IslandPathversion 1.0

IslandPath Analysis: Rhizobium etli CFN 42



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 61.61 STD DEV: 3.19
Rhizobium etli CFN 42, complete genome - 1..4381608
4035 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1609	 55.17	-2	1731975..1732487	-	170	86357278	-	RHE_CH01644	-	hypothetical protein
1610	 62.82	0	1732716..1735601	-	961	86357279	rne	RHE_CH01645	-	ribonuclease E protein
1611	 63.12	0	1736299..1737483	+	394	86357280	amiC	RHE_CH01646	-	n-acetylmuramoyl-l-alanine amidase protein
1612	 62.64	0	1737845..1740304	+	819	86357281	mrcA	RHE_CH01647	-	penicillin binding peptidoglycan synthetase protein
1613	 62.33	0	1740569..1741537	+	322	86357282	prfB	RHE_CH01648	-	peptide chain release factor 2
1614	 62.65	0	1741589..1742608	-	339	86357283	-	RHE_CH01649	-	hypothetical protein
1615	 60.52	0	1742641..1743144	-	167	86357284	-	RHE_CH01650	-	hypothetical protein
1616	 61.50	0	1743149..1743922	-	257	86357285	ppnK	RHE_CH01651	-	inorganic polyphosphate/ATP-NAD kinase
1617	 64.90	+1	1744357..1744695	+	112	86357286	-	RHE_CH01653	-	hypothetical protein
1618	 61.90	0	1745212..1745904	-	230	86357287	-	RHE_CH01654	-	putative metalloprotease inhibitor (transcriptional regulator) protein
1619	 63.52	0	1745952..1746842	-	296	86357288	-	RHE_CH01655	-	tRNA/rRNA methyltransferase protein
1620	 61.48	0	1747562..1748737	+	391	86357289	tufB	RHE_CH01658	-	elongation factor Tu
1621	 56.94	-1	1749248..1750141	+	297	86357290	-	RHE_CH01659	-	p nucleoside-diphosphate-sugar epimerase protein
1622	 56.72	-1	1750576..1750776	+	66	86357291	secE	RHE_CH01661	-	preprotein translocase subunit SecE
1623	 58.00	-1	1750794..1751324	+	176	86357292	nusG	RHE_CH01662	-	transcription antitermination protein NusG
1624	 57.18	-1	1751502..1751933	+	143	86357293	rplK	RHE_CH01663	-	50S ribosomal protein L11
1625	 63.53	0	1751938..1752639	+	233	86357294	rplA	RHE_CH01664	-	50S ribosomal protein L1
1626	 58.19	-1	1752970..1753488	+	172	86357295	rplJ	RHE_CH01665	-	50S ribosomal protein L10
1627	 58.59	0	1753545..1753928	+	127	86357296	rplL	RHE_CH01666	-	50S ribosomal protein L7/L12
1628	 61.40	0	1754187..1758326	+	1379	86357297	rpoB	RHE_CH01667	-	DNA-directed RNA polymerase subunit beta
1629	 61.13	0	1758516..1762724	+	1402	86357298	rpoC	RHE_CH01668	-	DNA-directed RNA polymerase subunit beta'
1630	 59.86	0	1762825..1763118	-	97	86357299	-	RHE_CH01669	-	hypothetical protein
1631	 59.14	0	1763615..1763986	+	123	86357300	rpsL	RHE_CH01670	-	30S ribosomal protein S12
1632	 59.66	0	1764065..1764535	+	156	86357301	rpsG	RHE_CH01671	-	30S ribosomal protein S7
1633	 59.43	0	1764565..1766664	+	699	86357302	fusA2	RHE_CH01672	-	elongation factor G
1634	 61.49	0	1766733..1767911	+	392	86357303	tufA	RHE_CH01673	-	elongation factor Tu
1635	 60.84	0	1768218..1768526	+	102	86357304	rpsJ	RHE_CH01674	-	30S ribosomal protein S10
1636	 61.06	0	1768560..1769201	+	213	86357305	rplC	RHE_CH01675	-	50S ribosomal protein L3
1637	 61.19	0	1769215..1769835	+	206	86357306	rplD	RHE_CH01676	-	50S ribosomal protein L4
1638	 56.80	-1	1769832..1770125	+	97	86357307	rplW	RHE_CH01677	-	50S ribosomal protein L23
1639	 62.13	0	1770137..1770973	+	278	86357308	rplB	RHE_CH01678	-	50S ribosomal protein L2
1640	 55.20	-2	1770989..1771267	+	92	86357309	rpsS	RHE_CH01679	-	30S ribosomal protein S19
1641	 64.62	0	1771270..1771659	+	129	86357310	rplV	RHE_CH01680	-	50S ribosomal protein L22
1642	 62.45	0	1771659..1772393	+	244	86357311	rpsC	RHE_CH01681	-	30S ribosomal protein S3
1643	 61.11	0	1772432..1772845	+	137	86357312	rplP	RHE_CH01682	-	50S ribosomal protein L16
1644	 58.21	-1	1772857..1773057	+	66	86357313	rpmC	RHE_CH01683	-	50S ribosomal protein L29
1645	 56.67	-1	1773070..1773309	+	79	86357314	rpsQ	RHE_CH01684	-	30S ribosomal protein S17
1646	 58.27	-1	1773569..1773937	+	122	86357315	rplN	RHE_CH01685	-	50S ribosomal protein L14
1647	 59.55	0	1773950..1774258	+	102	86357316	rplX	RHE_CH01686	-	50S ribosomal protein L24
1648	 58.96	0	1774251..1774808	+	185	86357317	rplE	RHE_CH01687	-	50S ribosomal protein L5
1649	 59.80	0	1774841..1775146	+	101	86357318	rpsN	RHE_CH01688	-	30S ribosomal protein S14
1650	 58.90	0	1775159..1775557	+	132	86357319	rpsH	RHE_CH01689	-	30S ribosomal protein S8
1651	 58.61	0	1775600..1776133	+	177	86357320	rplF	RHE_CH01690	-	50S ribosomal protein L6
1652	 64.19	0	1776146..1776508	+	120	86357321	rplR	RHE_CH01691	-	50S ribosomal protein L18
1653	 63.33	0	1776643..1777212	+	189	86357322	rpsE	RHE_CH01692	-	30S ribosomal protein S5
1654	 59.05	0	1777226..1777435	+	69	86357323	rpmD	RHE_CH01693	-	50S ribosomal protein L30
1655	 62.47	0	1777452..1777928	+	158	86357324	rplO	RHE_CH01694	-	50S ribosomal protein L15
1656	 59.88	0	1778162..1779502	+	446	86357325	secY	RHE_CH01695	-	preprotein translocase subunit SecY
1657	 60.68	0	1779499..1780149	+	216	86357326	adk	RHE_CH01696	-	adenylate kinase (ATP-AMP transphosphorylase) protein
1658	 60.70	0	1780372..1780740	+	122	86357327	rpsM	RHE_CH01697	-	30S ribosomal protein S13
1659	 62.82	0	1780874..1781263	+	129	86357328	rpsK	RHE_CH01698	-	30S ribosomal protein S11
1660	 58.36	-1	1781361..1782371	+	336	86357329	rpoA	RHE_CH01699	-	DNA-directed RNA polymerase subunit alpha
1661	 65.72	+1	1782494..1782916	+	140	86357330	rplQ	RHE_CH01700	-	50S ribosomal protein L17
1662	 60.00	0	1783066..1783470	+	134	86357331	-	RHE_CH01701	-	hypothetical protein
1663	 58.60	0	1783489..1784145	-	218	86357332	-	RHE_CH01702	-	putative sulfite oxidase subunit YedZ
1664	 63.08	0	1784145..1785092	-	315	86357333	-	RHE_CH01703	-	putative sulfite oxidase subunit YedY
1665	 64.22	0	1785432..1787270	+	612	86357334	ilvDch1	RHE_CH01704	-	dihydroxy-acid dehydratase
1666	 60.34	0	1787330..1787677	-	115	86357335	-	RHE_CH01705	-	hypothetical protein
1667	 60.10	0	1787700..1788080	-	126	86357336	-	RHE_CH01706	-	hypothetical protein
1668	 62.34	0	1788325..1789617	+	430	86357337	degPch3	RHE_CH01707	-	serine protease DO-like protein
1669	 63.55	0	1789614..1790930	+	438	86357338	-	RHE_CH01708	-	recombination factor protein RarA
1670	 57.05	-1	1790943..1791254	-	103	86357339	-	RHE_CH01709	-	hypothetical protein
1671	 61.76	0	1791706..1792704	-	332	86357340	-	RHE_CH01710	-	2-dehydropantoate 2-reductase
1672	 62.91	0	1792860..1793711	-	283	86357341	-	RHE_CH01711	-	dehydrogenase protein
1673	 61.37	0	1793825..1794712	+	295	86357342	-	RHE_CH01712	-	LysR family transcriptional regulator
1674	 60.99	0	1794723..1795286	-	187	86357343	-	RHE_CH01713	-	putative nucleoside 2-deoxyribosyltransferase protein
1675	 62.74	0	1795568..1796611	+	347	86357344	-	RHE_CH01714	-	putative esterase/lipase/thioesterase family protein
1676	 62.18	0	1796638..1797261	-	207	86357345	-	RHE_CH01715	-	hypothetical protein
1677	 55.73	-1	1797408..1797782	-	124	86357346	-	RHE_CH01716	-	putative two-component sensor histidine kinase protein
1678	 60.32	0	1797775..1798515	-	246	86357347	-	RHE_CH01717	-	putative two-component sensor histidine kinase protein
1679	 59.45	0	1798617..1798907	-	96	86357348	-	RHE_CH01718	-	hypothetical protein
1680	 64.30	0	1799309..1800364	+	351	86357349	-	RHE_CH01719	-	LacI family transcription regulator
1681	 61.04	0	1800366..1802000	+	544	86357350	-	RHE_CH01720	-	acyl-CoA transferase protein
1682	 65.13	+1	1801993..1802772	+	259	86357351	-	RHE_CH01721	-	enoyl-CoA hydratase protein
1683	 64.10	0	1802772..1804292	+	506	86357352	-	RHE_CH01722	-	NADP-dependent L-sorbosone dehydrogenase protein
1684	 62.47	0	1804381..1805643	+	420	86357353	-	RHE_CH01723	-	sugar ABC transporter, substrate-binding protein
1685	 61.53	0	1805756..1806709	+	317	86357354	-	RHE_CH01724	-	sugar ABC transporter, permease protein
1686	 61.63	0	1806706..1807677	+	323	86357355	-	RHE_CH01725	-	sugar ABC transporter, permease protein
1687	 66.04	+1	1807681..1808796	+	371	86357356	-	RHE_CH01726	-	sugar ABC transporter, ATP-binding protein
1688	 61.14	0	1808812..1810350	+	512	86357357	-	RHE_CH01727	-	dehydrogenase protein
1689	 63.12	0	1810492..1812015	+	507	86357358	-	RHE_CH01728	-	FAD-dependent L-sorbose dehydrogenase protein
1690	 58.63	0	1812028..1813197	+	389	86357359	-	RHE_CH01729	-	oxidoreductase protein
1691	 63.33	0	1813211..1815307	+	698	86357360	-	RHE_CH01730	-	putative oxidoreductase protein
1692	 61.17	0	1815750..1816532	-	260	86357361	xthA1	RHE_CH01731	-	exodeoxyribonuclease III protein
1693	 63.25	0	1816659..1817156	-	165	86357362	-	RHE_CH01732	-	hypothetical protein
1694	 60.00	0	1817452..1817946	+	164	86357363	-	RHE_CH01733	-	hypothetical protein
1695	 60.42	0	1817995..1818618	-	207	86357364	-	RHE_CH01734	-	two-component response regulator protein
1696	 60.69	0	1818621..1820009	-	462	86357365	-	RHE_CH01735	-	two-component sensor histidine kinase protein
1697	 60.48	0	1820227..1821261	+	344	86357366	-	RHE_CH01736	-	ubiquinone/menaquinone biosynthesis methyltransferase protein
1698	 62.43	0	1821372..1822220	+	282	86357367	-	RHE_CH01737	-	hypothetical protein
1699	 61.17	0	1822493..1823074	+	193	86357368	-	RHE_CH01738	-	hypothetical protein
1700	 55.56	-1	1823189..1823503	+	104	86357369	-	RHE_CH01739	-	hypothetical protein
1701	 63.05	0	1823567..1824451	+	294	86357370	-	RHE_CH01740	-	hypothetical protein
1702	 62.44	0	1824551..1825543	+	330	86357371	-	RHE_CH01741	-	hypothetical protein
1703	 58.33	-1	1825589..1826380	-	263	86357372	phhA	RHE_CH01742	-	phenylalanine 4-monooxygenase
1704	 58.87	0	1826503..1826964	+	153	86357373	-	RHE_CH01743	-	AsnC family transcriptional regulator
1705	 58.88	0	1826968..1827468	-	166	86357374	-	RHE_CH01744	-	AsnC family transcriptional regulator
1706	 57.66	-1	1827599..1828708	+	369	86357375	-	RHE_CH01745	-	4-hydroxyphenylpyruvate dioxygenase protein
1707	 60.65	0	1828748..1830109	+	453	86357376	hmgA	RHE_CH01746	-	homogentisate 1,2-dioxygenase
1708	 64.13	0	1830148..1831173	+	341	86357377	-	RHE_CH01747	-	fumarylacetoacetate hydrolase
61.61	MEAN

3.19	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.