IslandPathversion 1.0

IslandPath Analysis: Rhizobium etli CFN 42



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 61.61 STD DEV: 3.19
Rhizobium etli CFN 42, complete genome - 1..4381608
4035 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2142	 64.22	0	2301290..2302393	+	367	86357811	-	RHE_CH02195	-	hypothetical protein
2143	 60.54	0	2302639..2304645	-	668	86357812	thrS	RHE_CH02196	-	threonyl-tRNA synthetase
2144	 61.36	0	2304766..2305293	-	175	86357813	-	RHE_CH02197	-	hypothetical protein
2145	 60.48	0	2305290..2305709	-	139	86357814	-	RHE_CH02198	-	hypothetical protein
2146	 64.94	+1	2305715..2306119	-	134	86357815	-	RHE_CH02199	-	hypothetical protein
2147	 61.07	0	2306125..2306571	-	148	86357816	nifUch2	RHE_CH02200	-	nitrogen fixation protein
2148	 60.65	0	2306882..2307496	+	204	86357817	folE	RHE_CH02201	-	GTP cyclohydrolase I
2149	 60.49	0	2307522..2307974	+	150	86357818	hisI	RHE_CH02202	-	phosphoribosyl-AMP cyclohydrolase
2150	 63.97	0	2308089..2309051	+	320	86357819	-	RHE_CH02203	-	putative phosphoesterase protein
2151	 59.54	0	2309102..2309536	-	144	86357820	-	RHE_CH02204	-	putative inosine-5`-monophosphate dehydrogenase protein
2152	 63.88	0	2309632..2310420	-	262	86357821	-	RHE_CH02205	-	hypothetical protein
2153	 62.48	0	2310679..2311323	+	214	86357822	-	RHE_CH02206	-	hypothetical protein
2154	 62.76	0	2311572..2312057	+	161	86357823	-	RHE_CH02207	-	hypothetical protein
2155	 62.97	0	2312417..2313391	+	324	86357824	pipch2	RHE_CH02208	-	proline iminopeptidase protein
2156	 59.90	0	2313743..2314348	+	201	86357825	-	RHE_CH02209	-	hypothetical protein
2157	 61.45	0	2314600..2315346	+	248	86357826	-	RHE_CH02210	-	hypothetical protein
2158	 65.53	+1	2315465..2317042	+	525	86357827	-	RHE_CH02211	-	serine-type D-Ala-D-Ala carboxypeptidase protein
2159	 63.41	0	2317155..2317430	+	91	86357828	-	RHE_CH02212	-	hypothetical protein
2160	 62.33	0	2317475..2317912	-	145	86357829	-	RHE_CH02213	-	hypothetical protein
2161	 65.10	+1	2317973..2319376	-	467	86357830	sda	RHE_CH02214	-	L-serine dehydratase protein
2162	 59.64	0	2319781..2320548	+	255	86357831	-	RHE_CH02215	-	hypothetical protein
2163	 61.01	0	2320545..2321534	+	329	86357832	-	RHE_CH02216	-	hypothetical protein
2164	 61.32	0	2321563..2321955	-	130	86357833	-	RHE_CH02217	-	MerR family transcriptional regulator
2165	 62.40	0	2322021..2323427	-	468	86357834	-	RHE_CH02218	-	magnesium transporter protein
2166	 63.64	0	2323668..2324162	+	164	86357835	def2	RHE_CH02219	-	peptide deformylase
2167	 59.65	0	2324233..2324745	+	170	86357836	-	RHE_CH02220	-	hypothetical protein
2168	 64.23	0	2325041..2325409	+	122	86357837	-	RHE_CH02221	-	hypothetical protein
2169	 64.86	+1	2325858..2326577	+	239	86357838	lipB	RHE_CH02223	-	lipoyltransferase
2170	 58.85	0	2326657..2327577	+	306	86357839	-	RHE_CH02224	-	permease protein
2171	 61.42	0	2327676..2328380	+	234	86357840	-	RHE_CH02225	-	hypothetical protein
2172	 63.38	0	2328489..2330498	+	669	86357841	pccA	RHE_CH02226	-	propionyl-CoA carboxylase alpha chain protein
2173	 64.45	0	2330574..2331701	+	375	86357842	adhCch	RHE_CH02227	-	formaldehyde dehydrogenase (glutathione)/alcohol dehydrogenase protein
2174	 60.10	0	2331779..2332174	+	131	86357843	-	RHE_CH02228	-	putative acetyltransferase protein
2175	 64.53	0	2332185..2332652	+	155	86357844	-	RHE_CH02229	-	hypothetical protein
2176	 62.54	0	2332817..2333131	+	104	86357845	sugE	RHE_CH02230	-	chaperone-like transmembrane protein
2177	 58.52	0	2333181..2333573	-	130	86357846	-	RHE_CH02231	-	hypothetical protein
2178	 61.45	0	2333691..2335223	-	510	86357847	pccB	RHE_CH02232	-	propionyl-CoA carboxylase beta chain protein
2179	 63.40	0	2335260..2335718	-	152	86357848	-	RHE_CH02233	-	hypothetical protein
2180	 65.27	+1	2335786..2336571	-	261	86357849	-	RHE_CH02234	-	hypothetical protein
2181	 60.70	0	2336581..2337234	-	217	86357850	gph1	RHE_CH02235	-	phosphoglycolate phosphatase protein
2182	 63.52	0	2337231..2338184	-	317	86357851	rluC	RHE_CH02236	-	pseudouridylate synthase, ribosomal large subunit C protein
2183	 62.96	0	2338317..2338694	-	125	86357852	-	RHE_CH02237	-	CrcB family integral membrane protein
2184	 64.17	0	2338761..2339081	+	106	86357853	-	RHE_CH02238	-	hypothetical protein
2185	 62.36	0	2339154..2340197	-	347	86357854	-	RHE_CH02239	-	hypothetical protein
2186	 62.73	0	2340270..2340650	-	126	86357855	-	RHE_CH02240	-	hypothetical protein
2187	 65.17	+1	2341125..2342195	+	356	86357856	gcvT	RHE_CH02241	-	glycine cleavage system aminomethyltransferase T
2188	 58.40	-1	2342218..2342580	+	120	86357857	gcvH	RHE_CH02242	-	glycine cleavage system protein H
2189	 64.15	0	2342580..2345444	+	954	86357858	gcvP	RHE_CH02243	-	glycine dehydrogenase
2190	 63.02	0	2345651..2346691	+	346	86357859	lysM	RHE_CH02244	-	cell-wall lytic enzyme
2191	 61.44	0	2346829..2347134	+	101	86357860	-	RHE_CH02245	-	flagellar basal body rod protein
2192	 56.73	-1	2347236..2347859	+	207	86357861	-	RHE_CH02246	-	hypothetical protein
2193	 64.12	0	2347942..2348334	-	130	86357862	-	RHE_CH02247	-	hypothetical protein
2194	 61.94	0	2348427..2348807	-	126	86357863	-	RHE_CH02248	-	hypothetical protein
2195	 61.67	0	2348820..2350061	-	413	86357864	-	RHE_CH02249	-	putative selenocysteine lyase protein
2196	 64.31	0	2350074..2351348	-	424	86357865	sufD	RHE_CH02250	-	ABC transporter involved in Fe-S cluster assembly, permease protein
2197	 60.58	0	2351373..2352128	-	251	86357866	sufC	RHE_CH02251	-	ABC transporter involved in Fe-S cluster assembly, ATP-binding protein
2198	 48.83	-2	2352233..2352574	-	113	86357867	-	RHE_CH02252	-	putative endonuclease protein
2199	 59.39	0	2352633..2354102	-	489	86357868	sufB	RHE_CH02253	-	cysteine desulfurase activator complex subunit SufB
2200	 65.57	+1	2354295..2355389	-	364	86357869	nifSch	RHE_CH02254	-	pyridoxal-phosphate-dependent aminotransferase protein (nitrogenase cofactor synthesis protein)
2201	 60.91	0	2355679..2356356	+	225	86357870	-	RHE_CH02255	-	putative alpha/beta hydrolase protein
2202	 63.02	0	2356390..2356965	-	191	86357871	-	RHE_CH02256	-	putative acetyltransferase protein
2203	 65.41	+1	2356922..2358034	-	370	86357872	anmK	RHE_CH02257	-	anhydro-N-acetylmuramic acid kinase
2204	 62.13	0	2358166..2359422	+	418	86357873	tyrS	RHE_CH02258	-	tyrosyl-tRNA synthetase
2205	 61.35	0	2359487..2359768	-	93	86357874	-	RHE_CH02259	-	hypothetical protein
2206	 59.45	0	2359961..2361622	+	553	86357875	-	RHE_CH02260	-	putative trehalose synthase (glycosyl hydrolase) protein
2207	 62.43	0	2361635..2365033	-	1132	86357876	-	RHE_CH02261	-	hypothetical protein
2208	 60.34	0	2365159..2365632	+	157	86357877	bcp	RHE_CH02262	-	bacterioferritin comigratory protein
2209	 64.86	+1	2365629..2366456	+	275	86357878	-	RHE_CH02263	-	hypothetical protein
2210	 63.65	0	2366648..2367874	+	408	86357879	-	RHE_CH02264	-	metalloendopeptidase protein
2211	 61.81	0	2367966..2369549	+	527	86357880	rhlE1	RHE_CH02265	-	ATP dependent RNA helicase protein
2212	 62.57	0	2369641..2370006	+	121	86357881	-	RHE_CH02266	-	MutT/NUDIX family hydrolase
2213	 60.94	0	2369976..2370272	-	98	86357882	-	RHE_CH02267	-	putative regulator protein of competence-specific genes
2214	 59.45	0	2370324..2370905	-	193	86357883	-	RHE_CH02268	-	4-hydroxyphenylacetate 3-monooxygenase small chain protein
2215	 66.11	+1	2371104..2372186	+	360	86357884	-	RHE_CH02269	-	putative amino acid ABC transporter, substrate-binding protein
2216	 63.27	0	2372252..2372929	+	225	86357885	rpe	RHE_CH02270	-	D-ribulose-5 phosphate 3-epimerase protein
2217	 63.36	0	2372926..2373651	+	241	86357886	-	RHE_CH02271	-	hypothetical protein
2218	 61.43	0	2373690..2374166	+	158	86357887	-	RHE_CH02272	-	hypothetical protein
2219	 63.76	0	2374294..2375601	+	435	86357888	purB	RHE_CH02273	-	adenylosuccinate lyase
2220	 57.71	-1	2376114..2376593	-	159	86357889	-	RHE_CH02274	-	hypothetical protein
2221	 62.19	0	2376699..2377502	-	267	86357890	-	RHE_CH02275	-	hypothetical protein
2222	 63.08	0	2377675..2378232	+	185	86357891	-	RHE_CH02276	-	hypothetical protein
2223	 62.75	0	2378324..2380618	+	764	86357892	-	RHE_CH02277	-	putative sensory box/GGDEF family protein
2224	 58.30	-1	2380890..2381654	+	254	86357893	purC1	RHE_CH02278	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
2225	 60.08	0	2381670..2381912	+	80	86357894	purS	RHE_CH02279	-	phosphoribosylformylglycinamidine synthase subunit PurS
2226	 57.17	-1	2382000..2382515	+	171	86357895	kptA	RHE_CH02280	-	RNA 2`-phosphotransferase protein
2227	 61.90	0	2382512..2383183	+	223	86357896	purQ	RHE_CH02281	-	phosphoribosylformylglycinamidine synthase subunit I
2228	 65.41	+1	2383272..2383670	+	132	86357897	-	RHE_CH02282	-	hypothetical protein
2229	 60.00	0	2383692..2383946	-	84	86357898	-	RHE_CH02283	-	hypothetical protein
2230	 63.99	0	2384028..2385446	+	472	86357899	-	RHE_CH02284	-	GntR family transcriptional regulator
2231	 61.31	0	2385569..2386147	+	192	86357900	-	RHE_CH02285	-	hypothetical protein
2232	 63.89	0	2386319..2388550	+	743	86357901	purL	RHE_CH02286	-	phosphoribosylformylglycinamidine synthase II
2233	 63.25	0	2388570..2388803	+	77	86357902	-	RHE_CH02287	-	stress-induced morphogen protein
2234	 57.61	-1	2388939..2389976	-	345	86357903	-	RHE_CH02288	-	oxidoreductase protein
2235	 56.67	-1	2389980..2390429	-	149	86357904	aroQ2	RHE_CH02289	-	3-dehydroquinate dehydratase
2236	 63.96	0	2390461..2390829	-	122	86357905	-	RHE_CH02290	-	putative 5-carboxymethyl-2-hydroxymuconate delta isomerase protein
2237	 60.98	0	2390845..2391705	-	286	162329638	aroEch2	RHE_CH02291	-	shikimate 5-dehydrogenase
2238	 58.40	-1	2391724..2392497	-	257	86357907	-	RHE_CH02292	-	amino acid ABC transporter ATP-binding protein
2239	 60.36	0	2392505..2393329	-	274	86357908	-	RHE_CH02293	-	amino acid ABC transporter substrate-binding protein
2240	 58.37	-1	2393374..2394024	-	216	86357909	-	RHE_CH02294	-	amino acid ABC transporter permease
2241	 55.31	-1	2394034..2394702	-	222	86357910	-	RHE_CH02295	-	amino acid ABC transporter permease
61.61	MEAN

3.19	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.