IslandPathversion 1.0

IslandPath Analysis: Rhizobium etli CFN 42



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 61.61 STD DEV: 3.19
Rhizobium etli CFN 42, complete genome - 1..4381608
4035 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1659	 62.82	0	1780874..1781263	+	129	86357328	rpsK	RHE_CH01698	-	30S ribosomal protein S11
1660	 58.36	-1	1781361..1782371	+	336	86357329	rpoA	RHE_CH01699	-	DNA-directed RNA polymerase subunit alpha
1661	 65.72	+1	1782494..1782916	+	140	86357330	rplQ	RHE_CH01700	-	50S ribosomal protein L17
1662	 60.00	0	1783066..1783470	+	134	86357331	-	RHE_CH01701	-	hypothetical protein
1663	 58.60	0	1783489..1784145	-	218	86357332	-	RHE_CH01702	-	putative sulfite oxidase subunit YedZ
1664	 63.08	0	1784145..1785092	-	315	86357333	-	RHE_CH01703	-	putative sulfite oxidase subunit YedY
1665	 64.22	0	1785432..1787270	+	612	86357334	ilvDch1	RHE_CH01704	-	dihydroxy-acid dehydratase
1666	 60.34	0	1787330..1787677	-	115	86357335	-	RHE_CH01705	-	hypothetical protein
1667	 60.10	0	1787700..1788080	-	126	86357336	-	RHE_CH01706	-	hypothetical protein
1668	 62.34	0	1788325..1789617	+	430	86357337	degPch3	RHE_CH01707	-	serine protease DO-like protein
1669	 63.55	0	1789614..1790930	+	438	86357338	-	RHE_CH01708	-	recombination factor protein RarA
1670	 57.05	-1	1790943..1791254	-	103	86357339	-	RHE_CH01709	-	hypothetical protein
1671	 61.76	0	1791706..1792704	-	332	86357340	-	RHE_CH01710	-	2-dehydropantoate 2-reductase
1672	 62.91	0	1792860..1793711	-	283	86357341	-	RHE_CH01711	-	dehydrogenase protein
1673	 61.37	0	1793825..1794712	+	295	86357342	-	RHE_CH01712	-	LysR family transcriptional regulator
1674	 60.99	0	1794723..1795286	-	187	86357343	-	RHE_CH01713	-	putative nucleoside 2-deoxyribosyltransferase protein
1675	 62.74	0	1795568..1796611	+	347	86357344	-	RHE_CH01714	-	putative esterase/lipase/thioesterase family protein
1676	 62.18	0	1796638..1797261	-	207	86357345	-	RHE_CH01715	-	hypothetical protein
1677	 55.73	-1	1797408..1797782	-	124	86357346	-	RHE_CH01716	-	putative two-component sensor histidine kinase protein
1678	 60.32	0	1797775..1798515	-	246	86357347	-	RHE_CH01717	-	putative two-component sensor histidine kinase protein
1679	 59.45	0	1798617..1798907	-	96	86357348	-	RHE_CH01718	-	hypothetical protein
1680	 64.30	0	1799309..1800364	+	351	86357349	-	RHE_CH01719	-	LacI family transcription regulator
1681	 61.04	0	1800366..1802000	+	544	86357350	-	RHE_CH01720	-	acyl-CoA transferase protein
1682	 65.13	+1	1801993..1802772	+	259	86357351	-	RHE_CH01721	-	enoyl-CoA hydratase protein
1683	 64.10	0	1802772..1804292	+	506	86357352	-	RHE_CH01722	-	NADP-dependent L-sorbosone dehydrogenase protein
1684	 62.47	0	1804381..1805643	+	420	86357353	-	RHE_CH01723	-	sugar ABC transporter, substrate-binding protein
1685	 61.53	0	1805756..1806709	+	317	86357354	-	RHE_CH01724	-	sugar ABC transporter, permease protein
1686	 61.63	0	1806706..1807677	+	323	86357355	-	RHE_CH01725	-	sugar ABC transporter, permease protein
1687	 66.04	+1	1807681..1808796	+	371	86357356	-	RHE_CH01726	-	sugar ABC transporter, ATP-binding protein
1688	 61.14	0	1808812..1810350	+	512	86357357	-	RHE_CH01727	-	dehydrogenase protein
1689	 63.12	0	1810492..1812015	+	507	86357358	-	RHE_CH01728	-	FAD-dependent L-sorbose dehydrogenase protein
1690	 58.63	0	1812028..1813197	+	389	86357359	-	RHE_CH01729	-	oxidoreductase protein
1691	 63.33	0	1813211..1815307	+	698	86357360	-	RHE_CH01730	-	putative oxidoreductase protein
1692	 61.17	0	1815750..1816532	-	260	86357361	xthA1	RHE_CH01731	-	exodeoxyribonuclease III protein
1693	 63.25	0	1816659..1817156	-	165	86357362	-	RHE_CH01732	-	hypothetical protein
1694	 60.00	0	1817452..1817946	+	164	86357363	-	RHE_CH01733	-	hypothetical protein
1695	 60.42	0	1817995..1818618	-	207	86357364	-	RHE_CH01734	-	two-component response regulator protein
1696	 60.69	0	1818621..1820009	-	462	86357365	-	RHE_CH01735	-	two-component sensor histidine kinase protein
1697	 60.48	0	1820227..1821261	+	344	86357366	-	RHE_CH01736	-	ubiquinone/menaquinone biosynthesis methyltransferase protein
1698	 62.43	0	1821372..1822220	+	282	86357367	-	RHE_CH01737	-	hypothetical protein
1699	 61.17	0	1822493..1823074	+	193	86357368	-	RHE_CH01738	-	hypothetical protein
1700	 55.56	-1	1823189..1823503	+	104	86357369	-	RHE_CH01739	-	hypothetical protein
1701	 63.05	0	1823567..1824451	+	294	86357370	-	RHE_CH01740	-	hypothetical protein
1702	 62.44	0	1824551..1825543	+	330	86357371	-	RHE_CH01741	-	hypothetical protein
1703	 58.33	-1	1825589..1826380	-	263	86357372	phhA	RHE_CH01742	-	phenylalanine 4-monooxygenase
1704	 58.87	0	1826503..1826964	+	153	86357373	-	RHE_CH01743	-	AsnC family transcriptional regulator
1705	 58.88	0	1826968..1827468	-	166	86357374	-	RHE_CH01744	-	AsnC family transcriptional regulator
1706	 57.66	-1	1827599..1828708	+	369	86357375	-	RHE_CH01745	-	4-hydroxyphenylpyruvate dioxygenase protein
1707	 60.65	0	1828748..1830109	+	453	86357376	hmgA	RHE_CH01746	-	homogentisate 1,2-dioxygenase
1708	 64.13	0	1830148..1831173	+	341	86357377	-	RHE_CH01747	-	fumarylacetoacetate hydrolase
1709	 59.40	0	1831170..1831802	+	210	86357378	maiA	RHE_CH01748	-	maleylacetoacetate isomerase protein
1710	 60.51	0	1831806..1832276	-	156	86357379	-	RHE_CH01749	-	hypothetical protein
1711	 60.66	0	1832693..1833958	+	421	86357380	-	RHE_CH01750	-	hypothetical protein
1712	 62.61	0	1833850..1834194	-	114	86357381	-	RHE_CH01751	-	hypothetical protein
1713	 63.39	0	1834204..1834722	-	172	86357382	-	RHE_CH01752	-	putative phosphohistidine phosphatase protein
1714	 62.08	0	1835177..1838992	-	1271	86357383	nrd	RHE_CH01753	-	ribonucleotide-diphosphate reductase subunit alpha
1715	 61.01	0	1839612..1840106	-	164	86357384	gpt	RHE_CH01754	-	xanthine-guanine phosphoribosyltransferase
1716	 61.17	0	1840285..1841121	-	278	86357385	-	RHE_CH01755	-	putative universal stress protein
1717	 62.68	0	1841212..1841988	-	258	86357386	cinA1	RHE_CH01756	-	competence-damage associated protein (nucleotide-utilizing enzyme related tomolybdopterin-biosynthesis enzyme MoeA)
1718	 53.75	-2	1842414..1844411	+	665	86357387	-	RHE_CH01757	-	hypothetical protein
1719	 59.24	0	1845400..1845924	-	174	86357388	-	RHE_CH01758	-	hypothetical protein
1720	 62.14	0	1845997..1847211	+	404	86357389	ilvA	RHE_CH01759	-	threonine dehydratase
1721	 58.72	0	1847249..1847575	+	108	86357390	-	RHE_CH01760	-	hypothetical protein
1722	 61.02	0	1847811..1849067	+	418	86357391	-	RHE_CH01761	-	putative sensory box/GGDEF family protein
1723	 64.35	0	1849092..1849868	-	258	86357392	-	RHE_CH01762	-	oxidoreductase protein
1724	 62.85	0	1849974..1850549	+	191	86357393	-	RHE_CH01763	-	TetR family transcriptional regulator
1725	 62.44	0	1850596..1851210	-	204	86357394	acpD	RHE_CH01764	-	[acyl-carrier-protein] phosphodiesterase protein
1726	 62.02	0	1851350..1852318	+	322	86357395	-	RHE_CH01765	-	LysR family transcriptional regulator
1727	 60.23	0	1852357..1854345	-	662	86357396	cpdB	RHE_CH01766	-	bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein
1728	 60.25	0	1854626..1855030	-	134	86357397	-	RHE_CH01767	-	hypothetical protein
1729	 61.06	0	1855175..1856083	-	302	86357398	-	RHE_CH01768	-	hypothetical protein
1730	 57.36	-1	1856155..1856616	-	153	86357399	aldR	RHE_CH01769	-	AsnC family leucine-responsive regulatory protein
1731	 64.25	0	1856773..1857891	+	372	86357400	aldA	RHE_CH01770	-	alanine dehydrogenase protein
1732	 59.41	0	1857908..1858417	-	169	86357401	-	RHE_CH01771	-	hypothetical protein
1733	 59.71	0	1858680..1859240	-	186	86357402	-	RHE_CH01772	-	putative acetyltransferase protein
1734	 65.29	+1	1859246..1860115	-	289	86357403	sseA	RHE_CH01773	-	thiosulfate sulfurtransferase protein
1735	 62.20	0	1860108..1860869	-	253	86357404	alaS1	RHE_CH01774	-	alanyl-tRNA synthetase protein
1736	 61.37	0	1860876..1861913	-	345	86357405	cysK2	RHE_CH01775	-	cysteine synthase A
1737	 62.88	0	1862137..1862796	+	219	86357406	chrR	RHE_CH01776	-	transcriptional activator (anti-sigma factor) protein
1738	 60.36	0	1862896..1863720	+	274	86357407	-	RHE_CH01777	-	oxidoreductase protein
1739	 61.16	0	1863880..1864206	-	108	86357408	-	RHE_CH01778	-	hypothetical protein
1740	 62.46	0	1864519..1865184	+	221	86357409	-	RHE_CH01779	-	haloacid dehalogenase-like hydrolase
1741	 65.09	+1	1865214..1867871	-	885	86357410	narB	RHE_CH01780	-	nitrate reductase large subunit protein
1742	 63.64	0	1867871..1868200	-	109	86357411	nirD	RHE_CH01781	-	nitrite reductase [NAD(P)H], small subunit protein
1743	 62.38	0	1868211..1870661	-	816	86357412	nirB	RHE_CH01782	-	nitrite reductase [NAD(P)H], large subunit protein
1744	 63.37	0	1870680..1871921	-	413	86357413	-	RHE_CH01783	-	nitrate transporter protein
1745	 62.42	0	1872405..1873676	-	423	86357414	nrtCch	RHE_CH01784	-	nitrate ABC transporter, ATP-binding protein
1746	 59.35	0	1873720..1874307	-	195	86357415	nasT	RHE_CH01785	-	two-component response regulator protein
1747	 61.09	0	1874391..1875395	-	334	86357416	gntR	RHE_CH01786	-	LacI family transcription regulator
1748	 59.39	0	1875614..1876753	+	379	86357417	rbsBch2	RHE_CH01787	-	ribose ABC transporter, substrate-binding protein
1749	 59.71	0	1876830..1878368	+	512	86357418	rbsAch2	RHE_CH01788	-	ribose ABC transporter, ATP-binding protein
1750	 59.34	0	1878365..1879360	+	331	86357419	rbsCch2	RHE_CH01789	-	ribose ABC transporter, permease protein
1751	 60.55	0	1879357..1880337	+	326	86357420	rbsCch3	RHE_CH01790	-	ribose ABC transporter, permease protein
1752	 59.09	0	1880642..1881301	+	219	86357421	-	RHE_CH01791	-	anti-oxidant AhpCTSA family protein
1753	 61.34	0	1881449..1882405	+	318	86357422	-	RHE_CH01792	-	glycosyltransferase
1754	 62.26	0	1882501..1883454	+	317	86357423	-	RHE_CH01793	-	hypothetical protein
1755	 64.69	0	1883471..1884736	-	421	86357424	ttuD	RHE_CH01794	-	hydroxypyruvate reductase protein
1756	 62.33	0	1884931..1885230	+	99	86357425	-	RHE_CH01795	-	hypothetical protein
1757	 54.81	-2	1885380..1885784	+	134	86357426	-	RHE_CH01796	-	hypothetical protein
1758	 55.00	-2	1885838..1886197	-	119	86357427	-	RHE_CH01797	-	hypothetical protein
61.61	MEAN

3.19	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.