IslandPathversion 1.0

IslandPath Analysis: Rhizobium etli CFN 42



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 61.61 STD DEV: 3.19
Rhizobium etli CFN 42, complete genome - 1..4381608
4035 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2087	 60.35	0	2237514..2238194	-	226	86357756	-	RHE_CH02137	-	hypothetical protein
2088	 63.62	0	2238264..2241509	-	1081	86357757	-	RHE_CH02138	-	putative adenylate/guanylate cyclase protein
2089	 57.96	-1	2241675..2242478	-	267	86357758	occPch	RHE_CH02139	-	octopine ABC transporter, ATP-binding protein
2090	 58.66	0	2242491..2243189	-	232	86357759	occMch	RHE_CH02140	-	octopine ABC transporter, permease protein
2091	 59.50	0	2243189..2243914	-	241	86357760	occQch	RHE_CH02141	-	octopine ABC transporter, permease protein
2092	 60.74	0	2243950..2244675	-	241	86357761	-	RHE_CH02142	-	transcriptional regulator protein
2093	 62.30	0	2244890..2245873	+	327	86357762	speB2	RHE_CH02143	-	agmatinase protein
2094	 58.72	0	2245949..2246791	+	280	86357763	occT	RHE_CH02144	-	octopine ABC transporter, substrate-binding protein
2095	 58.28	-1	2246914..2248296	+	460	86357764	-	RHE_CH02145	-	aminotransferase
2096	 60.58	0	2248314..2249906	+	530	86357765	ggt1	RHE_CH02146	-	gamma-glutamyltranspeptidase protein
2097	 60.88	0	2249924..2251357	+	477	86357766	-	RHE_CH02147	-	putative aldehyde dehydrogenase protein
2098	 58.36	-1	2251363..2253624	-	753	86357767	-	RHE_CH02148	-	putative sensory box/GGDEF family protein
2099	 49.80	-2	2255187..2255696	-	169	86357768	aacC2	RHE_CH02150	-	aminoglycoside N6`-acetyltransferase protein
2100	 59.00	0	2255987..2258137	-	716	86357769	-	RHE_CH02151	-	putative mechanosensitive ion channel protein
2101	 61.68	0	2258471..2258851	-	126	86357770	-	RHE_CH02152	-	hypothetical protein
2102	 60.73	0	2258910..2259701	-	263	86357771	-	RHE_CH02153	-	hypothetical protein
2103	 59.57	0	2259665..2260453	+	262	86357772	-	RHE_CH02154	-	TerC family transporter
2104	 58.73	0	2260537..2261355	-	272	86357773	-	RHE_CH02155	-	metal-dependent hydrolase protein
2105	 60.99	0	2261359..2262045	-	228	86357774	-	RHE_CH02156	-	TatD family deoxyribonuclease
2106	 61.57	0	2262146..2263696	-	516	86357775	metS	RHE_CH02157	-	methionyl-tRNA synthetase
2107	 63.12	0	2263930..2264718	+	262	86357776	-	RHE_CH02158	-	hypothetical protein
2108	 63.45	0	2264729..2265754	-	341	86357777	holB	RHE_CH02159	-	DNA polymerase III subunit delta'
2109	 64.14	0	2265747..2266457	-	236	86357778	tmk	RHE_CH02160	-	thymidylate kinase protein
2110	 62.79	0	2266643..2267725	-	360	86357779	dac	RHE_CH02161	-	D-alanyl-D-alanine carboxypeptidase protein
2111	 62.78	0	2267907..2269013	-	368	86357780	rlpA	RHE_CH02162	-	rare lipoprotein A precursor protein
2112	 55.35	-1	2269506..2270327	+	273	86357781	rapB1	RHE_CH02163	-	autoaggregation protein (adhering protein)
2113	 62.36	0	2270894..2271589	+	231	86357782	-	RHE_CH02165	-	TetR family transcriptional regulator
2114	 59.41	0	2271737..2272108	+	123	86357783	-	RHE_CH02166	-	hypothetical protein
2115	 57.33	-1	2272299..2272523	+	74	86357784	phnA	RHE_CH02167	-	alkilphosphonate uptake protein
2116	 60.10	0	2272561..2273367	-	268	86357785	-	RHE_CH02168	-	putative transglutaminase-like protein
2117	 61.97	0	2273495..2274388	-	297	86357786	-	RHE_CH02169	-	putative transglutaminase-like protein
2118	 56.55	-1	2274886..2275152	-	88	86357787	-	RHE_CH02170	-	hypothetical protein
2119	 58.82	0	2275611..2275865	+	84	86357788	-	RHE_CH02171	-	hypothetical protein
2120	 61.35	0	2275945..2276226	-	93	86357789	-	RHE_CH02172	-	hypothetical protein
2121	 62.55	0	2276398..2278338	+	646	86357790	ppiD1	RHE_CH02173	-	peptidyl prolyl cis-trans isomerase D signal peptide protein
2122	 65.19	+1	2278347..2279363	+	338	86357791	trpD	RHE_CH02174	-	anthranilate phosphoribosyltransferase
2123	 63.22	0	2279373..2280185	+	270	86357792	trpC	RHE_CH02175	-	indole-3-glycerol-phosphate synthase
2124	 64.19	0	2280241..2280684	+	147	86357793	moaC	RHE_CH02176	-	molybdenum cofactor biosynthesis protein
2125	 66.50	+1	2280681..2281904	+	407	86357794	moeA	RHE_CH02177	-	molybdopterin biosynthesis protein
2126	 65.91	+1	2281923..2282582	-	219	86357795	-	RHE_CH02178	-	putative SAM-dependent methyltransferease protein
2127	 65.44	+1	2282640..2284595	-	651	86357796	deaD	RHE_CH02179	-	ATP-dependent RNA helicase protein
2128	 67.69	+1	2284694..2286550	-	618	86357797	-	RHE_CH02180	-	putative adenylate cyclase protein
2129	 68.56	+2	2286547..2287074	-	175	86357798	-	RHE_CH02181	-	hypothetical protein
2130	 64.41	0	2287199..2288530	-	443	86357799	cisZ	RHE_CH02182	-	citrate synthase protein
2131	 61.88	0	2289575..2291203	-	542	86357800	pyrG	RHE_CH02184	-	CTP synthetase
2132	 68.30	+2	2291347..2291835	-	162	86357801	secG	RHE_CH02185	-	preprotein translocase subunit SecG
2133	 66.26	+1	2291954..2292682	-	242	86357802	tpiAch	RHE_CH02186	-	triosephosphate isomerase protein
2134	 61.00	0	2292852..2293751	-	299	86357803	-	RHE_CH02187	-	hypothetical protein
2135	 64.09	0	2294075..2296057	+	660	86357804	parE	RHE_CH02188	-	DNA topoisomerase IV subunit B
2136	 62.99	0	2296520..2297716	+	398	86357805	-	RHE_CH02189	-	putative permease protein
2137	 62.75	0	2297734..2298192	-	152	86357806	-	RHE_CH02190	-	acetyltransferase protein
2138	 61.90	0	2298323..2298742	+	139	86357807	-	RHE_CH02191	-	hypothetical protein
2139	 66.37	+1	2298739..2299740	-	333	86357808	-	RHE_CH02192	-	hypothetical protein
2140	 61.49	0	2299975..2300592	-	205	86357809	-	RHE_CH02193	-	hypothetical protein
2141	 62.39	0	2300592..2301176	-	194	86357810	-	RHE_CH02194	-	putative nitroreductase protein
2142	 64.22	0	2301290..2302393	+	367	86357811	-	RHE_CH02195	-	hypothetical protein
2143	 60.54	0	2302639..2304645	-	668	86357812	thrS	RHE_CH02196	-	threonyl-tRNA synthetase
2144	 61.36	0	2304766..2305293	-	175	86357813	-	RHE_CH02197	-	hypothetical protein
2145	 60.48	0	2305290..2305709	-	139	86357814	-	RHE_CH02198	-	hypothetical protein
2146	 64.94	+1	2305715..2306119	-	134	86357815	-	RHE_CH02199	-	hypothetical protein
2147	 61.07	0	2306125..2306571	-	148	86357816	nifUch2	RHE_CH02200	-	nitrogen fixation protein
2148	 60.65	0	2306882..2307496	+	204	86357817	folE	RHE_CH02201	-	GTP cyclohydrolase I
2149	 60.49	0	2307522..2307974	+	150	86357818	hisI	RHE_CH02202	-	phosphoribosyl-AMP cyclohydrolase
2150	 63.97	0	2308089..2309051	+	320	86357819	-	RHE_CH02203	-	putative phosphoesterase protein
2151	 59.54	0	2309102..2309536	-	144	86357820	-	RHE_CH02204	-	putative inosine-5`-monophosphate dehydrogenase protein
2152	 63.88	0	2309632..2310420	-	262	86357821	-	RHE_CH02205	-	hypothetical protein
2153	 62.48	0	2310679..2311323	+	214	86357822	-	RHE_CH02206	-	hypothetical protein
2154	 62.76	0	2311572..2312057	+	161	86357823	-	RHE_CH02207	-	hypothetical protein
2155	 62.97	0	2312417..2313391	+	324	86357824	pipch2	RHE_CH02208	-	proline iminopeptidase protein
2156	 59.90	0	2313743..2314348	+	201	86357825	-	RHE_CH02209	-	hypothetical protein
2157	 61.45	0	2314600..2315346	+	248	86357826	-	RHE_CH02210	-	hypothetical protein
2158	 65.53	+1	2315465..2317042	+	525	86357827	-	RHE_CH02211	-	serine-type D-Ala-D-Ala carboxypeptidase protein
2159	 63.41	0	2317155..2317430	+	91	86357828	-	RHE_CH02212	-	hypothetical protein
2160	 62.33	0	2317475..2317912	-	145	86357829	-	RHE_CH02213	-	hypothetical protein
2161	 65.10	+1	2317973..2319376	-	467	86357830	sda	RHE_CH02214	-	L-serine dehydratase protein
2162	 59.64	0	2319781..2320548	+	255	86357831	-	RHE_CH02215	-	hypothetical protein
2163	 61.01	0	2320545..2321534	+	329	86357832	-	RHE_CH02216	-	hypothetical protein
2164	 61.32	0	2321563..2321955	-	130	86357833	-	RHE_CH02217	-	MerR family transcriptional regulator
2165	 62.40	0	2322021..2323427	-	468	86357834	-	RHE_CH02218	-	magnesium transporter protein
2166	 63.64	0	2323668..2324162	+	164	86357835	def2	RHE_CH02219	-	peptide deformylase
2167	 59.65	0	2324233..2324745	+	170	86357836	-	RHE_CH02220	-	hypothetical protein
2168	 64.23	0	2325041..2325409	+	122	86357837	-	RHE_CH02221	-	hypothetical protein
2169	 64.86	+1	2325858..2326577	+	239	86357838	lipB	RHE_CH02223	-	lipoyltransferase
2170	 58.85	0	2326657..2327577	+	306	86357839	-	RHE_CH02224	-	permease protein
2171	 61.42	0	2327676..2328380	+	234	86357840	-	RHE_CH02225	-	hypothetical protein
2172	 63.38	0	2328489..2330498	+	669	86357841	pccA	RHE_CH02226	-	propionyl-CoA carboxylase alpha chain protein
2173	 64.45	0	2330574..2331701	+	375	86357842	adhCch	RHE_CH02227	-	formaldehyde dehydrogenase (glutathione)/alcohol dehydrogenase protein
2174	 60.10	0	2331779..2332174	+	131	86357843	-	RHE_CH02228	-	putative acetyltransferase protein
2175	 64.53	0	2332185..2332652	+	155	86357844	-	RHE_CH02229	-	hypothetical protein
2176	 62.54	0	2332817..2333131	+	104	86357845	sugE	RHE_CH02230	-	chaperone-like transmembrane protein
2177	 58.52	0	2333181..2333573	-	130	86357846	-	RHE_CH02231	-	hypothetical protein
2178	 61.45	0	2333691..2335223	-	510	86357847	pccB	RHE_CH02232	-	propionyl-CoA carboxylase beta chain protein
2179	 63.40	0	2335260..2335718	-	152	86357848	-	RHE_CH02233	-	hypothetical protein
2180	 65.27	+1	2335786..2336571	-	261	86357849	-	RHE_CH02234	-	hypothetical protein
2181	 60.70	0	2336581..2337234	-	217	86357850	gph1	RHE_CH02235	-	phosphoglycolate phosphatase protein
2182	 63.52	0	2337231..2338184	-	317	86357851	rluC	RHE_CH02236	-	pseudouridylate synthase, ribosomal large subunit C protein
2183	 62.96	0	2338317..2338694	-	125	86357852	-	RHE_CH02237	-	CrcB family integral membrane protein
2184	 64.17	0	2338761..2339081	+	106	86357853	-	RHE_CH02238	-	hypothetical protein
2185	 62.36	0	2339154..2340197	-	347	86357854	-	RHE_CH02239	-	hypothetical protein
2186	 62.73	0	2340270..2340650	-	126	86357855	-	RHE_CH02240	-	hypothetical protein
61.61	MEAN

3.19	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.