IslandPathversion 1.0

IslandPath Analysis: Rhizobium etli CFN 42



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 61.61 STD DEV: 3.19
Rhizobium etli CFN 42, complete genome - 1..4381608
4035 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2681	 66.21	+1	2858890..2859546	-	218	86358350	-	RHE_CH02745	-	TetR family transcriptional regulator
2682	 63.20	0	2859543..2860061	-	172	86358351	-	RHE_CH02746	-	hypothetical protein
2683	 66.79	+1	2860214..2861845	-	543	86358352	rtlK	RHE_CH02747	-	L-ribulokinase protein
2684	 64.16	0	2861998..2862714	-	238	86358353	-	RHE_CH02748	-	putative hydrolase protein
2685	 63.65	0	2862718..2863446	-	242	86358354	glpQ	RHE_CH02749	-	glycerophosphoryl diester phosphodiesterase protein
2686	 60.48	0	2863475..2864395	-	306	86358355	ugpEch1	RHE_CH02750	-	sn-glycerol-3-phosphate ABC transporter, permease protein
2687	 60.46	0	2864398..2865363	-	321	86358356	ugpAch1	RHE_CH02751	-	sn-glycerol-3-phosphate ABC transporter, permease protein
2688	 62.39	0	2865377..2866474	-	365	86358357	ugpBch1	RHE_CH02752	-	sn-glycerol-3-phosphate ABC transporter, substrate-binding protein
2689	 59.58	0	2866888..2867931	+	347	86358358	ugpCch1	RHE_CH02753	-	glycerol-3-phosphate transporter ATP-binding subunit
2690	 59.70	0	2868014..2869018	+	334	86358359	-	RHE_CH02754	-	DeoR family transcriptional regulator
2691	 60.69	0	2869196..2870836	-	546	86358360	-	RHE_CH02755	-	hypothetical protein
2692	 63.55	0	2870878..2871936	-	352	86358361	-	RHE_CH02756	-	glycosyltransferase
2693	 64.80	0	2872027..2872935	-	302	86358362	-	RHE_CH02757	-	AraC family transcriptional regulator
2694	 61.13	0	2873140..2874186	+	348	86358363	adh	RHE_CH02758	-	alcohol dehydrogenase (NADP+) protein
2695	 65.72	+1	2876740..2878005	-	421	86358364	ndhch	RHE_CH02760	-	NADH dehydrogenase protein
2696	 58.71	0	2878245..2878772	-	175	86358365	-	RHE_CH02761	-	hypothetical protein
2697	 60.00	0	2879011..2879475	-	154	86358366	-	RHE_CH02762	-	AsnC family transcriptional regulator
2698	 64.31	0	2879630..2880349	+	239	86358367	-	RHE_CH02763	-	aspartate racemase protein
2699	 60.68	0	2880587..2881504	+	305	86358368	-	RHE_CH02764	-	MarR family transcriptional regulator
2700	 62.34	0	2881565..2882188	+	207	86358369	-	RHE_CH02765	-	TetR family transcriptional regulator
2701	 66.42	+1	2882296..2883510	+	404	86358370	-	RHE_CH02766	-	putative antibiotic resistance permease protein
2702	 62.59	0	2883507..2883923	-	138	86358371	-	RHE_CH02767	-	putative transcriptional regulator protein
2703	 64.69	0	2884046..2884954	+	302	86358372	-	RHE_CH02768	-	hypothetical protein
2704	 62.82	0	2885188..2885940	-	250	86358373	pdxJ	RHE_CH02769	-	pyridoxal phosphate biosynthetic protein PdxJ
2705	 60.32	0	2886372..2887064	+	230	86358374	-	RHE_CH02770	-	transcriptional regulator protein
2706	 62.06	0	2887136..2888263	-	375	86358375	recD	RHE_CH02771	-	exodeoxyribonuclease V alpha subunit protein
2707	 64.49	0	2888347..2889081	-	244	86358376	-	RHE_CH02772	-	LysR family transcriptional regulator
2708	 59.17	0	2889405..2889884	+	159	86358377	-	RHE_CH02773	-	putative carboxymuconolactone decarboxylase protein
2709	 62.17	0	2889954..2890709	+	251	86358378	-	RHE_CH02774	-	hypothetical protein
2710	 62.35	0	2890776..2891192	+	138	86358379	-	RHE_CH02775	-	hypothetical protein
2711	 63.43	0	2891286..2892767	+	493	86358380	-	RHE_CH02776	-	putative mechanosensitive ion channel protein
2712	 62.78	0	2892768..2893256	-	162	86358381	-	RHE_CH02777	-	putative transcriptional regulator protein
2713	 60.10	0	2893689..2894069	+	126	86358382	-	RHE_CH02778	-	hypothetical protein
2714	 66.30	+1	2894053..2894601	+	182	86358383	rpoE2	RHE_CH02779	-	RNA polymerase sigma factor protein (sigma-24)
2715	 65.52	+1	2894598..2895380	+	260	86358384	-	RHE_CH02780	-	hypothetical protein
2716	 64.15	0	2895384..2895740	-	118	86358385	-	RHE_CH02781	-	hypothetical protein
2717	 63.79	0	2895742..2896401	-	219	86358386	nthB	RHE_CH02782	-	nitrile hydratase beta subunit protein
2718	 65.39	+1	2896398..2896946	-	182	86358387	nthA	RHE_CH02783	-	nitrile hydratase alpha subunit protein
2719	 65.60	+1	2897032..2897313	+	93	86358388	-	RHE_CH02784	-	hypothetical protein
2720	 66.59	+1	2897415..2898686	+	423	86358389	-	RHE_CH02785	-	putative oxidoreductase protein
2721	 63.10	0	2898686..2899162	+	158	86358390	-	RHE_CH02786	-	hypothetical protein
2722	 60.44	0	2899154..2899747	-	197	86358391	-	RHE_CH02787	-	amino acid efflux LysE family protein
2723	 63.29	0	2899977..2900747	+	256	86358392	-	RHE_CH02788	-	putative oxidoreductase protein
2724	 62.48	0	2901072..2901644	-	190	86358393	ilvH	RHE_CH02789	-	acetolactate synthase 3 regulatory subunit
2725	 61.49	0	2901668..2903425	-	585	86358394	ilvI	RHE_CH02790	-	acetolactate synthase 3 catalytic subunit
2726	 63.32	0	2903803..2905806	+	667	86358395	-	RHE_CH02791	-	hypothetical protein
2727	 64.15	0	2905791..2906705	-	304	86358396	dapAch3	RHE_CH02792	-	dihydrodipicolinate synthase protein
2728	 64.99	+1	2906992..2907885	-	297	86358397	miaA	RHE_CH02793	-	tRNA delta(2)-isopentenylpyrophosphate transferase
2729	 61.84	0	2907887..2908777	+	296	86358398	serB	RHE_CH02794	-	phosphoserine phosphatase protein
2730	 62.75	0	2908888..2910597	-	569	86358399	degPch4	RHE_CH02795	-	serine protease DO-like protein
2731	 64.06	0	2910797..2911756	-	319	86358400	hflC	RHE_CH02796	-	hydrolase serine protease transmembrane subunit C protein
2732	 61.52	0	2911762..2912850	-	362	86358401	hflK	RHE_CH02797	-	hydrolase serine protease transmembrane subunit K protein
2733	 63.39	0	2913000..2913518	-	172	86358402	folA	RHE_CH02798	-	dihydrofolate reductase protein
2734	 59.25	0	2913532..2914326	-	264	86358403	thyA	RHE_CH02799	-	thymidylate synthase
2735	 59.11	0	2914927..2915442	+	171	86358404	-	RHE_CH02800	-	hypothetical protein
2736	 61.03	0	2915493..2915687	+	64	86358405	-	RHE_CH02801	-	hypothetical protein
2737	 59.14	0	2915737..2916015	+	92	86358406	-	RHE_CH02802	-	hypothetical protein
2738	 64.19	0	2916072..2919782	-	1236	86358407	-	RHE_CH02803	-	hypothetical protein
2739	 62.12	0	2919903..2921309	-	468	86358408	dld	RHE_CH02804	-	D-lactate dehydrogenase (cytochrome) protein
2740	 65.51	+1	2921572..2922606	-	344	86358409	-	RHE_CH02805	-	oxidoreductase protein
2741	 65.89	+1	2922699..2923601	+	300	86358410	-	RHE_CH02806	-	LysR family transcriptional regulator
2742	 65.82	+1	2924835..2925776	-	313	86358411	-	RHE_CH02808	-	AraC family transcriptional regulator
2743	 59.56	0	2925809..2926216	+	135	86358412	-	RHE_CH02809	-	hypothetical protein
2744	 65.62	+1	2926284..2926949	-	221	86358413	ompA	RHE_CH02810	-	outer membrane lipoprotein
2745	 60.76	0	2927186..2928184	-	332	86358414	flaCch5	RHE_CH02811	-	flagellin C protein
2746	 64.45	0	2928455..2931610	-	1051	86358415	-	RHE_CH02812	-	acriflavin resistance efflux transporter
2747	 63.43	0	2931607..2932812	-	401	86358416	-	RHE_CH02813	-	HlyD family protein secretion protein
2748	 63.17	0	2933075..2933989	-	304	86358417	cyaJ	RHE_CH02814	-	adenylate cyclase protein
2749	 57.93	-1	2934193..2935737	-	514	86358418	-	RHE_CH02815	-	hypothetical protein
2750	 59.78	0	2935740..2936843	-	367	86358419	-	RHE_CH02816	-	hypothetical protein
2751	 55.74	-1	2937027..2938811	-	594	86358420	-	RHE_CH02817	-	putative serine protein kinase protein
2752	 60.80	0	2939375..2939851	-	158	86358421	-	RHE_CH02818	-	hypothetical protein
2753	 63.12	0	2940136..2942562	+	808	86358422	uvrD2	RHE_CH02819	-	DNA helicase II protein
2754	 59.33	0	2942588..2943037	-	149	86358423	-	RHE_CH02820	-	hypothetical protein
2755	 63.32	0	2943192..2943818	+	208	86358424	pncA	RHE_CH02821	-	pyrazinamidase/nicotinamidase protein
2756	 63.81	0	2943906..2944571	+	221	86358425	-	RHE_CH02822	-	putative pyrimidine reductase protein
2757	 57.63	-1	2944620..2946212	-	530	86358426	-	RHE_CH02823	-	hypothetical protein
2758	 53.25	-2	2946306..2946551	-	81	86358427	-	RHE_CH02824	-	hypothetical protein
2759	 62.98	0	2946684..2947415	+	243	86358428	-	RHE_CH02825	-	putative branched-chain amino acid permease (azaleucine resistance) protein
2760	 62.14	0	2947419..2947727	+	102	86358429	-	RHE_CH02826	-	hypothetical protein
2761	 63.17	0	2947792..2949678	-	628	86358430	-	RHE_CH02827	-	aminopeptidase P protein
2762	 63.25	0	2950462..2951340	-	292	86358431	prmA	RHE_CH02828	-	ribosomal protein L11 methyltransferase
2763	 58.00	-1	2951409..2952008	-	199	86358432	senC	RHE_CH02829	-	cytochrome-c oxidase assembly factor protein
2764	 63.00	0	2952392..2954356	+	654	86358433	mcpW	RHE_CH02830	-	methyl-accepting chemotaxis protein
2765	 59.83	0	2954359..2954826	+	155	86358434	cheW2	RHE_CH02831	-	chemotaxis signal transduction protein
2766	 58.74	0	2955079..2955570	-	163	86358435	creA	RHE_CH02832	-	CreA protein
2767	 63.28	0	2955650..2956240	-	196	86358436	-	RHE_CH02833	-	DNA polymerase III, epsilon subunit protein
2768	 62.94	0	2956524..2957060	+	178	86358437	-	RHE_CH02834	-	acetyltransferase protein
2769	 62.91	0	2957093..2959249	-	718	86358438	ligA	RHE_CH02835	-	NAD-dependent DNA ligase LigA
2770	 60.10	0	2959434..2959844	-	136	86358439	-	RHE_CH02836	-	hypothetical protein
2771	 65.59	+1	2959868..2961541	-	557	86358440	recN	RHE_CH02837	-	DNA repair protein
2772	 59.08	0	2961547..2962416	-	289	86358441	-	RHE_CH02838	-	hypothetical protein
2773	 61.55	0	2962685..2963641	-	318	86358442	lpxC	RHE_CH02839	-	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
2774	 65.28	+1	2963903..2965633	-	576	162329636	ftsZ2	RHE_CH02840	-	cell division protein FtsZ
2775	 64.56	0	2965690..2967021	-	443	86358444	ftsA	RHE_CH02841	-	cell division protein
2776	 62.68	0	2967018..2967971	-	317	86358445	ftsQ	RHE_CH02842	-	cell division protein
2777	 58.47	0	2967938..2968864	-	308	86358446	ddl	RHE_CH02843	-	D-alanine--D-alanine ligase
2778	 61.51	0	2969313..2970242	+	309	86358447	-	RHE_CH02844	-	putative UDP-glucose 4-epimerase protein
2779	 61.74	0	2970246..2971220	-	324	86358448	murB	RHE_CH02845	-	UDP-N-acetylenolpyruvoylglucosamine reductase
2780	 61.30	0	2971217..2972632	-	471	162329635	murC	RHE_CH02846	-	UDP-N-acetylmuramate--L-alanine ligase
61.61	MEAN

3.19	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.