IslandPath Analysis: Rhizobium etli CFN 42



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 61.61   STD DEV: 3.19
Rhizobium etli CFN 42, complete genome - 1..4381608
4035 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1972	 59.26	0	2114226..2114711	-	161	86357641	-	RHE_CH02022	-	hypothetical protein
1973	 65.33	+1	2115079..2116572	+	497	86357642	-	RHE_CH02023	-	hypothetical protein
1974	 63.36	0	2116594..2117319	-	241	86357643	-	RHE_CH02024	-	hypothetical protein
1975	 61.98	0	2117600..2119006	+	468	86357644	cyaH	RHE_CH02025	-	adenylate/guanylate cyclase protein
1976	 55.72	-1	2119476..2120471	+	331	86357645	ocdch2	RHE_CH02026	-	ornithine cyclodeaminase protein
1977	 57.64	-1	2120607..2121581	+	324	86357646	-	RHE_CH02027	-	threonine dehydratase protein
1978	 61.75	0	2121707..2123497	-	596	86357647	-	RHE_CH02028	-	saccharide ABC transporter, ATP-binding protein
1979	 57.54	-1	2123785..2124321	-	178	86357648	-	RHE_CH02029	-	hypothetical protein
1980	 55.32	-1	2124570..2124851	+	93	86357649	-	RHE_CH02030	-	hypothetical protein
1981	 63.65	0	2125019..2125846	-	275	86357650	-	RHE_CH02031	-	putative gualylate cyclase protein
1982	 61.63	0	2126258..2126515	+	85	86357651	-	RHE_CH02032	-	hypothetical protein
1983	 64.68	0	2126599..2127051	+	150	86357652	-	RHE_CH02033	-	hypothetical protein
1984	 66.67	+1	2127089..2128603	-	504	86357653	-	RHE_CH02034	-	hypothetical protein
1985	 61.21	0	2128648..2129160	+	170	86357654	-	RHE_CH02035	-	MarR family transcriptional regulator
1986	 63.02	0	2129308..2129856	-	182	86357655	-	RHE_CH02036	-	hypothetical protein
1987	 58.58	0	2129937..2130740	-	267	86357656	-	RHE_CH02037	-	short chain dehydrogenase
1988	 63.91	0	2130794..2131192	-	132	86357657	-	RHE_CH02038	-	hypothetical protein
1989	 59.80	0	2131364..2132251	-	295	86357658	-	RHE_CH02039	-	AraC family transcriptional regulator
1990	 57.69	-1	2132754..2133143	-	129	86357659	-	RHE_CH02040	-	putative translation initiation inhibitor protein
1991	 58.08	-1	2133144..2133725	-	193	86357660	-	RHE_CH02041	-	NAD(P)H dehydrogenase protein
1992	 60.98	0	2133725..2135131	-	468	86357661	-	RHE_CH02042	-	putative FAD linked oxidase protein
1993	 63.93	0	2135133..2136446	-	437	162329640	codAch2	RHE_CH02043	-	cytosine deaminase
1994	 61.57	0	2136446..2137288	-	280	86357663	-	RHE_CH02044	-	nitrate/sulfonate/bicarbonate ABC transporter permease
1995	 60.02	0	2137285..2138112	-	275	86357664	-	RHE_CH02045	-	nitrate/sulfonate/bicarbonate ABC transporter ATP-binding protein
1996	 57.33	-1	2138179..2139195	-	338	86357665	-	RHE_CH02046	-	nitrate/sulfonate/bicarbonate ABC transporter substrate-binding protein
1997	 63.51	0	2139378..2140328	+	316	86357666	-	RHE_CH02047	-	LysR family transcriptional regulator
1998	 59.40	0	2140347..2141144	-	265	86357667	-	RHE_CH02048	-	creatininase (creatinine amidohydrolase) protein
1999	 61.67	0	2141380..2141859	+	159	86357668	-	RHE_CH02049	-	hypothetical protein
2000	 60.12	0	2142068..2142709	-	213	86357669	-	RHE_CH02050	-	hypothetical protein
2001	 63.22	0	2142728..2143828	-	366	86357670	-	RHE_CH02051	-	oxidoreductase protein
2002	 64.58	0	2143863..2145062	-	399	86357671	-	RHE_CH02052	-	ROK family transcriptional regulator
2003	 61.23	0	2145263..2146567	+	434	86357672	-	RHE_CH02053	-	sugar ABC transporter, substrate-binding protein
2004	 60.38	0	2146649..2147587	+	312	86357673	-	RHE_CH02054	-	sugar ABC transporter, permease protein
2005	 59.36	0	2147580..2148428	+	282	86357674	-	RHE_CH02055	-	sugar ABC transporter, permease protein
2006	 64.06	0	2148452..2149525	+	357	86357675	-	RHE_CH02056	-	sugar ABC transporter, ATP-binding protein
2007	 63.00	0	2149780..2150706	-	308	86357676	-	RHE_CH02057	-	5-dehydro-4-deoxyglucarate dehydratase
2008	 60.72	0	2150739..2151713	-	324	86357677	uxuAch	RHE_CH02058	-	mannonate dehydratase protein
2009	 63.85	0	2151779..2152489	-	236	86357678	-	RHE_CH02059	-	GntR family transcriptional regulator
2010	 60.34	0	2152621..2154216	+	531	86357679	dppAch2	RHE_CH02060	-	dipeptide ABC transporter, substrate-binding protein
2011	 61.52	0	2154237..2155265	+	342	86357680	dppBch2	RHE_CH02061	-	dipeptide ABC transporter, permease protein
2012	 63.34	0	2155262..2156164	+	300	86357681	dppCch2	RHE_CH02062	-	dipeptide ABC transporter, permease protein
2013	 64.54	0	2156151..2156996	+	281	86357682	dppDch2	RHE_CH02063	-	dipeptide ABC transporter, ATP-binding protein
2014	 62.90	0	2156993..2157736	+	247	86357683	dppFch2	RHE_CH02064	-	dipeptide ABC transporter, ATP-binding protein
2015	 59.26	0	2157723..2158262	-	179	86357684	-	RHE_CH02065	-	putative oxidoreductase protein
2016	 65.91	+1	2158259..2159314	-	351	86357685	-	RHE_CH02066	-	LacI family transcription regulator
2017	 64.68	0	2159504..2162026	+	840	86357686	-	RHE_CH02067	-	hypothetical protein
2018	 62.38	0	2162093..2163352	+	419	86357687	-	RHE_CH02068	-	sugar ABC transporter, substrate-binding protein
2019	 62.39	0	2163466..2164401	+	311	86357688	-	RHE_CH02069	-	sugar ABC transporter, permease protein
2020	 61.43	0	2164398..2165447	+	349	86357689	-	RHE_CH02070	-	sugar ABC transporter, permease protein
2021	 65.00	+1	2165466..2166545	+	359	86357690	-	RHE_CH02071	-	sugar ABC transporter, ATP-binding protein
2022	 59.04	0	2166607..2166855	-	82	86357691	-	RHE_CH02072	-	hypothetical protein
2023	 63.83	0	2167153..2167752	+	199	86357692	-	RHE_CH02073	-	hypothetical protein
2024	 63.42	0	2167912..2169204	+	430	86357693	-	RHE_CH02074	-	HlyD family protein secretion protein
2025	 64.30	0	2169218..2169934	+	238	86357694	-	RHE_CH02075	-	putative ABC transporter, ATP-binding protein
2026	 65.50	+1	2169924..2171126	+	400	86357695	-	RHE_CH02076	-	putative ABC transporter, permease protein
2027	 65.53	+1	2171429..2172043	+	204	86357696	-	RHE_CH02077	-	GntR family transcriptional regulator
2028	 61.99	0	2172092..2172904	-	270	86357697	fpr	RHE_CH02078	-	ferredoxin-NADP+ reductase protein
2029	 57.34	-1	2173250..2173978	+	242	86357698	pcs	RHE_CH02079	-	phosphatidylcholine synthase protein
2030	 60.14	0	2173989..2174969	+	326	86357699	qor	RHE_CH02080	-	quinone oxidoreductase protein
2031	 64.31	0	2175009..2176577	+	522	86357700	-	RHE_CH02081	-	sugar ABC transporter, ATP-binding protein
2032	 62.52	0	2176567..2177652	+	361	86357701	-	RHE_CH02082	-	sugar ABC transporter, permease protein
2033	 62.21	0	2177649..2178569	+	306	86357702	-	RHE_CH02083	-	sugar ABC transporter, permease protein
2034	 61.84	0	2178622..2179698	+	358	86357703	-	RHE_CH02084	-	putative ABC transporter, substrate-binding protein
2035	 58.57	0	2179844..2180806	+	320	86357704	-	RHE_CH02085	-	sugar ABC transporter, substrate-binding protein
2036	 62.20	0	2180927..2182450	+	507	86357705	-	RHE_CH02086	-	sugar ABC transporter, ATP-binding protein
2037	 60.30	0	2182447..2183451	+	334	86357706	-	RHE_CH02087	-	sugar ABC transporter, permease protein
2038	 58.31	-1	2183457..2184425	+	322	86357707	-	RHE_CH02088	-	inner membrane ABC transporter permease protein YjfF
2039	 62.89	0	2184503..2185216	+	237	86357708	-	RHE_CH02089	-	GntR family transcriptional regulator
2040	 64.98	+1	2185300..2186661	+	453	86357709	glmU	RHE_CH02090	-	UDP-N-acetylglucosamine pyrophosphorylase protein
2041	 61.90	0	2186771..2188597	+	608	86357710	glmS1	RHE_CH02091	-	D-fructose-6-phosphate amidotransferase
2042	 59.18	0	2188732..2189439	+	235	86357711	-	RHE_CH02092	-	hypothetical protein
2043	 64.25	0	2189436..2191541	-	701	86357712	recG	RHE_CH02093	-	ATP-dependent DNA helicase protein
2044	 60.42	0	2191556..2191939	+	127	86357713	-	RHE_CH02094	-	hypothetical protein
2045	 63.98	0	2191936..2195439	+	1167	86357714	mfd	RHE_CH02095	-	transcription-repair coupling factor (TRCF) protein
2046	 61.54	0	2195456..2195923	+	155	86357715	-	RHE_CH02096	-	putative redox protein
2047	 58.99	0	2196079..2196495	-	138	86357716	-	RHE_CH02097	-	hypothetical protein
2048	 61.46	0	2196504..2197175	-	223	86357717	-	RHE_CH02098	-	putative dithiol-disulfide isomerase protein (involved in polyketide biosynthesis)
2049	 58.07	-1	2197236..2199038	-	600	86357718	-	RHE_CH02099	-	peptide ABC transporter, substrate-binding protein
2050	 61.01	0	2199326..2199979	+	217	86357719	-	RHE_CH02100	-	putative signal peptide protein
2051	 54.24	-2	2200232..2200561	-	109	86357720	-	RHE_CH02101	-	hypothetical protein
2052	 59.43	0	2200720..2202129	-	469	86357721	glnA2	RHE_CH02102	-	glutamine synthetase protein
2053	 58.11	-1	2202208..2202546	-	112	86357722	glnB	RHE_CH02103	-	nitrogen regulatory protein P-II
2054	 67.65	+1	2202932..2204362	+	476	86357723	-	RHE_CH02104	-	hypothetical protein
2055	 59.48	0	2204368..2205174	-	268	86357724	-	RHE_CH02105	-	hypothetical protein
2056	 61.62	0	2205199..2205654	-	151	86357725	-	RHE_CH02106	-	acetyltransferase protein
2057	 62.66	0	2205657..2208578	-	973	86357726	uvrA	RHE_CH02107	-	excinuclease ABC subunit A
2058	 62.60	0	2208863..2209378	+	171	86357727	ssb	RHE_CH02108	-	single-strand DNA-binding protein
2059	 66.20	+1	2209461..2210108	-	215	86357728	-	RHE_CH02109	-	multiple antibiotic resistance transporter protein
2060	 63.59	0	2210346..2213171	+	941	162329639	gyrA	RHE_CH02110	-	DNA gyrase subunit A
2061	 55.32	-1	2213336..2213476	-	46	86357730	-	RHE_CH02111	-	hypothetical protein
2062	 58.02	-1	2213756..2214160	-	134	86357731	-	RHE_CH02112	-	hypothetical protein
2063	 61.82	0	2214193..2214687	+	164	86357732	coaD	RHE_CH02113	-	phosphopantetheine adenylyltransferase
2064	 58.29	-1	2214714..2215286	+	190	86357733	ppiA	RHE_CH02114	-	peptidyl prolyl cis-trans isomerase A signal peptide protein
2065	 60.00	0	2215315..2215824	+	169	86357734	ppiB	RHE_CH02115	-	peptidyl prolyl cis-trans isomerase B signal peptide protein
2066	 64.27	0	2215897..2216982	+	361	86357735	queA	RHE_CH02116	-	S-adenosylmethionine:tRNA ribosyltransferase-isomerase
2067	 64.19	0	2216979..2218109	+	376	86357736	tgt	RHE_CH02117	-	queuine tRNA-ribosyltransferase
2068	 54.90	-2	2218112..2219122	-	336	86357737	-	RHE_CH02118	-	putative acetyltransferase protein
2069	 59.67	0	2219290..2219718	-	142	86357738	-	RHE_CH02119	-	hypothetical protein
2070	 68.09	+2	2219799..2221064	-	421	86357739	fabF2	RHE_CH02120	-	3-oxoacyl-(acyl carrier protein) synthase II
2071	 60.74	0	2221078..2221617	-	179	86357740	-	RHE_CH02121	-	transcriptional regulator protein
61.61	MEAN

3.19	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.