IslandPathversion 1.0

IslandPath Analysis: Rhizobium etli CFN 42



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 61.61 STD DEV: 3.19
Rhizobium etli CFN 42, complete genome - 1..4381608
4035 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1495	 62.32	0	1604872..1605354	+	160	86357164	nusB	RHE_CH01526	-	transcription antitermination protein NusB
1496	 64.24	0	1605551..1607689	+	712	86357165	hppA	RHE_CH01527	-	membrane-bound proton-translocating pyrophosphatase
1497	 61.68	0	1607987..1608487	-	166	86357166	-	RHE_CH01528	-	hypothetical protein
1498	 60.22	0	1608849..1609298	+	149	86357167	-	RHE_CH01529	-	hypothetical protein
1499	 61.08	0	1609310..1609864	+	184	86357168	-	RHE_CH01530	-	hypothetical protein
1500	 59.73	0	1609988..1611010	+	340	86357169	plsX	RHE_CH01531	-	putative glycerol-3-phosphate acyltransferase PlsX
1501	 63.17	0	1611031..1612002	+	323	162329643	fabH	RHE_CH01532	-	3-oxoacyl-(acyl carrier protein) synthase III
1502	 59.00	0	1612109..1612447	+	112	86357171	ihfA	RHE_CH01533	-	integration host factor subunit alpha
1503	 62.06	0	1612598..1613140	+	180	86357172	-	RHE_CH01534	-	MerR family transcriptional regulator
1504	 62.93	0	1613145..1613492	-	115	86357173	-	RHE_CH01535	-	putative two-component response regulator protein
1505	 60.11	0	1613764..1615410	+	548	86357174	-	RHE_CH01536	-	putative two-component sensor histidine kinase protein
1506	 61.27	0	1615447..1615761	-	104	86357175	-	RHE_CH01537	-	hypothetical protein
1507	 62.61	0	1615933..1616697	+	254	86357176	-	RHE_CH01538	-	hypothetical protein
1508	 58.89	0	1616732..1617091	+	119	86357177	-	RHE_CH01539	-	insertion sequence transposase protein, ISRM11/ISRM2011-2 element
1509	 60.00	0	1617201..1617680	+	159	86357178	-	RHE_CH01540	-	insertion sequence transposase protein, ISRM11/ISRM2011-2 element
1510	 72.22	+2	1617845..1618150	-	101	86357179	-	RHE_CH01541	-	hypothetical protein
1511	 60.35	0	1618113..1620359	+	748	86357180	celA	RHE_CH01542	-	cellulose synthase protein
1512	 63.91	0	1620356..1622788	+	810	86357181	celB	RHE_CH01543	-	cellulose synthase protein
1513	 61.60	0	1622785..1623831	+	348	86357182	celC	RHE_CH01544	-	endoglucanase (glycoside hydrolase) protein
1514	 66.17	+1	1623960..1626179	+	739	86357183	-	RHE_CH01545	-	hypothetical protein
1515	 63.38	0	1626257..1626925	+	222	86357184	-	RHE_CH01546	-	putative 2-deoxyglucose-6-phosphate phosphatase protein
1516	 62.37	0	1627275..1627670	+	131	86357185	-	RHE_CH01548	-	hypothetical protein
1517	 56.56	-1	1628023..1628655	-	210	86357186	-	RHE_CH01549	-	3-demethylubiquinone-9 3-methyltransferase protein
1518	 59.24	0	1629316..1629948	+	210	86357187	-	RHE_CH01550	-	hypothetical protein
1519	 62.59	0	1629993..1630286	-	97	86357188	-	RHE_CH01551	-	hypothetical protein
1520	 61.34	0	1630357..1631538	-	393	86357189	-	RHE_CH01552	-	ROK family transcriptional regulator
1521	 61.38	0	1631898..1633655	+	585	86357190	-	RHE_CH01553	-	hypothetical protein
1522	 60.81	0	1633676..1634290	-	204	86357191	-	RHE_CH01554	-	acetyltransferase protein
1523	 57.70	-1	1634467..1635804	+	445	86357192	-	RHE_CH01555	-	sugar ABC transporter, substrate-binding protein
1524	 55.03	-2	1635930..1636823	+	297	86357193	-	RHE_CH01556	-	sugar ABC transporter, permease protein
1525	 57.07	-1	1636823..1637656	+	277	86357194	-	RHE_CH01557	-	sugar ABC transporter, permease protein
1526	 61.53	0	1637673..1638917	-	414	86357195	-	RHE_CH01558	-	hypothetical protein
1527	 61.61	0	1638914..1640476	-	520	86357196	-	RHE_CH01559	-	glycosyltransferase
1528	 61.05	0	1640522..1641697	-	391	86357197	-	RHE_CH01560	-	glycosyltransferase
1529	 61.46	0	1641701..1642276	-	191	86357198	-	RHE_CH01561	-	polysaccharide export system protein
1530	 62.94	0	1642466..1644640	+	724	86357199	-	RHE_CH01562	-	polysaccharide transporter
1531	 59.30	0	1644704..1645843	-	379	86357200	-	RHE_CH01563	-	hypothetical protein
1532	 61.43	0	1646063..1646272	-	69	86357201	-	RHE_CH01564	-	hypothetical protein
1533	 62.86	0	1646387..1647490	+	367	86357202	-	RHE_CH01565	-	cytochrome-c oxidase protein
1534	 65.40	+1	1647513..1648304	-	263	86357203	-	RHE_CH01566	-	hypothetical protein
1535	 62.81	0	1648309..1649241	-	310	86357204	argC	RHE_CH01567	-	N-acetyl-gamma-glutamyl-phosphate reductase
1536	 63.27	0	1649303..1650331	-	342	86357205	speB1	RHE_CH01568	-	agmatinase
1537	 61.80	0	1650500..1651690	-	396	86357206	floR	RHE_CH01569	-	florfenicol/chloramphenicol resistance transporter protein
1538	 65.17	+1	1651993..1652460	-	155	86357207	rpsI	RHE_CH01570	-	30S ribosomal protein S9
1539	 60.22	0	1652463..1652927	-	154	86357208	rplM	RHE_CH01571	-	50S ribosomal protein L13
1540	 64.11	0	1653220..1654119	-	299	86357209	-	RHE_CH01572	-	LysR family transcriptional regulator
1541	 60.14	0	1654503..1655330	+	275	86357210	-	RHE_CH01573	-	enoyl-CoA hydratase
1542	 61.18	0	1655331..1656260	-	309	86357211	-	RHE_CH01574	-	putative transporter, permease protein
1543	 43.30	-2	1656255..1656575	+	106	86357212	-	RHE_CH01575	-	hypothetical protein
1544	 63.17	0	1657074..1657502	+	142	86357213	-	RHE_CH01576	-	hypothetical protein
1545	 62.38	0	1657620..1658903	+	427	86357214	-	RHE_CH01577	-	O-acetylhomoserine aminocarboxypropyltransferase
1546	 58.44	0	1659686..1659928	-	80	86357215	-	RHE_CH01578	-	hypothetical protein
1547	 53.85	-2	1660562..1660756	+	64	86357216	-	RHE_CH01579	-	hypothetical protein
1548	 57.31	-1	1661428..1662015	+	195	86357217	-	RHE_CH01580	-	hypothetical protein
1549	 56.08	-1	1662108..1662485	+	125	86357218	-	RHE_CH01581	-	putative glyoxalase protein
1550	 62.18	0	1662765..1663076	+	103	86357219	-	RHE_CH01582	-	hypothetical protein
1551	 57.89	-1	1663264..1663605	+	113	86357220	-	RHE_CH01583	-	hypothetical protein
1552	 59.33	0	1663823..1665949	+	708	86357221	-	RHE_CH01584	-	putative sensory box/GGDEF family protein
1553	 62.73	0	1666011..1667255	-	414	86357222	-	RHE_CH01585	-	cytochrome P450 hydroxylase protein
1554	 63.77	0	1667408..1668754	-	448	86357223	-	RHE_CH01586	-	putative sensory box/GGDEF family protein
1555	 60.63	0	1669050..1669679	+	209	86357224	clpP	RHE_CH01587	-	ATP-dependent Clp protease proteolytic subunit
1556	 60.80	0	1669980..1671257	+	425	86357225	clpX	RHE_CH01588	-	ATP-dependent protease ATP-binding subunit
1557	 60.46	0	1671670..1674087	+	805	86357226	lon	RHE_CH01589	-	ATP-dependent protease LA protein
1558	 60.51	0	1674294..1674569	+	91	86357227	hrm	RHE_CH01590	-	nucleoid DNA-binding protein
1559	 64.08	0	1674987..1675682	+	231	86357228	-	RHE_CH01591	-	putative permease protein
1560	 61.71	0	1675924..1678122	+	732	86357229	-	RHE_CH01592	-	putative alkaline phosphatase protein
1561	 63.73	0	1678232..1679218	-	328	86357230	-	RHE_CH01593	-	oxidoreductase protein
1562	 62.09	0	1679307..1679765	+	152	86357231	-	RHE_CH01594	-	hypothetical protein
1563	 59.69	0	1679771..1680487	-	238	86357232	-	RHE_CH01595	-	hypothetical protein
1564	 60.88	0	1680542..1680904	+	120	86357233	-	RHE_CH01596	-	hypothetical protein
1565	 60.11	0	1681033..1681581	+	182	86357234	btuE	RHE_CH01597	-	glutathione peroxidase protein
1566	 57.59	-1	1681879..1682418	-	179	86357235	-	RHE_CH01598	-	hypothetical protein
1567	 54.64	-2	1683077..1683442	+	121	86357236	nuoA1	RHE_CH01602	-	NADH dehydrogenase subunit A
1568	 63.08	0	1683433..1684017	+	194	86357237	nuoB1	RHE_CH01603	-	NADH dehydrogenase subunit B
1569	 61.03	0	1684036..1684638	+	200	86357238	nuoC1	RHE_CH01604	-	NADH dehydrogenase subunit C
1570	 53.57	-2	1684736..1685071	+	111	86357239	-	RHE_CH01605	-	hypothetical protein
1571	 60.29	0	1685131..1686321	+	396	86357240	nuoD1	RHE_CH01606	-	NADH dehydrogenase subunit D
1572	 59.71	0	1686321..1686593	+	90	86357241	-	RHE_CH01607	-	hypothetical protein
1573	 63.73	0	1686610..1687767	+	385	86357242	nuoE1	RHE_CH01608	-	NADH dehydrogenase subunit E
1574	 62.99	0	1687778..1689082	+	434	86357243	nuoF1	RHE_CH01609	-	NADH dehydrogenase I subunit F
1575	 65.10	+1	1689085..1689786	+	233	86357244	-	RHE_CH01610	-	hypothetical protein
1576	 63.40	0	1690010..1692091	+	693	86357245	nuoG1	RHE_CH01611	-	NADH dehydrogenase subunit G
1577	 59.67	0	1692104..1693147	+	347	86357246	nuoH1	RHE_CH01612	-	NADH dehydrogenase subunit H
1578	 59.55	0	1693188..1693679	+	163	86357247	nuoI	RHE_CH01613	-	NADH dehydrogenase subunit I
1579	 59.51	0	1693821..1694435	+	204	86357248	nuoJ	RHE_CH01614	-	NADH dehydrogenase subunit J
1580	 55.66	-1	1694459..1694767	+	102	86357249	nuoK1	RHE_CH01615	-	NADH dehydrogenase subunit K
1581	 61.02	0	1694775..1696775	+	666	86357250	nuoL	RHE_CH01616	-	NADH dehydrogenase subunit L
1582	 59.92	0	1696775..1698286	+	503	86357251	nuoM1	RHE_CH01617	-	NADH dehydrogenase subunit M
1583	 61.48	0	1698305..1699750	+	481	86357252	nuoN1	RHE_CH01618	-	NADH dehydrogenase subunit N
1584	 63.79	0	1699750..1700514	+	254	86357253	birA	RHE_CH01619	-	biotin--[acetyl-CoA carboxylase] synthetase protein
1585	 62.45	0	1700589..1702202	+	537	86357254	-	RHE_CH01620	-	putative metallo-beta-lactamase family protein
1586	 63.95	0	1702205..1702609	+	134	86357255	-	RHE_CH01621	-	putative lactoylglutathione lyase protein
1587	 59.06	0	1702700..1703041	+	113	86357256	-	RHE_CH01622	-	hypothetical protein
1588	 59.86	0	1703629..1704951	+	440	162329642	proS	RHE_CH01623	-	prolyl-tRNA synthetase
1589	 61.61	0	1705126..1706271	+	381	86357258	-	RHE_CH01624	-	lipoprotein ABC transporter, permease protein
1590	 63.60	0	1706286..1706969	+	227	86357259	-	RHE_CH01625	-	lipoprotein ABC transporter, ATP-binding protein
1591	 55.37	-1	1706980..1707864	-	294	86357260	-	RHE_CH01626	-	hypothetical protein
1592	 60.92	0	1707959..1711456	+	1165	86357261	dnaE	RHE_CH01627	-	DNA polymerase III subunit alpha
1593	 62.48	0	1711547..1712836	-	429	86357262	-	RHE_CH01628	-	hypothetical protein
1594	 63.26	0	1713032..1714324	-	430	86357263	dinP	RHE_CH01629	-	DNA polymerase IV
61.61	MEAN

3.19	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.