3008454..3010112	+	552	86358481	ilvG	RHE_CH02878	-	acetolactate synthase 2 catalytic subunit
2813	 62.61	0	3010153..3010497	-	114	86358482	-	RHE_CH02879	-	putative translation initiation inhibitor protein
2814	 59.88	0	3010570..3010908	-	112	86358483	-	RHE_CH02880	-	hypothetical protein
2815	 63.69	0	3010980..3011819	-	279	86358484	-	RHE_CH02881	-	hypothetical protein
2816	 63.24	0	3012075..3013475	+	466	86358485	-	RHE_CH02882	-	hypothetical protein
2817	 61.34	0	3013550..3014338	-	262	86358486	parA1	RHE_CH02883	-	chromosome partitioning protein A
2818	 62.86	0	3014476..3015735	-	419	86358487	-	RHE_CH02884	-	alcohol dehydrogenase protein
2819	 62.19	0	3015627..3017012	-	461	86358488	-	RHE_CH02885	-	aldehyde dehydrogenase
2820	 59.14	0	3017220..3018587	-	455	86358489	glnA3	RHE_CH02886	-	glutamine synthetase protein
2821	 59.77	0	3018734..3020284	-	516	86358490	-	RHE_CH02887	-	amino acid transporter protein
2822	 60.89	0	3020400..3021092	-	230	86358491	-	RHE_CH02888	-	putative N-formylglutamate amidohydrolase protein
2823	 59.55	0	3021274..3022215	+	313	86358492	-	RHE_CH02889	-	RpiR family transcriptional regulator
2824	 59.78	0	3022404..3023507	+	367	86358493	-	RHE_CH02890	-	ABC transporter substrate-binding protein
61.61	MEAN

3.19	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.