IslandPathversion 1.0

IslandPath Analysis: Rhizobium etli CFN 42



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 61.61 STD DEV: 3.19
Rhizobium etli CFN 42, complete genome - 1..4381608
4035 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2117	 61.97	0	2273495..2274388	-	297	86357786	-	RHE_CH02169	-	putative transglutaminase-like protein
2118	 56.55	-1	2274886..2275152	-	88	86357787	-	RHE_CH02170	-	hypothetical protein
2119	 58.82	0	2275611..2275865	+	84	86357788	-	RHE_CH02171	-	hypothetical protein
2120	 61.35	0	2275945..2276226	-	93	86357789	-	RHE_CH02172	-	hypothetical protein
2121	 62.55	0	2276398..2278338	+	646	86357790	ppiD1	RHE_CH02173	-	peptidyl prolyl cis-trans isomerase D signal peptide protein
2122	 65.19	+1	2278347..2279363	+	338	86357791	trpD	RHE_CH02174	-	anthranilate phosphoribosyltransferase
2123	 63.22	0	2279373..2280185	+	270	86357792	trpC	RHE_CH02175	-	indole-3-glycerol-phosphate synthase
2124	 64.19	0	2280241..2280684	+	147	86357793	moaC	RHE_CH02176	-	molybdenum cofactor biosynthesis protein
2125	 66.50	+1	2280681..2281904	+	407	86357794	moeA	RHE_CH02177	-	molybdopterin biosynthesis protein
2126	 65.91	+1	2281923..2282582	-	219	86357795	-	RHE_CH02178	-	putative SAM-dependent methyltransferease protein
2127	 65.44	+1	2282640..2284595	-	651	86357796	deaD	RHE_CH02179	-	ATP-dependent RNA helicase protein
2128	 67.69	+1	2284694..2286550	-	618	86357797	-	RHE_CH02180	-	putative adenylate cyclase protein
2129	 68.56	+2	2286547..2287074	-	175	86357798	-	RHE_CH02181	-	hypothetical protein
2130	 64.41	0	2287199..2288530	-	443	86357799	cisZ	RHE_CH02182	-	citrate synthase protein
2131	 61.88	0	2289575..2291203	-	542	86357800	pyrG	RHE_CH02184	-	CTP synthetase
2132	 68.30	+2	2291347..2291835	-	162	86357801	secG	RHE_CH02185	-	preprotein translocase subunit SecG
2133	 66.26	+1	2291954..2292682	-	242	86357802	tpiAch	RHE_CH02186	-	triosephosphate isomerase protein
2134	 61.00	0	2292852..2293751	-	299	86357803	-	RHE_CH02187	-	hypothetical protein
2135	 64.09	0	2294075..2296057	+	660	86357804	parE	RHE_CH02188	-	DNA topoisomerase IV subunit B
2136	 62.99	0	2296520..2297716	+	398	86357805	-	RHE_CH02189	-	putative permease protein
2137	 62.75	0	2297734..2298192	-	152	86357806	-	RHE_CH02190	-	acetyltransferase protein
2138	 61.90	0	2298323..2298742	+	139	86357807	-	RHE_CH02191	-	hypothetical protein
2139	 66.37	+1	2298739..2299740	-	333	86357808	-	RHE_CH02192	-	hypothetical protein
2140	 61.49	0	2299975..2300592	-	205	86357809	-	RHE_CH02193	-	hypothetical protein
2141	 62.39	0	2300592..2301176	-	194	86357810	-	RHE_CH02194	-	putative nitroreductase protein
2142	 64.22	0	2301290..2302393	+	367	86357811	-	RHE_CH02195	-	hypothetical protein
2143	 60.54	0	2302639..2304645	-	668	86357812	thrS	RHE_CH02196	-	threonyl-tRNA synthetase
2144	 61.36	0	2304766..2305293	-	175	86357813	-	RHE_CH02197	-	hypothetical protein
2145	 60.48	0	2305290..2305709	-	139	86357814	-	RHE_CH02198	-	hypothetical protein
2146	 64.94	+1	2305715..2306119	-	134	86357815	-	RHE_CH02199	-	hypothetical protein
2147	 61.07	0	2306125..2306571	-	148	86357816	nifUch2	RHE_CH02200	-	nitrogen fixation protein
2148	 60.65	0	2306882..2307496	+	204	86357817	folE	RHE_CH02201	-	GTP cyclohydrolase I
2149	 60.49	0	2307522..2307974	+	150	86357818	hisI	RHE_CH02202	-	phosphoribosyl-AMP cyclohydrolase
2150	 63.97	0	2308089..2309051	+	320	86357819	-	RHE_CH02203	-	putative phosphoesterase protein
2151	 59.54	0	2309102..2309536	-	144	86357820	-	RHE_CH02204	-	putative inosine-5`-monophosphate dehydrogenase protein
2152	 63.88	0	2309632..2310420	-	262	86357821	-	RHE_CH02205	-	hypothetical protein
2153	 62.48	0	2310679..2311323	+	214	86357822	-	RHE_CH02206	-	hypothetical protein
2154	 62.76	0	2311572..2312057	+	161	86357823	-	RHE_CH02207	-	hypothetical protein
2155	 62.97	0	2312417..2313391	+	324	86357824	pipch2	RHE_CH02208	-	proline iminopeptidase protein
2156	 59.90	0	2313743..2314348	+	201	86357825	-	RHE_CH02209	-	hypothetical protein
2157	 61.45	0	2314600..2315346	+	248	86357826	-	RHE_CH02210	-	hypothetical protein
2158	 65.53	+1	2315465..2317042	+	525	86357827	-	RHE_CH02211	-	serine-type D-Ala-D-Ala carboxypeptidase protein
2159	 63.41	0	2317155..2317430	+	91	86357828	-	RHE_CH02212	-	hypothetical protein
2160	 62.33	0	2317475..2317912	-	145	86357829	-	RHE_CH02213	-	hypothetical protein
2161	 65.10	+1	2317973..2319376	-	467	86357830	sda	RHE_CH02214	-	L-serine dehydratase protein
2162	 59.64	0	2319781..2320548	+	255	86357831	-	RHE_CH02215	-	hypothetical protein
2163	 61.01	0	2320545..2321534	+	329	86357832	-	RHE_CH02216	-	hypothetical protein
2164	 61.32	0	2321563..2321955	-	130	86357833	-	RHE_CH02217	-	MerR family transcriptional regulator
2165	 62.40	0	2322021..2323427	-	468	86357834	-	RHE_CH02218	-	magnesium transporter protein
2166	 63.64	0	2323668..2324162	+	164	86357835	def2	RHE_CH02219	-	peptide deformylase
2167	 59.65	0	2324233..2324745	+	170	86357836	-	RHE_CH02220	-	hypothetical protein
2168	 64.23	0	2325041..2325409	+	122	86357837	-	RHE_CH02221	-	hypothetical protein
2169	 64.86	+1	2325858..2326577	+	239	86357838	lipB	RHE_CH02223	-	lipoyltransferase
2170	 58.85	0	2326657..2327577	+	306	86357839	-	RHE_CH02224	-	permease protein
2171	 61.42	0	2327676..2328380	+	234	86357840	-	RHE_CH02225	-	hypothetical protein
2172	 63.38	0	2328489..2330498	+	669	86357841	pccA	RHE_CH02226	-	propionyl-CoA carboxylase alpha chain protein
2173	 64.45	0	2330574..2331701	+	375	86357842	adhCch	RHE_CH02227	-	formaldehyde dehydrogenase (glutathione)/alcohol dehydrogenase protein
2174	 60.10	0	2331779..2332174	+	131	86357843	-	RHE_CH02228	-	putative acetyltransferase protein
2175	 64.53	0	2332185..2332652	+	155	86357844	-	RHE_CH02229	-	hypothetical protein
2176	 62.54	0	2332817..2333131	+	104	86357845	sugE	RHE_CH02230	-	chaperone-like transmembrane protein
2177	 58.52	0	2333181..2333573	-	130	86357846	-	RHE_CH02231	-	hypothetical protein
2178	 61.45	0	2333691..2335223	-	510	86357847	pccB	RHE_CH02232	-	propionyl-CoA carboxylase beta chain protein
2179	 63.40	0	2335260..2335718	-	152	86357848	-	RHE_CH02233	-	hypothetical protein
2180	 65.27	+1	2335786..2336571	-	261	86357849	-	RHE_CH02234	-	hypothetical protein
2181	 60.70	0	2336581..2337234	-	217	86357850	gph1	RHE_CH02235	-	phosphoglycolate phosphatase protein
2182	 63.52	0	2337231..2338184	-	317	86357851	rluC	RHE_CH02236	-	pseudouridylate synthase, ribosomal large subunit C protein
2183	 62.96	0	2338317..2338694	-	125	86357852	-	RHE_CH02237	-	CrcB family integral membrane protein
2184	 64.17	0	2338761..2339081	+	106	86357853	-	RHE_CH02238	-	hypothetical protein
2185	 62.36	0	2339154..2340197	-	347	86357854	-	RHE_CH02239	-	hypothetical protein
2186	 62.73	0	2340270..2340650	-	126	86357855	-	RHE_CH02240	-	hypothetical protein
2187	 65.17	+1	2341125..2342195	+	356	86357856	gcvT	RHE_CH02241	-	glycine cleavage system aminomethyltransferase T
2188	 58.40	-1	2342218..2342580	+	120	86357857	gcvH	RHE_CH02242	-	glycine cleavage system protein H
2189	 64.15	0	2342580..2345444	+	954	86357858	gcvP	RHE_CH02243	-	glycine dehydrogenase
2190	 63.02	0	2345651..2346691	+	346	86357859	lysM	RHE_CH02244	-	cell-wall lytic enzyme
2191	 61.44	0	2346829..2347134	+	101	86357860	-	RHE_CH02245	-	flagellar basal body rod protein
2192	 56.73	-1	2347236..2347859	+	207	86357861	-	RHE_CH02246	-	hypothetical protein
2193	 64.12	0	2347942..2348334	-	130	86357862	-	RHE_CH02247	-	hypothetical protein
2194	 61.94	0	2348427..2348807	-	126	86357863	-	RHE_CH02248	-	hypothetical protein
2195	 61.67	0	2348820..2350061	-	413	86357864	-	RHE_CH02249	-	putative selenocysteine lyase protein
2196	 64.31	0	2350074..2351348	-	424	86357865	sufD	RHE_CH02250	-	ABC transporter involved in Fe-S cluster assembly, permease protein
2197	 60.58	0	2351373..2352128	-	251	86357866	sufC	RHE_CH02251	-	ABC transporter involved in Fe-S cluster assembly, ATP-binding protein
2198	 48.83	-2	2352233..2352574	-	113	86357867	-	RHE_CH02252	-	putative endonuclease protein
2199	 59.39	0	2352633..2354102	-	489	86357868	sufB	RHE_CH02253	-	cysteine desulfurase activator complex subunit SufB
2200	 65.57	+1	2354295..2355389	-	364	86357869	nifSch	RHE_CH02254	-	pyridoxal-phosphate-dependent aminotransferase protein (nitrogenase cofactor synthesis protein)
2201	 60.91	0	2355679..2356356	+	225	86357870	-	RHE_CH02255	-	putative alpha/beta hydrolase protein
2202	 63.02	0	2356390..2356965	-	191	86357871	-	RHE_CH02256	-	putative acetyltransferase protein
2203	 65.41	+1	2356922..2358034	-	370	86357872	anmK	RHE_CH02257	-	anhydro-N-acetylmuramic acid kinase
2204	 62.13	0	2358166..2359422	+	418	86357873	tyrS	RHE_CH02258	-	tyrosyl-tRNA synthetase
2205	 61.35	0	2359487..2359768	-	93	86357874	-	RHE_CH02259	-	hypothetical protein
2206	 59.45	0	2359961..2361622	+	553	86357875	-	RHE_CH02260	-	putative trehalose synthase (glycosyl hydrolase) protein
2207	 62.43	0	2361635..2365033	-	1132	86357876	-	RHE_CH02261	-	hypothetical protein
2208	 60.34	0	2365159..2365632	+	157	86357877	bcp	RHE_CH02262	-	bacterioferritin comigratory protein
2209	 64.86	+1	2365629..2366456	+	275	86357878	-	RHE_CH02263	-	hypothetical protein
2210	 63.65	0	2366648..2367874	+	408	86357879	-	RHE_CH02264	-	metalloendopeptidase protein
2211	 61.81	0	2367966..2369549	+	527	86357880	rhlE1	RHE_CH02265	-	ATP dependent RNA helicase protein
2212	 62.57	0	2369641..2370006	+	121	86357881	-	RHE_CH02266	-	MutT/NUDIX family hydrolase
2213	 60.94	0	2369976..2370272	-	98	86357882	-	RHE_CH02267	-	putative regulator protein of competence-specific genes
2214	 59.45	0	2370324..2370905	-	193	86357883	-	RHE_CH02268	-	4-hydroxyphenylacetate 3-monooxygenase small chain protein
2215	 66.11	+1	2371104..2372186	+	360	86357884	-	RHE_CH02269	-	putative amino acid ABC transporter, substrate-binding protein
2216	 63.27	0	2372252..2372929	+	225	86357885	rpe	RHE_CH02270	-	D-ribulose-5 phosphate 3-epimerase protein
61.61	MEAN

3.19	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.