IslandPathversion 1.0

IslandPath Analysis: Rhizobium etli CFN 42



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 61.61 STD DEV: 3.19
Rhizobium etli CFN 42, complete genome - 1..4381608
4035 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2531	 69.34	+2	2703105..2703851	+	248	86358200	dapB2	RHE_CH02593	-	dihydrodipicolinate reductase protein
2532	 63.94	0	2703885..2704691	-	268	86358201	-	RHE_CH02594	-	ornithine cyclodeaminase protein
2533	 61.54	0	2704889..2705395	-	168	86358202	-	RHE_CH02595	-	acetyltransferase protein
2534	 55.91	-1	2705860..2706231	-	123	86358203	-	RHE_CH02596	-	hypothetical protein
2535	 65.21	+1	2706372..2707193	-	273	86358204	-	RHE_CH02597	-	AraC family transcriptional regulator
2536	 62.55	0	2707192..2708211	+	339	86358205	-	RHE_CH02598	-	hypothetical protein
2537	 67.23	+1	2708656..2710071	+	471	86358206	-	RHE_CH02599	-	pyridoxal-dependent amino acid decarboxylase protein
2538	 64.04	0	2710432..2710812	+	126	86358207	-	RHE_CH02600	-	hypothetical protein
2539	 56.97	-1	2711048..2711470	-	140	86358208	-	RHE_CH02601	-	hypothetical protein
2540	 61.93	0	2711888..2713471	-	527	86358209	-	RHE_CH02602	-	Na+/H+ antiporter protein
2541	 58.57	0	2713685..2715586	+	633	86358210	kupch2	RHE_CH02603	-	potassium transporter protein
2542	 62.05	0	2715709..2716314	+	201	86358211	-	RHE_CH02604	-	ring-cleaving dioxygenase protein
2543	 57.53	-1	2716921..2718408	-	495	86358212	plyA1	RHE_CH02605	-	polysaccharidase protein
2544	 58.13	-1	2718743..2720230	-	495	86358213	plyA2	RHE_CH02606	-	polysaccharidase protein
2545	 66.83	+1	2720613..2721812	-	399	86358214	-	RHE_CH02607	-	hypothetical protein
2546	 61.75	0	2721847..2722986	-	379	86358215	-	RHE_CH02608	-	hypothetical protein
2547	 60.97	0	2722983..2723684	-	233	86358216	-	RHE_CH02609	-	peptide ABC transporter, ATP-binding protein
2548	 65.71	+1	2723765..2725117	-	450	86358217	-	RHE_CH02610	-	hypothetical protein
2549	 62.80	0	2725172..2726179	-	335	86358218	-	RHE_CH02611	-	AraC family transcriptional regulator
2550	 63.23	0	2726324..2726905	-	193	86358219	-	RHE_CH02612	-	hypothetical protein
2551	 57.65	-1	2727017..2727382	-	121	86358220	-	RHE_CH02613	-	hypothetical protein
2552	 60.00	0	2727407..2728126	-	239	86358221	coxP	RHE_CH02614	-	cytochrome-c oxidase subunit III protein
2553	 62.18	0	2728138..2728851	-	237	86358222	coxO	RHE_CH02615	-	cytochrome-c oxidase subunit III protein
2554	 60.09	0	2728848..2730626	-	592	86358223	coxN	RHE_CH02616	-	cytochrome-c oxidase subunit I protein
2555	 61.05	0	2730694..2731512	-	272	86358224	coxM	RHE_CH02617	-	cytochrome-c oxidase subunit II protein
2556	 56.72	-1	2731656..2732057	-	133	86358225	-	RHE_CH02618	-	cytochrome-c protein
2557	 64.83	+1	2732280..2733203	-	307	86358226	-	RHE_CH02619	-	putative metal-dependent hydrolase protein
2558	 62.59	0	2733359..2733922	-	187	86358227	-	RHE_CH02620	-	hypothetical protein
2559	 63.39	0	2734127..2735407	-	426	86358228	-	RHE_CH02621	-	putative metallo-beta-lactamase family protein
2560	 62.46	0	2735404..2735736	-	110	86358229	-	RHE_CH02622	-	hypothetical protein
2561	 60.80	0	2735806..2736180	-	124	86358230	-	RHE_CH02623	-	lactoylglutathione lyase protein
2562	 58.16	-1	2736443..2736877	+	144	86358231	-	RHE_CH02624	-	putative calmodulin-binding protein
2563	 64.65	0	2736976..2737371	-	131	86358232	-	RHE_CH02625	-	hypothetical protein
2564	 63.44	0	2737688..2738710	+	340	86358233	ftsZ1	RHE_CH02626	-	cell division protein FtsZ
2565	 68.24	+2	2738911..2739735	-	274	86358234	-	RHE_CH02627	-	putative transcriptional regulator protein
2566	 69.47	+2	2739828..2740718	+	296	86358235	-	RHE_CH02628	-	putative nucleoside-diphosphate-sugar epimerase dehydratase protein
2567	 63.33	0	2740991..2741200	-	69	86358236	-	RHE_CH02629	-	hypothetical protein
2568	 56.72	-1	2741202..2741603	-	133	86358237	-	RHE_CH02630	-	hypothetical protein
2569	 63.02	0	2741995..2742543	+	182	86358238	-	RHE_CH02631	-	hypothetical protein
2570	 59.88	0	2742597..2742920	+	107	86358239	-	RHE_CH02632	-	hypothetical protein
2571	 65.29	+1	2743047..2747027	-	1326	86358240	-	RHE_CH02633	-	putative RTX toxin hemolysin-type protein
2572	 64.50	0	2746909..2748525	-	538	86358241	-	RHE_CH02634	-	putative RTX toxin hemolysin-type protein
2573	 57.09	-1	2748830..2749330	+	166	86358242	-	RHE_CH02635	-	hypothetical protein
2574	 61.49	0	2749476..2749919	-	147	86358243	-	RHE_CH02636	-	hypothetical protein
2575	 60.87	0	2750031..2750444	-	137	86358244	-	RHE_CH02637	-	hypothetical protein
2576	 63.49	0	2750497..2751189	-	230	86358245	-	RHE_CH02638	-	putative intracellular protease/amidase protein
2577	 59.61	0	2752617..2753651	+	344	86358246	-	RHE_CH02640	-	desaturase protein
2578	 61.22	0	2753648..2753959	+	103	86358247	mocEch	RHE_CH02641	-	ferredoxin of the Rieseke type protein
2579	 60.74	0	2754032..2754976	+	314	86358248	mocBch1	RHE_CH02642	-	rhizopine ABC transporter, substrate-binding protein
2580	 65.09	+1	2755036..2756241	+	401	86358249	mocFch	RHE_CH02643	-	ferredoxin reductase protein
2581	 61.59	0	2756241..2757068	+	275	86358250	-	RHE_CH02644	-	hypothetical protein
2582	 56.77	-1	2757297..2758943	+	548	86358251	-	RHE_CH02645	-	putative sensory box/GGDEF family protein
2583	 54.33	-2	2759060..2759521	+	153	86358252	-	RHE_CH02646	-	hypothetical protein
2584	 56.25	-1	2759635..2760690	+	351	86358253	-	RHE_CH02647	-	menaquinone biosynthesis methyltransferase protein
2585	 57.85	-1	2760690..2763047	+	785	86358254	-	RHE_CH02648	-	putative transcriptional regulator protein
2586	 54.05	-2	2763189..2763608	+	139	86358255	-	RHE_CH02649	-	hypothetical protein
2587	 55.16	-2	2763616..2763954	+	112	86358256	-	RHE_CH02650	-	hypothetical protein
2588	 56.02	-1	2764406..2765344	+	312	86358257	-	RHE_CH02651	-	hypothetical protein
2589	 61.84	0	2765549..2766169	+	206	86358258	-	RHE_CH02652	-	hypothetical protein
2590	 66.27	+1	2766299..2766553	-	84	86358259	-	RHE_CH02653	-	hypothetical protein
2591	 51.24	-2	2766894..2767496	+	200	86358260	-	RHE_CH02654	-	hypothetical protein
2592	 61.96	0	2767515..2767790	-	91	86358261	-	RHE_CH02655	-	putative insertion sequence transposase protein
2593	 63.14	0	2768024..2770009	-	661	86358262	lacZ1	RHE_CH02656	-	beta-D-galactosidase protein
2594	 65.04	+1	2770170..2771216	-	348	86358263	-	RHE_CH02657	-	sugar ABC transporter, ATP-binding protein
2595	 62.44	0	2771353..2772204	-	283	86358264	-	RHE_CH02658	-	sugar ABC transporter, permease protein
2596	 60.56	0	2772204..2773088	-	294	86358265	-	RHE_CH02659	-	sugar ABC transporter, permease protein
2597	 62.04	0	2773440..2774714	-	424	86358266	-	RHE_CH02660	-	sugar ABC transporter, substrate-binding protein
2598	 67.18	+1	2774954..2776120	+	388	86358267	-	RHE_CH02661	-	ROK family transcriptional regulator
2599	 59.93	0	2776347..2776613	+	88	86358268	-	RHE_CH02662	-	hypothetical protein
2600	 62.53	0	2776670..2777152	+	160	86358269	-	RHE_CH02663	-	hypothetical protein
2601	 61.81	0	2777251..2777703	-	150	86358270	-	RHE_CH02664	-	hypothetical protein
2602	 65.51	+1	2777877..2778740	-	287	86358271	-	RHE_CH02665	-	putative transporter, permease protein
2603	 65.01	+1	2778944..2780335	+	463	86358272	-	RHE_CH02666	-	GntR family transcriptional regulator
2604	 56.47	-1	2780485..2780886	-	133	86358273	-	RHE_CH02667	-	putative two-component response regulator protein
2605	 58.35	-1	2780897..2782639	-	580	86358274	-	RHE_CH02668	-	putative two-component sensor histidine kinase protein
2606	 58.28	-1	2782660..2783088	+	142	86358275	-	RHE_CH02669	-	putative acetyltransferase protein
2607	 65.87	+1	2783179..2783808	-	209	86358276	-	RHE_CH02670	-	hypothetical protein
2608	 70.60	+2	2783836..2785056	-	406	86358277	-	RHE_CH02671	-	hypothetical protein
2609	 63.91	0	2785172..2785969	+	265	86358278	-	RHE_CH02672	-	hypothetical protein
2610	 66.06	+1	2785975..2786304	+	109	86358279	-	RHE_CH02673	-	hypothetical protein
2611	 66.57	+1	2786397..2787404	-	335	86358280	-	RHE_CH02674	-	short chain dehydrogenase
2612	 66.67	+1	2787686..2788708	+	340	86358281	-	RHE_CH02675	-	alkanal monooxygenase-like protein
2613	 64.27	0	2788977..2789852	+	291	86358282	-	RHE_CH02676	-	LysR family transcriptional regulator
2614	 66.83	+1	2789815..2791053	-	412	86358283	-	RHE_CH02677	-	putative efflux transporter protein
2615	 67.74	+1	2791050..2791700	-	216	86358284	-	RHE_CH02678	-	ArsR family transcriptional regulator
2616	 60.38	0	2791857..2792540	+	227	86358285	-	RHE_CH02679	-	putative methyltransferase protein
2617	 63.71	0	2792521..2793333	-	270	86358286	-	RHE_CH02680	-	ferrichrome ABC transporter ATP-binding protein
2618	 65.66	+1	2793341..2794333	-	330	86358287	-	RHE_CH02681	-	ferrichrome ABC transporter permease
2619	 65.77	+1	2794375..2795379	-	334	86358288	-	RHE_CH02682	-	ferrichrome ABC transporter permease
2620	 62.02	0	2795399..2796367	-	322	86358289	-	RHE_CH02683	-	ferrichrome ABC transporter substrate-binding protein
2621	 67.94	+1	2796471..2797568	-	365	86358290	-	RHE_CH02684	-	adenylate cyclase protein
2622	 58.44	0	2798070..2798312	-	80	86358291	-	RHE_CH02685	-	hypothetical protein
2623	 66.34	+1	2798319..2798627	-	102	86358292	-	RHE_CH02686	-	hypothetical protein
2624	 67.76	+1	2798801..2799259	-	152	86358293	-	RHE_CH02687	-	hypothetical protein
2625	 63.91	0	2799989..2800423	+	144	86358294	ribH2	RHE_CH02688	-	riboflavin synthase subunit beta
2626	 64.20	0	2800571..2801260	+	229	86358295	-	RHE_CH02689	-	putative glyoxalase protein
2627	 61.13	0	2801406..2802182	-	258	86358296	-	RHE_CH02690	-	hypothetical protein
2628	 59.47	0	2802321..2803223	-	300	86358297	-	RHE_CH02691	-	LysR family transcriptional regulator
2629	 59.50	0	2803413..2804138	+	241	86358298	-	RHE_CH02692	-	oxidoreductase protein
2630	 65.44	+1	2804132..2804620	+	162	86358299	-	RHE_CH02693	-	putative translation initiation inhibitor protein
61.61	MEAN

3.19	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.