IslandPathversion 1.0

IslandPath Analysis: Rhizobium etli CFN 42



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 61.61 STD DEV: 3.19
Rhizobium etli CFN 42, complete genome - 1..4381608
4035 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
182	 62.58	0	206169..206975	+	268	86355851	deoD	RHE_CH00192	-	purine nucleoside phosphorylase
183	 63.32	0	206972..207748	+	258	86355852	deoC	RHE_CH00193	-	2-deoxyribose-5-phosphate aldolase protein
184	 65.14	+1	207750..209057	+	435	86355853	deoA	RHE_CH00194	-	thymidine phosphorylase
185	 61.58	0	209064..209633	-	189	86355854	-	RHE_CH00195	-	hypothetical protein
186	 61.09	0	209761..210405	-	214	86355855	upp	RHE_CH00196	-	uracil phosphoribosyltransferase
187	 61.82	0	210515..211483	-	322	86355856	add	RHE_CH00197	-	adenosine deaminase
188	 63.93	0	211480..212760	-	426	86355857	deoB	RHE_CH00198	-	phosphopentomutase
189	 60.82	0	212804..213385	-	193	86355858	-	RHE_CH00199	-	hypothetical protein
190	 59.28	0	213385..214020	-	211	86355859	-	RHE_CH00200	-	hypothetical protein
191	 63.75	0	214409..214717	-	102	86355860	-	RHE_CH00201	-	hypothetical protein
192	 56.88	-1	215130..215405	+	91	86355861	pilA	RHE_CH00202	-	component of type IV pilus, pilin subunit protein
193	 57.50	-1	215529..216041	+	170	86355862	cpaA	RHE_CH00203	-	prepilin peptidase protein
194	 62.62	0	216152..216967	+	271	86355863	cpaB	RHE_CH00204	-	pilus assembly protein
195	 61.86	0	216980..218476	+	498	86355864	cpaC	RHE_CH00205	-	pilus assembly secretion protein
196	 63.25	0	218530..219231	+	233	86355865	cpaD	RHE_CH00206	-	pilus assembly protein
197	 61.27	0	219246..220523	+	425	86355866	cpaE	RHE_CH00207	-	pilus assembly protein, response regulator protein
198	 62.60	0	220556..222031	+	491	86355867	cpaF	RHE_CH00208	-	pilus assembly secretion ATP-binding protein
199	 59.03	0	222036..223043	+	335	86355868	-	RHE_CH00209	-	pilus assembly protein
200	 63.22	0	223059..224045	+	328	86355869	-	RHE_CH00210	-	pilus assembly protein
201	 64.77	0	224173..224805	+	210	86355870	-	RHE_CH00211	-	amino acid efflux LysE family protein
202	 66.79	+1	224847..225686	-	279	86355871	-	RHE_CH00212	-	TPR repeat-containing pilus assembly protein
203	 63.65	0	225828..227219	+	463	86355872	-	RHE_CH00213	-	leucine aminopeptidase protein
204	 58.89	0	227446..227805	+	119	86355873	-	RHE_CH00214	-	insertion sequence transposase protein, ISRM11/ISRM2011-2
205	 60.00	0	227915..228394	+	159	86355874	-	RHE_CH00215	-	insertion sequence transposase protein, ISRm2011-2
206	 62.68	0	228427..228777	+	116	86355875	-	RHE_CH00216	-	MarR family transcriptional regulator
207	 66.43	+1	228789..229646	+	285	86355876	-	RHE_CH00217	-	putative endopeptidase-related protein
208	 64.94	+1	229643..231034	-	463	86355877	gatA1	RHE_CH00218	-	amidase
209	 65.97	+1	231034..231897	-	287	86355878	-	RHE_CH00219	-	peptide ABC transporter permease
210	 64.56	0	231901..232848	-	315	86355879	-	RHE_CH00220	-	peptide ABC transporter permease
211	 60.59	0	233113..234642	-	509	86355880	-	RHE_CH00221	-	peptide ABC transporter substrate-binding protein
212	 66.86	+1	234753..235790	-	345	86355881	-	RHE_CH00222	-	putative peptidase protein
213	 57.95	-1	235876..236070	-	64	86355882	-	RHE_CH00223	-	hypothetical protein
214	 64.17	0	236591..239518	-	975	86355883	-	RHE_CH00224	-	hypothetical protein
215	 60.79	0	239637..240521	-	294	86355884	purU	RHE_CH00225	-	formyltetrahydrofolate deformylase
216	 59.69	0	240830..241846	-	338	86355885	exoZ	RHE_CH00226	-	exopolysaccharide production (acetyltransferase) protein
217	 56.98	-1	241900..243066	-	388	86355886	-	RHE_CH00227	-	hypothetical protein
218	 63.81	0	243183..244232	-	349	86355887	egl	RHE_CH00228	-	endoglucanase precursor (cellulase) protein
219	 65.17	+1	244368..245975	+	535	86355888	-	RHE_CH00229	-	succinoglycan biosynthesis transport protein
220	 61.56	0	246037..246369	+	110	86355889	-	RHE_CH00230	-	hypothetical protein
221	 57.02	-1	246548..246910	-	120	86355890	-	RHE_CH00231	-	hypothetical protein
222	 53.41	-2	247189..248244	-	351	86355891	-	RHE_CH00232	-	hypothetical protein
223	 51.26	-2	248675..249550	+	291	86355892	-	RHE_CH00233	-	hypothetical protein
224	 58.60	0	249731..250375	-	214	86355893	-	RHE_CH00234	-	hypothetical protein
225	 56.67	-1	251222..251791	-	189	86355894	-	RHE_CH00235	-	recombinase
226	 55.20	-2	252008..252757	+	249	86355895	-	RHE_CH00236	-	restriction system protein
227	 60.06	0	252882..253244	+	120	86355896	-	RHE_CH00237	-	insertion sequence transposase protein, ISRm14
228	 62.36	0	253241..253588	+	115	86355897	-	RHE_CH00238	-	insertion sequence transposase protein
229	 59.58	0	253661..255226	+	521	86355898	-	RHE_CH00239	-	insertion sequence transposase protein
230	 55.88	-1	255226..255531	+	101	86355899	-	RHE_CH00240	-	hypothetical protein
231	 56.69	-1	256048..257631	-	527	86355900	-	RHE_CH00241	-	phage integrase family recombinase protein
232	 64.71	0	257995..258402	+	135	86355901	-	RHE_CH00243	-	hypothetical protein
233	 63.95	0	258414..258707	-	97	86355902	-	RHE_CH00244	-	hypothetical protein
234	 67.07	+1	258833..259570	+	245	86355903	-	RHE_CH00245	-	putative glutamine amidotransferase protein
235	 63.98	0	259582..260139	+	185	86355904	nodL	RHE_CH00246	-	maltose O-acetyltransferase protein
236	 61.15	0	260213..260665	+	150	86355905	-	RHE_CH00247	-	hypothetical protein
237	 61.32	0	260803..262635	-	610	86355906	lepA	RHE_CH00248	-	GTP-binding protein LepA
238	 60.52	0	262713..263411	-	232	86355907	-	RHE_CH00249	-	TenA family transcription regulator
239	 64.56	0	263547..264116	+	189	86355908	-	RHE_CH00250	-	LacI family transcription regulator
240	 68.21	+2	264141..264659	+	172	86355909	-	RHE_CH00251	-	acetyltransferase protein
241	 64.03	0	264641..265285	-	214	86355910	-	RHE_CH00252	-	haloacid dehalogenase-like hydrolase
242	 62.18	0	265419..266444	+	341	86355911	aphA	RHE_CH00253	-	acetylpolyamine aminohydrolase protein
243	 60.33	0	266454..267005	+	183	86355912	recX	RHE_CH00254	-	recombination regulator RecX
244	 62.98	0	267099..267992	+	297	86355913	-	RHE_CH00255	-	permease protein
245	 62.61	0	267993..268460	-	155	86355914	-	RHE_CH00256	-	hypothetical protein
246	 61.89	0	268633..269616	+	327	86355915	-	RHE_CH00257	-	hypothetical protein
247	 62.77	0	270110..270622	-	170	86355916	-	RHE_CH00258	-	hypothetical protein
248	 65.20	+1	270856..271671	-	271	86355917	-	RHE_CH00259	-	putative hydrolase protein
249	 55.82	-1	271883..272389	+	168	86355918	infC	RHE_CH00260	-	translation initiation factor IF-3
250	 58.33	-1	272698..272901	+	67	86355919	rpmI	RHE_CH00261	-	50S ribosomal protein L35
251	 60.99	0	272941..273345	+	134	86355920	rplT	RHE_CH00262	-	50S ribosomal protein L20
252	 61.87	0	273498..274580	+	360	86355921	pheS	RHE_CH00263	-	phenylalanyl-tRNA synthetase subunit alpha
253	 63.66	0	274597..277020	+	807	86355922	pheT	RHE_CH00264	-	phenylalanyl-tRNA synthetase subunit beta
254	 57.22	-1	277072..277431	-	119	86355923	-	RHE_CH00265	-	hypothetical protein
255	 62.45	0	277522..278517	-	331	86355924	-	RHE_CH00266	-	aldo/keto reductase family oxidoreductase
256	 63.26	0	278641..279549	+	302	86355925	-	RHE_CH00267	-	LysR family transcriptional regulator
257	 59.84	0	279577..280074	-	165	86355926	-	RHE_CH00268	-	hypothetical protein
258	 60.03	0	280222..280839	+	205	86355927	-	RHE_CH00269	-	hypothetical protein
259	 62.39	0	280829..281272	-	147	86355928	-	RHE_CH00270	-	acetyltransferase protein
260	 60.96	0	281269..282231	-	320	86355929	-	RHE_CH00271	-	aldo/keto reductase family oxidoreductase
261	 59.78	0	282418..283404	+	328	86355930	-	RHE_CH00272	-	oxidoreductase protein
262	 63.47	0	283408..283782	-	124	86355931	-	RHE_CH00273	-	hypothetical protein
263	 63.00	0	283779..284786	-	335	86355932	-	RHE_CH00274	-	glycosyltransferase
264	 63.74	0	284949..286796	+	615	86355933	-	RHE_CH00275	-	hypothetical protein
265	 66.29	+1	287406..288986	+	526	86355934	xseA	RHE_CH00276	-	exodeoxyribonuclease VII large subunit
266	 62.77	0	288989..289579	+	196	86355935	-	RHE_CH00277	-	NAD(P)H dehydrogenase (quinone) protein
267	 64.26	0	289580..290077	-	165	86355936	-	RHE_CH00278	-	MarR family transcriptional regulator
268	 65.46	+1	290159..291070	+	303	86355937	-	RHE_CH00279	-	putative transporter, permease protein (related to regulator protein pecM)
269	 62.92	0	291018..292271	-	417	86355938	-	RHE_CH00280	-	aminopeptidase protein
270	 61.40	0	292402..293085	-	227	86355939	gstch1	RHE_CH00281	-	glutathione S-transferase protein
271	 60.28	0	293111..293611	+	166	86355940	-	RHE_CH00282	-	MarR family transcriptional regulator
272	 63.71	0	293612..294085	-	157	86355941	-	RHE_CH00283	-	hypothetical protein
273	 59.26	0	294089..294439	-	116	86355942	-	RHE_CH00284	-	arsenate reductase protein
274	 64.12	0	294525..295586	-	353	86355943	-	RHE_CH00285	-	hypothetical protein
275	 65.07	+1	296158..296721	+	187	86355944	-	RHE_CH00287	-	methylated-DNA-[protein]-cysteine S-methyltransferase protein
276	 63.27	0	296738..297472	-	244	86355945	-	RHE_CH00288	-	putative oxidoreductase protein
277	 66.19	+1	297509..298351	-	280	86355946	-	RHE_CH00289	-	short chain dehydrogenase
278	 60.40	0	298404..298802	-	132	86355947	-	RHE_CH00290	-	hypothetical protein
279	 63.88	0	298903..299799	+	298	86355948	-	RHE_CH00291	-	LysR family transcriptional regulator
280	 61.29	0	299944..300798	+	284	86355949	-	RHE_CH00292	-	AraC family transcriptional regulator
281	 64.10	0	300838..301383	+	181	86355950	-	RHE_CH00293	-	putative phosphatidylethanolamine-binding protein
61.61	MEAN

3.19	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.