IslandPathversion 1.0

IslandPath Analysis: Rhizobium etli CFN 42



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 61.61 STD DEV: 3.19
Rhizobium etli CFN 42, complete genome - 1..4381608
4035 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1636	 61.06	0	1768560..1769201	+	213	86357305	rplC	RHE_CH01675	-	50S ribosomal protein L3
1637	 61.19	0	1769215..1769835	+	206	86357306	rplD	RHE_CH01676	-	50S ribosomal protein L4
1638	 56.80	-1	1769832..1770125	+	97	86357307	rplW	RHE_CH01677	-	50S ribosomal protein L23
1639	 62.13	0	1770137..1770973	+	278	86357308	rplB	RHE_CH01678	-	50S ribosomal protein L2
1640	 55.20	-2	1770989..1771267	+	92	86357309	rpsS	RHE_CH01679	-	30S ribosomal protein S19
1641	 64.62	0	1771270..1771659	+	129	86357310	rplV	RHE_CH01680	-	50S ribosomal protein L22
1642	 62.45	0	1771659..1772393	+	244	86357311	rpsC	RHE_CH01681	-	30S ribosomal protein S3
1643	 61.11	0	1772432..1772845	+	137	86357312	rplP	RHE_CH01682	-	50S ribosomal protein L16
1644	 58.21	-1	1772857..1773057	+	66	86357313	rpmC	RHE_CH01683	-	50S ribosomal protein L29
1645	 56.67	-1	1773070..1773309	+	79	86357314	rpsQ	RHE_CH01684	-	30S ribosomal protein S17
1646	 58.27	-1	1773569..1773937	+	122	86357315	rplN	RHE_CH01685	-	50S ribosomal protein L14
1647	 59.55	0	1773950..1774258	+	102	86357316	rplX	RHE_CH01686	-	50S ribosomal protein L24
1648	 58.96	0	1774251..1774808	+	185	86357317	rplE	RHE_CH01687	-	50S ribosomal protein L5
1649	 59.80	0	1774841..1775146	+	101	86357318	rpsN	RHE_CH01688	-	30S ribosomal protein S14
1650	 58.90	0	1775159..1775557	+	132	86357319	rpsH	RHE_CH01689	-	30S ribosomal protein S8
1651	 58.61	0	1775600..1776133	+	177	86357320	rplF	RHE_CH01690	-	50S ribosomal protein L6
1652	 64.19	0	1776146..1776508	+	120	86357321	rplR	RHE_CH01691	-	50S ribosomal protein L18
1653	 63.33	0	1776643..1777212	+	189	86357322	rpsE	RHE_CH01692	-	30S ribosomal protein S5
1654	 59.05	0	1777226..1777435	+	69	86357323	rpmD	RHE_CH01693	-	50S ribosomal protein L30
1655	 62.47	0	1777452..1777928	+	158	86357324	rplO	RHE_CH01694	-	50S ribosomal protein L15
1656	 59.88	0	1778162..1779502	+	446	86357325	secY	RHE_CH01695	-	preprotein translocase subunit SecY
1657	 60.68	0	1779499..1780149	+	216	86357326	adk	RHE_CH01696	-	adenylate kinase (ATP-AMP transphosphorylase) protein
1658	 60.70	0	1780372..1780740	+	122	86357327	rpsM	RHE_CH01697	-	30S ribosomal protein S13
1659	 62.82	0	1780874..1781263	+	129	86357328	rpsK	RHE_CH01698	-	30S ribosomal protein S11
1660	 58.36	-1	1781361..1782371	+	336	86357329	rpoA	RHE_CH01699	-	DNA-directed RNA polymerase subunit alpha
1661	 65.72	+1	1782494..1782916	+	140	86357330	rplQ	RHE_CH01700	-	50S ribosomal protein L17
1662	 60.00	0	1783066..1783470	+	134	86357331	-	RHE_CH01701	-	hypothetical protein
1663	 58.60	0	1783489..1784145	-	218	86357332	-	RHE_CH01702	-	putative sulfite oxidase subunit YedZ
1664	 63.08	0	1784145..1785092	-	315	86357333	-	RHE_CH01703	-	putative sulfite oxidase subunit YedY
1665	 64.22	0	1785432..1787270	+	612	86357334	ilvDch1	RHE_CH01704	-	dihydroxy-acid dehydratase
1666	 60.34	0	1787330..1787677	-	115	86357335	-	RHE_CH01705	-	hypothetical protein
1667	 60.10	0	1787700..1788080	-	126	86357336	-	RHE_CH01706	-	hypothetical protein
1668	 62.34	0	1788325..1789617	+	430	86357337	degPch3	RHE_CH01707	-	serine protease DO-like protein
1669	 63.55	0	1789614..1790930	+	438	86357338	-	RHE_CH01708	-	recombination factor protein RarA
1670	 57.05	-1	1790943..1791254	-	103	86357339	-	RHE_CH01709	-	hypothetical protein
1671	 61.76	0	1791706..1792704	-	332	86357340	-	RHE_CH01710	-	2-dehydropantoate 2-reductase
1672	 62.91	0	1792860..1793711	-	283	86357341	-	RHE_CH01711	-	dehydrogenase protein
1673	 61.37	0	1793825..1794712	+	295	86357342	-	RHE_CH01712	-	LysR family transcriptional regulator
1674	 60.99	0	1794723..1795286	-	187	86357343	-	RHE_CH01713	-	putative nucleoside 2-deoxyribosyltransferase protein
1675	 62.74	0	1795568..1796611	+	347	86357344	-	RHE_CH01714	-	putative esterase/lipase/thioesterase family protein
1676	 62.18	0	1796638..1797261	-	207	86357345	-	RHE_CH01715	-	hypothetical protein
1677	 55.73	-1	1797408..1797782	-	124	86357346	-	RHE_CH01716	-	putative two-component sensor histidine kinase protein
1678	 60.32	0	1797775..1798515	-	246	86357347	-	RHE_CH01717	-	putative two-component sensor histidine kinase protein
1679	 59.45	0	1798617..1798907	-	96	86357348	-	RHE_CH01718	-	hypothetical protein
1680	 64.30	0	1799309..1800364	+	351	86357349	-	RHE_CH01719	-	LacI family transcription regulator
1681	 61.04	0	1800366..1802000	+	544	86357350	-	RHE_CH01720	-	acyl-CoA transferase protein
1682	 65.13	+1	1801993..1802772	+	259	86357351	-	RHE_CH01721	-	enoyl-CoA hydratase protein
1683	 64.10	0	1802772..1804292	+	506	86357352	-	RHE_CH01722	-	NADP-dependent L-sorbosone dehydrogenase protein
1684	 62.47	0	1804381..1805643	+	420	86357353	-	RHE_CH01723	-	sugar ABC transporter, substrate-binding protein
1685	 61.53	0	1805756..1806709	+	317	86357354	-	RHE_CH01724	-	sugar ABC transporter, permease protein
1686	 61.63	0	1806706..1807677	+	323	86357355	-	RHE_CH01725	-	sugar ABC transporter, permease protein
1687	 66.04	+1	1807681..1808796	+	371	86357356	-	RHE_CH01726	-	sugar ABC transporter, ATP-binding protein
1688	 61.14	0	1808812..1810350	+	512	86357357	-	RHE_CH01727	-	dehydrogenase protein
1689	 63.12	0	1810492..1812015	+	507	86357358	-	RHE_CH01728	-	FAD-dependent L-sorbose dehydrogenase protein
1690	 58.63	0	1812028..1813197	+	389	86357359	-	RHE_CH01729	-	oxidoreductase protein
1691	 63.33	0	1813211..1815307	+	698	86357360	-	RHE_CH01730	-	putative oxidoreductase protein
1692	 61.17	0	1815750..1816532	-	260	86357361	xthA1	RHE_CH01731	-	exodeoxyribonuclease III protein
1693	 63.25	0	1816659..1817156	-	165	86357362	-	RHE_CH01732	-	hypothetical protein
1694	 60.00	0	1817452..1817946	+	164	86357363	-	RHE_CH01733	-	hypothetical protein
1695	 60.42	0	1817995..1818618	-	207	86357364	-	RHE_CH01734	-	two-component response regulator protein
1696	 60.69	0	1818621..1820009	-	462	86357365	-	RHE_CH01735	-	two-component sensor histidine kinase protein
1697	 60.48	0	1820227..1821261	+	344	86357366	-	RHE_CH01736	-	ubiquinone/menaquinone biosynthesis methyltransferase protein
1698	 62.43	0	1821372..1822220	+	282	86357367	-	RHE_CH01737	-	hypothetical protein
1699	 61.17	0	1822493..1823074	+	193	86357368	-	RHE_CH01738	-	hypothetical protein
1700	 55.56	-1	1823189..1823503	+	104	86357369	-	RHE_CH01739	-	hypothetical protein
1701	 63.05	0	1823567..1824451	+	294	86357370	-	RHE_CH01740	-	hypothetical protein
1702	 62.44	0	1824551..1825543	+	330	86357371	-	RHE_CH01741	-	hypothetical protein
1703	 58.33	-1	1825589..1826380	-	263	86357372	phhA	RHE_CH01742	-	phenylalanine 4-monooxygenase
1704	 58.87	0	1826503..1826964	+	153	86357373	-	RHE_CH01743	-	AsnC family transcriptional regulator
1705	 58.88	0	1826968..1827468	-	166	86357374	-	RHE_CH01744	-	AsnC family transcriptional regulator
1706	 57.66	-1	1827599..1828708	+	369	86357375	-	RHE_CH01745	-	4-hydroxyphenylpyruvate dioxygenase protein
1707	 60.65	0	1828748..1830109	+	453	86357376	hmgA	RHE_CH01746	-	homogentisate 1,2-dioxygenase
1708	 64.13	0	1830148..1831173	+	341	86357377	-	RHE_CH01747	-	fumarylacetoacetate hydrolase
1709	 59.40	0	1831170..1831802	+	210	86357378	maiA	RHE_CH01748	-	maleylacetoacetate isomerase protein
1710	 60.51	0	1831806..1832276	-	156	86357379	-	RHE_CH01749	-	hypothetical protein
1711	 60.66	0	1832693..1833958	+	421	86357380	-	RHE_CH01750	-	hypothetical protein
1712	 62.61	0	1833850..1834194	-	114	86357381	-	RHE_CH01751	-	hypothetical protein
1713	 63.39	0	1834204..1834722	-	172	86357382	-	RHE_CH01752	-	putative phosphohistidine phosphatase protein
1714	 62.08	0	1835177..1838992	-	1271	86357383	nrd	RHE_CH01753	-	ribonucleotide-diphosphate reductase subunit alpha
1715	 61.01	0	1839612..1840106	-	164	86357384	gpt	RHE_CH01754	-	xanthine-guanine phosphoribosyltransferase
1716	 61.17	0	1840285..1841121	-	278	86357385	-	RHE_CH01755	-	putative universal stress protein
1717	 62.68	0	1841212..1841988	-	258	86357386	cinA1	RHE_CH01756	-	competence-damage associated protein (nucleotide-utilizing enzyme related tomolybdopterin-biosynthesis enzyme MoeA)
1718	 53.75	-2	1842414..1844411	+	665	86357387	-	RHE_CH01757	-	hypothetical protein
1719	 59.24	0	1845400..1845924	-	174	86357388	-	RHE_CH01758	-	hypothetical protein
1720	 62.14	0	1845997..1847211	+	404	86357389	ilvA	RHE_CH01759	-	threonine dehydratase
1721	 58.72	0	1847249..1847575	+	108	86357390	-	RHE_CH01760	-	hypothetical protein
1722	 61.02	0	1847811..1849067	+	418	86357391	-	RHE_CH01761	-	putative sensory box/GGDEF family protein
1723	 64.35	0	1849092..1849868	-	258	86357392	-	RHE_CH01762	-	oxidoreductase protein
1724	 62.85	0	1849974..1850549	+	191	86357393	-	RHE_CH01763	-	TetR family transcriptional regulator
1725	 62.44	0	1850596..1851210	-	204	86357394	acpD	RHE_CH01764	-	[acyl-carrier-protein] phosphodiesterase protein
1726	 62.02	0	1851350..1852318	+	322	86357395	-	RHE_CH01765	-	LysR family transcriptional regulator
1727	 60.23	0	1852357..1854345	-	662	86357396	cpdB	RHE_CH01766	-	bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein
1728	 60.25	0	1854626..1855030	-	134	86357397	-	RHE_CH01767	-	hypothetical protein
1729	 61.06	0	1855175..1856083	-	302	86357398	-	RHE_CH01768	-	hypothetical protein
1730	 57.36	-1	1856155..1856616	-	153	86357399	aldR	RHE_CH01769	-	AsnC family leucine-responsive regulatory protein
1731	 64.25	0	1856773..1857891	+	372	86357400	aldA	RHE_CH01770	-	alanine dehydrogenase protein
1732	 59.41	0	1857908..1858417	-	169	86357401	-	RHE_CH01771	-	hypothetical protein
1733	 59.71	0	1858680..1859240	-	186	86357402	-	RHE_CH01772	-	putative acetyltransferase protein
1734	 65.29	+1	1859246..1860115	-	289	86357403	sseA	RHE_CH01773	-	thiosulfate sulfurtransferase protein
1735	 62.20	0	1860108..1860869	-	253	86357404	alaS1	RHE_CH01774	-	alanyl-tRNA synthetase protein
61.61	MEAN

3.19	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.