IslandPath Analysis: Rhizobium etli CFN 42



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 61.61   STD DEV: 3.19
Rhizobium etli CFN 42, complete genome - 1..4381608
4035 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2009	 63.85	0	2151779..2152489	-	236	86357678	-	RHE_CH02059	-	GntR family transcriptional regulator
2010	 60.34	0	2152621..2154216	+	531	86357679	dppAch2	RHE_CH02060	-	dipeptide ABC transporter, substrate-binding protein
2011	 61.52	0	2154237..2155265	+	342	86357680	dppBch2	RHE_CH02061	-	dipeptide ABC transporter, permease protein
2012	 63.34	0	2155262..2156164	+	300	86357681	dppCch2	RHE_CH02062	-	dipeptide ABC transporter, permease protein
2013	 64.54	0	2156151..2156996	+	281	86357682	dppDch2	RHE_CH02063	-	dipeptide ABC transporter, ATP-binding protein
2014	 62.90	0	2156993..2157736	+	247	86357683	dppFch2	RHE_CH02064	-	dipeptide ABC transporter, ATP-binding protein
2015	 59.26	0	2157723..2158262	-	179	86357684	-	RHE_CH02065	-	putative oxidoreductase protein
2016	 65.91	+1	2158259..2159314	-	351	86357685	-	RHE_CH02066	-	LacI family transcription regulator
2017	 64.68	0	2159504..2162026	+	840	86357686	-	RHE_CH02067	-	hypothetical protein
2018	 62.38	0	2162093..2163352	+	419	86357687	-	RHE_CH02068	-	sugar ABC transporter, substrate-binding protein
2019	 62.39	0	2163466..2164401	+	311	86357688	-	RHE_CH02069	-	sugar ABC transporter, permease protein
2020	 61.43	0	2164398..2165447	+	349	86357689	-	RHE_CH02070	-	sugar ABC transporter, permease protein
2021	 65.00	+1	2165466..2166545	+	359	86357690	-	RHE_CH02071	-	sugar ABC transporter, ATP-binding protein
2022	 59.04	0	2166607..2166855	-	82	86357691	-	RHE_CH02072	-	hypothetical protein
2023	 63.83	0	2167153..2167752	+	199	86357692	-	RHE_CH02073	-	hypothetical protein
2024	 63.42	0	2167912..2169204	+	430	86357693	-	RHE_CH02074	-	HlyD family protein secretion protein
2025	 64.30	0	2169218..2169934	+	238	86357694	-	RHE_CH02075	-	putative ABC transporter, ATP-binding protein
2026	 65.50	+1	2169924..2171126	+	400	86357695	-	RHE_CH02076	-	putative ABC transporter, permease protein
2027	 65.53	+1	2171429..2172043	+	204	86357696	-	RHE_CH02077	-	GntR family transcriptional regulator
2028	 61.99	0	2172092..2172904	-	270	86357697	fpr	RHE_CH02078	-	ferredoxin-NADP+ reductase protein
2029	 57.34	-1	2173250..2173978	+	242	86357698	pcs	RHE_CH02079	-	phosphatidylcholine synthase protein
2030	 60.14	0	2173989..2174969	+	326	86357699	qor	RHE_CH02080	-	quinone oxidoreductase protein
2031	 64.31	0	2175009..2176577	+	522	86357700	-	RHE_CH02081	-	sugar ABC transporter, ATP-binding protein
2032	 62.52	0	2176567..2177652	+	361	86357701	-	RHE_CH02082	-	sugar ABC transporter, permease protein
2033	 62.21	0	2177649..2178569	+	306	86357702	-	RHE_CH02083	-	sugar ABC transporter, permease protein
2034	 61.84	0	2178622..2179698	+	358	86357703	-	RHE_CH02084	-	putative ABC transporter, substrate-binding protein
2035	 58.57	0	2179844..2180806	+	320	86357704	-	RHE_CH02085	-	sugar ABC transporter, substrate-binding protein
2036	 62.20	0	2180927..2182450	+	507	86357705	-	RHE_CH02086	-	sugar ABC transporter, ATP-binding protein
2037	 60.30	0	2182447..2183451	+	334	86357706	-	RHE_CH02087	-	sugar ABC transporter, permease protein
2038	 58.31	-1	2183457..2184425	+	322	86357707	-	RHE_CH02088	-	inner membrane ABC transporter permease protein YjfF
2039	 62.89	0	2184503..2185216	+	237	86357708	-	RHE_CH02089	-	GntR family transcriptional regulator
2040	 64.98	+1	2185300..2186661	+	453	86357709	glmU	RHE_CH02090	-	UDP-N-acetylglucosamine pyrophosphorylase protein
2041	 61.90	0	2186771..2188597	+	608	86357710	glmS1	RHE_CH02091	-	D-fructose-6-phosphate amidotransferase
2042	 59.18	0	2188732..2189439	+	235	86357711	-	RHE_CH02092	-	hypothetical protein
2043	 64.25	0	2189436..2191541	-	701	86357712	recG	RHE_CH02093	-	ATP-dependent DNA helicase protein
2044	 60.42	0	2191556..2191939	+	127	86357713	-	RHE_CH02094	-	hypothetical protein
2045	 63.98	0	2191936..2195439	+	1167	86357714	mfd	RHE_CH02095	-	transcription-repair coupling factor (TRCF) protein
2046	 61.54	0	2195456..2195923	+	155	86357715	-	RHE_CH02096	-	putative redox protein
2047	 58.99	0	2196079..2196495	-	138	86357716	-	RHE_CH02097	-	hypothetical protein
2048	 61.46	0	2196504..2197175	-	223	86357717	-	RHE_CH02098	-	putative dithiol-disulfide isomerase protein (involved in polyketide biosynthesis)
2049	 58.07	-1	2197236..2199038	-	600	86357718	-	RHE_CH02099	-	peptide ABC transporter, substrate-binding protein
2050	 61.01	0	2199326..2199979	+	217	86357719	-	RHE_CH02100	-	putative signal peptide protein
2051	 54.24	-2	2200232..2200561	-	109	86357720	-	RHE_CH02101	-	hypothetical protein
2052	 59.43	0	2200720..2202129	-	469	86357721	glnA2	RHE_CH02102	-	glutamine synthetase protein
2053	 58.11	-1	2202208..2202546	-	112	86357722	glnB	RHE_CH02103	-	nitrogen regulatory protein P-II
2054	 67.65	+1	2202932..2204362	+	476	86357723	-	RHE_CH02104	-	hypothetical protein
2055	 59.48	0	2204368..2205174	-	268	86357724	-	RHE_CH02105	-	hypothetical protein
2056	 61.62	0	2205199..2205654	-	151	86357725	-	RHE_CH02106	-	acetyltransferase protein
2057	 62.66	0	2205657..2208578	-	973	86357726	uvrA	RHE_CH02107	-	excinuclease ABC subunit A
2058	 62.60	0	2208863..2209378	+	171	86357727	ssb	RHE_CH02108	-	single-strand DNA-binding protein
2059	 66.20	+1	2209461..2210108	-	215	86357728	-	RHE_CH02109	-	multiple antibiotic resistance transporter protein
2060	 63.59	0	2210346..2213171	+	941	162329639	gyrA	RHE_CH02110	-	DNA gyrase subunit A
2061	 55.32	-1	2213336..2213476	-	46	86357730	-	RHE_CH02111	-	hypothetical protein
2062	 58.02	-1	2213756..2214160	-	134	86357731	-	RHE_CH02112	-	hypothetical protein
2063	 61.82	0	2214193..2214687	+	164	86357732	coaD	RHE_CH02113	-	phosphopantetheine adenylyltransferase
2064	 58.29	-1	2214714..2215286	+	190	86357733	ppiA	RHE_CH02114	-	peptidyl prolyl cis-trans isomerase A signal peptide protein
2065	 60.00	0	2215315..2215824	+	169	86357734	ppiB	RHE_CH02115	-	peptidyl prolyl cis-trans isomerase B signal peptide protein
2066	 64.27	0	2215897..2216982	+	361	86357735	queA	RHE_CH02116	-	S-adenosylmethionine:tRNA ribosyltransferase-isomerase
2067	 64.19	0	2216979..2218109	+	376	86357736	tgt	RHE_CH02117	-	queuine tRNA-ribosyltransferase
2068	 54.90	-2	2218112..2219122	-	336	86357737	-	RHE_CH02118	-	putative acetyltransferase protein
2069	 59.67	0	2219290..2219718	-	142	86357738	-	RHE_CH02119	-	hypothetical protein
2070	 68.09	+2	2219799..2221064	-	421	86357739	fabF2	RHE_CH02120	-	3-oxoacyl-(acyl carrier protein) synthase II
2071	 60.74	0	2221078..2221617	-	179	86357740	-	RHE_CH02121	-	transcriptional regulator protein
2072	 56.37	-1	2221650..2222183	-	177	86357741	-	RHE_CH02122	-	MutT/NUDIX family hydrolase
2073	 59.88	0	2222323..2223132	-	269	86357742	-	RHE_CH02123	-	inositol monophosphatase protein
2074	 62.52	0	2223163..2224224	-	353	86357743	afuC1	RHE_CH02124	-	iron(III) ABC transporter, ATP-binding protein
2075	 62.37	0	2224221..2226452	-	743	86357744	afuB1	RHE_CH02125	-	iron(III) ABC transporter, permease protein
2076	 60.72	0	2226540..2227565	-	341	86357745	afuA1	RHE_CH02126	-	iron(III) ABC transporter, substrate-binding protein
2077	 59.92	0	2227684..2228676	-	330	86357746	afuA2	RHE_CH02127	-	iron(III) ABC transporter, substrate-binding protein
2078	 62.29	0	2229059..2229652	+	197	86357747	drrA	RHE_CH02128	-	two-component response regulator protein
2079	 60.22	0	2230000..2231751	+	583	86357748	-	RHE_CH02129	-	two-component sensor histidine kinase protein
2080	 60.47	0	2231748..2232134	-	128	86357749	-	RHE_CH02130	-	hypothetical protein
2081	 62.26	0	2232290..2232607	-	105	86357750	-	RHE_CH02131	-	hypothetical protein
2082	 60.10	0	2232832..2233227	+	131	86357751	-	RHE_CH02132	-	hypothetical protein
2083	 62.41	0	2233397..2234077	-	226	86357752	-	RHE_CH02133	-	GNAT family acetyltransferase
2084	 63.41	0	2234074..2234595	-	173	86357753	-	RHE_CH02134	-	MarR family transcriptional regulator
2085	 63.87	0	2234692..2235798	-	368	86357754	-	RHE_CH02135	-	putative transporter, permease protein
2086	 63.88	0	2235967..2237475	+	502	86357755	-	RHE_CH02136	-	adenylate cyclase
2087	 60.35	0	2237514..2238194	-	226	86357756	-	RHE_CH02137	-	hypothetical protein
2088	 63.62	0	2238264..2241509	-	1081	86357757	-	RHE_CH02138	-	putative adenylate/guanylate cyclase protein
2089	 57.96	-1	2241675..2242478	-	267	86357758	occPch	RHE_CH02139	-	octopine ABC transporter, ATP-binding protein
2090	 58.66	0	2242491..2243189	-	232	86357759	occMch	RHE_CH02140	-	octopine ABC transporter, permease protein
2091	 59.50	0	2243189..2243914	-	241	86357760	occQch	RHE_CH02141	-	octopine ABC transporter, permease protein
2092	 60.74	0	2243950..2244675	-	241	86357761	-	RHE_CH02142	-	transcriptional regulator protein
2093	 62.30	0	2244890..2245873	+	327	86357762	speB2	RHE_CH02143	-	agmatinase protein
2094	 58.72	0	2245949..2246791	+	280	86357763	occT	RHE_CH02144	-	octopine ABC transporter, substrate-binding protein
2095	 58.28	-1	2246914..2248296	+	460	86357764	-	RHE_CH02145	-	aminotransferase
2096	 60.58	0	2248314..2249906	+	530	86357765	ggt1	RHE_CH02146	-	gamma-glutamyltranspeptidase protein
2097	 60.88	0	2249924..2251357	+	477	86357766	-	RHE_CH02147	-	putative aldehyde dehydrogenase protein
2098	 58.36	-1	2251363..2253624	-	753	86357767	-	RHE_CH02148	-	putative sensory box/GGDEF family protein
2099	 49.80	-2	2255187..2255696	-	169	86357768	aacC2	RHE_CH02150	-	aminoglycoside N6`-acetyltransferase protein
2100	 59.00	0	2255987..2258137	-	716	86357769	-	RHE_CH02151	-	putative mechanosensitive ion channel protein
2101	 61.68	0	2258471..2258851	-	126	86357770	-	RHE_CH02152	-	hypothetical protein
2102	 60.73	0	2258910..2259701	-	263	86357771	-	RHE_CH02153	-	hypothetical protein
2103	 59.57	0	2259665..2260453	+	262	86357772	-	RHE_CH02154	-	TerC family transporter
2104	 58.73	0	2260537..2261355	-	272	86357773	-	RHE_CH02155	-	metal-dependent hydrolase protein
2105	 60.99	0	2261359..2262045	-	228	86357774	-	RHE_CH02156	-	TatD family deoxyribonuclease
2106	 61.57	0	2262146..2263696	-	516	86357775	metS	RHE_CH02157	-	methionyl-tRNA synthetase
2107	 63.12	0	2263930..2264718	+	262	86357776	-	RHE_CH02158	-	hypothetical protein
2108	 63.45	0	2264729..2265754	-	341	86357777	holB	RHE_CH02159	-	DNA polymerase III subunit delta'
61.61	MEAN

3.19	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.