IslandPathversion 1.0

IslandPath Analysis: Rhizobium etli CFN 42



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 61.61 STD DEV: 3.19
Rhizobium etli CFN 42, complete genome - 1..4381608
4035 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1539	 60.22	0	1652463..1652927	-	154	86357208	rplM	RHE_CH01571	-	50S ribosomal protein L13
1540	 64.11	0	1653220..1654119	-	299	86357209	-	RHE_CH01572	-	LysR family transcriptional regulator
1541	 60.14	0	1654503..1655330	+	275	86357210	-	RHE_CH01573	-	enoyl-CoA hydratase
1542	 61.18	0	1655331..1656260	-	309	86357211	-	RHE_CH01574	-	putative transporter, permease protein
1543	 43.30	-2	1656255..1656575	+	106	86357212	-	RHE_CH01575	-	hypothetical protein
1544	 63.17	0	1657074..1657502	+	142	86357213	-	RHE_CH01576	-	hypothetical protein
1545	 62.38	0	1657620..1658903	+	427	86357214	-	RHE_CH01577	-	O-acetylhomoserine aminocarboxypropyltransferase
1546	 58.44	0	1659686..1659928	-	80	86357215	-	RHE_CH01578	-	hypothetical protein
1547	 53.85	-2	1660562..1660756	+	64	86357216	-	RHE_CH01579	-	hypothetical protein
1548	 57.31	-1	1661428..1662015	+	195	86357217	-	RHE_CH01580	-	hypothetical protein
1549	 56.08	-1	1662108..1662485	+	125	86357218	-	RHE_CH01581	-	putative glyoxalase protein
1550	 62.18	0	1662765..1663076	+	103	86357219	-	RHE_CH01582	-	hypothetical protein
1551	 57.89	-1	1663264..1663605	+	113	86357220	-	RHE_CH01583	-	hypothetical protein
1552	 59.33	0	1663823..1665949	+	708	86357221	-	RHE_CH01584	-	putative sensory box/GGDEF family protein
1553	 62.73	0	1666011..1667255	-	414	86357222	-	RHE_CH01585	-	cytochrome P450 hydroxylase protein
1554	 63.77	0	1667408..1668754	-	448	86357223	-	RHE_CH01586	-	putative sensory box/GGDEF family protein
1555	 60.63	0	1669050..1669679	+	209	86357224	clpP	RHE_CH01587	-	ATP-dependent Clp protease proteolytic subunit
1556	 60.80	0	1669980..1671257	+	425	86357225	clpX	RHE_CH01588	-	ATP-dependent protease ATP-binding subunit
1557	 60.46	0	1671670..1674087	+	805	86357226	lon	RHE_CH01589	-	ATP-dependent protease LA protein
1558	 60.51	0	1674294..1674569	+	91	86357227	hrm	RHE_CH01590	-	nucleoid DNA-binding protein
1559	 64.08	0	1674987..1675682	+	231	86357228	-	RHE_CH01591	-	putative permease protein
1560	 61.71	0	1675924..1678122	+	732	86357229	-	RHE_CH01592	-	putative alkaline phosphatase protein
1561	 63.73	0	1678232..1679218	-	328	86357230	-	RHE_CH01593	-	oxidoreductase protein
1562	 62.09	0	1679307..1679765	+	152	86357231	-	RHE_CH01594	-	hypothetical protein
1563	 59.69	0	1679771..1680487	-	238	86357232	-	RHE_CH01595	-	hypothetical protein
1564	 60.88	0	1680542..1680904	+	120	86357233	-	RHE_CH01596	-	hypothetical protein
1565	 60.11	0	1681033..1681581	+	182	86357234	btuE	RHE_CH01597	-	glutathione peroxidase protein
1566	 57.59	-1	1681879..1682418	-	179	86357235	-	RHE_CH01598	-	hypothetical protein
1567	 54.64	-2	1683077..1683442	+	121	86357236	nuoA1	RHE_CH01602	-	NADH dehydrogenase subunit A
1568	 63.08	0	1683433..1684017	+	194	86357237	nuoB1	RHE_CH01603	-	NADH dehydrogenase subunit B
1569	 61.03	0	1684036..1684638	+	200	86357238	nuoC1	RHE_CH01604	-	NADH dehydrogenase subunit C
1570	 53.57	-2	1684736..1685071	+	111	86357239	-	RHE_CH01605	-	hypothetical protein
1571	 60.29	0	1685131..1686321	+	396	86357240	nuoD1	RHE_CH01606	-	NADH dehydrogenase subunit D
1572	 59.71	0	1686321..1686593	+	90	86357241	-	RHE_CH01607	-	hypothetical protein
1573	 63.73	0	1686610..1687767	+	385	86357242	nuoE1	RHE_CH01608	-	NADH dehydrogenase subunit E
1574	 62.99	0	1687778..1689082	+	434	86357243	nuoF1	RHE_CH01609	-	NADH dehydrogenase I subunit F
1575	 65.10	+1	1689085..1689786	+	233	86357244	-	RHE_CH01610	-	hypothetical protein
1576	 63.40	0	1690010..1692091	+	693	86357245	nuoG1	RHE_CH01611	-	NADH dehydrogenase subunit G
1577	 59.67	0	1692104..1693147	+	347	86357246	nuoH1	RHE_CH01612	-	NADH dehydrogenase subunit H
1578	 59.55	0	1693188..1693679	+	163	86357247	nuoI	RHE_CH01613	-	NADH dehydrogenase subunit I
1579	 59.51	0	1693821..1694435	+	204	86357248	nuoJ	RHE_CH01614	-	NADH dehydrogenase subunit J
1580	 55.66	-1	1694459..1694767	+	102	86357249	nuoK1	RHE_CH01615	-	NADH dehydrogenase subunit K
1581	 61.02	0	1694775..1696775	+	666	86357250	nuoL	RHE_CH01616	-	NADH dehydrogenase subunit L
1582	 59.92	0	1696775..1698286	+	503	86357251	nuoM1	RHE_CH01617	-	NADH dehydrogenase subunit M
1583	 61.48	0	1698305..1699750	+	481	86357252	nuoN1	RHE_CH01618	-	NADH dehydrogenase subunit N
1584	 63.79	0	1699750..1700514	+	254	86357253	birA	RHE_CH01619	-	biotin--[acetyl-CoA carboxylase] synthetase protein
1585	 62.45	0	1700589..1702202	+	537	86357254	-	RHE_CH01620	-	putative metallo-beta-lactamase family protein
1586	 63.95	0	1702205..1702609	+	134	86357255	-	RHE_CH01621	-	putative lactoylglutathione lyase protein
1587	 59.06	0	1702700..1703041	+	113	86357256	-	RHE_CH01622	-	hypothetical protein
1588	 59.86	0	1703629..1704951	+	440	162329642	proS	RHE_CH01623	-	prolyl-tRNA synthetase
1589	 61.61	0	1705126..1706271	+	381	86357258	-	RHE_CH01624	-	lipoprotein ABC transporter, permease protein
1590	 63.60	0	1706286..1706969	+	227	86357259	-	RHE_CH01625	-	lipoprotein ABC transporter, ATP-binding protein
1591	 55.37	-1	1706980..1707864	-	294	86357260	-	RHE_CH01626	-	hypothetical protein
1592	 60.92	0	1707959..1711456	+	1165	86357261	dnaE	RHE_CH01627	-	DNA polymerase III subunit alpha
1593	 62.48	0	1711547..1712836	-	429	86357262	-	RHE_CH01628	-	hypothetical protein
1594	 63.26	0	1713032..1714324	-	430	86357263	dinP	RHE_CH01629	-	DNA polymerase IV
1595	 66.88	+1	1714523..1714987	+	154	86357264	-	RHE_CH01630	-	putative acetyltransferase protein
1596	 61.58	0	1714962..1715630	-	222	86357265	-	RHE_CH01631	-	hypothetical protein
1597	 56.18	-1	1716074..1716445	+	123	86357266	celR1	RHE_CH01632	-	two-component response regulator protein
1598	 62.81	0	1716464..1717837	+	457	86357267	pleD	RHE_CH01633	-	response regulator PleD
1599	 48.21	-2	1718586..1718753	-	55	86357268	rpmG	RHE_CH01634	-	50S ribosomal protein L33
1600	 59.83	0	1718846..1720030	-	394	86357269	-	RHE_CH01635	-	ABC transporter permease
1601	 65.13	+1	1720281..1720736	-	151	86357270	-	RHE_CH01636	-	hypothetical protein
1602	 63.92	0	1720806..1723175	-	789	86357271	rnr	RHE_CH01637	-	exoribonuclease protein
1603	 62.67	0	1723177..1725831	-	884	86357272	topA	RHE_CH01638	-	DNA topoisomerase I
1604	 68.50	+2	1726075..1727217	-	380	86357273	-	RHE_CH01639	-	DNA processing chain A protein
1605	 62.00	0	1727217..1727837	-	206	86357274	-	RHE_CH01640	-	putative glycerol-3-phosphate acyltransferase PlsY
1606	 64.65	0	1727884..1729173	-	429	86357275	-	RHE_CH01641	-	dihydroorotase
1607	 63.01	0	1729170..1730126	-	318	86357276	pyrB	RHE_CH01642	-	aspartate carbamoyltransferase catalytic subunit
1608	 64.14	0	1730305..1731963	+	552	86357277	aidB	RHE_CH01643	-	acyl-CoA dehydrogenase protein
1609	 55.17	-2	1731975..1732487	-	170	86357278	-	RHE_CH01644	-	hypothetical protein
1610	 62.82	0	1732716..1735601	-	961	86357279	rne	RHE_CH01645	-	ribonuclease E protein
1611	 63.12	0	1736299..1737483	+	394	86357280	amiC	RHE_CH01646	-	n-acetylmuramoyl-l-alanine amidase protein
1612	 62.64	0	1737845..1740304	+	819	86357281	mrcA	RHE_CH01647	-	penicillin binding peptidoglycan synthetase protein
1613	 62.33	0	1740569..1741537	+	322	86357282	prfB	RHE_CH01648	-	peptide chain release factor 2
1614	 62.65	0	1741589..1742608	-	339	86357283	-	RHE_CH01649	-	hypothetical protein
1615	 60.52	0	1742641..1743144	-	167	86357284	-	RHE_CH01650	-	hypothetical protein
1616	 61.50	0	1743149..1743922	-	257	86357285	ppnK	RHE_CH01651	-	inorganic polyphosphate/ATP-NAD kinase
1617	 64.90	+1	1744357..1744695	+	112	86357286	-	RHE_CH01653	-	hypothetical protein
1618	 61.90	0	1745212..1745904	-	230	86357287	-	RHE_CH01654	-	putative metalloprotease inhibitor (transcriptional regulator) protein
1619	 63.52	0	1745952..1746842	-	296	86357288	-	RHE_CH01655	-	tRNA/rRNA methyltransferase protein
1620	 61.48	0	1747562..1748737	+	391	86357289	tufB	RHE_CH01658	-	elongation factor Tu
1621	 56.94	-1	1749248..1750141	+	297	86357290	-	RHE_CH01659	-	p nucleoside-diphosphate-sugar epimerase protein
1622	 56.72	-1	1750576..1750776	+	66	86357291	secE	RHE_CH01661	-	preprotein translocase subunit SecE
1623	 58.00	-1	1750794..1751324	+	176	86357292	nusG	RHE_CH01662	-	transcription antitermination protein NusG
1624	 57.18	-1	1751502..1751933	+	143	86357293	rplK	RHE_CH01663	-	50S ribosomal protein L11
1625	 63.53	0	1751938..1752639	+	233	86357294	rplA	RHE_CH01664	-	50S ribosomal protein L1
1626	 58.19	-1	1752970..1753488	+	172	86357295	rplJ	RHE_CH01665	-	50S ribosomal protein L10
1627	 58.59	0	1753545..1753928	+	127	86357296	rplL	RHE_CH01666	-	50S ribosomal protein L7/L12
1628	 61.40	0	1754187..1758326	+	1379	86357297	rpoB	RHE_CH01667	-	DNA-directed RNA polymerase subunit beta
1629	 61.13	0	1758516..1762724	+	1402	86357298	rpoC	RHE_CH01668	-	DNA-directed RNA polymerase subunit beta'
1630	 59.86	0	1762825..1763118	-	97	86357299	-	RHE_CH01669	-	hypothetical protein
1631	 59.14	0	1763615..1763986	+	123	86357300	rpsL	RHE_CH01670	-	30S ribosomal protein S12
1632	 59.66	0	1764065..1764535	+	156	86357301	rpsG	RHE_CH01671	-	30S ribosomal protein S7
1633	 59.43	0	1764565..1766664	+	699	86357302	fusA2	RHE_CH01672	-	elongation factor G
1634	 61.49	0	1766733..1767911	+	392	86357303	tufA	RHE_CH01673	-	elongation factor Tu
1635	 60.84	0	1768218..1768526	+	102	86357304	rpsJ	RHE_CH01674	-	30S ribosomal protein S10
1636	 61.06	0	1768560..1769201	+	213	86357305	rplC	RHE_CH01675	-	50S ribosomal protein L3
1637	 61.19	0	1769215..1769835	+	206	86357306	rplD	RHE_CH01676	-	50S ribosomal protein L4
1638	 56.80	-1	1769832..1770125	+	97	86357307	rplW	RHE_CH01677	-	50S ribosomal protein L23
61.61	MEAN

3.19	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.