IslandPathversion 1.0

IslandPath Analysis: Rhizobium etli CFN 42



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 61.61 STD DEV: 3.19
Rhizobium etli CFN 42, complete genome - 1..4381608
4035 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1460	 60.54	0	1562867..1565071	+	734	86357129	ppk	RHE_CH01491	-	polyphosphate kinase
1461	 62.46	0	1565083..1566603	+	506	86357130	ppx2	RHE_CH01492	-	exopolyphosphatase protein
1462	 60.41	0	1566855..1568213	-	452	86357131	-	RHE_CH01493	-	hypothetical protein
1463	 61.30	0	1568320..1569381	-	353	86357132	cyaB	RHE_CH01494	-	adenylate cyclase protein
1464	 62.04	0	1569461..1570606	-	381	86357133	rnd2	RHE_CH01495	-	RNase D protein
1465	 64.08	0	1570736..1572127	-	463	86357134	-	RHE_CH01496	-	metallo-oxidoreductase protein
1466	 61.97	0	1572365..1574173	+	602	86357135	aspS	RHE_CH01497	-	aspartyl-tRNA synthetase
1467	 59.60	0	1574315..1575502	-	395	86357136	-	RHE_CH01498	-	hypothetical protein
1468	 61.26	0	1575738..1577993	+	751	86357137	parC	RHE_CH01499	-	DNA topoisomerase IV subunit A
1469	 61.48	0	1578105..1578779	-	224	86357138	-	RHE_CH01500	-	hypothetical protein
1470	 61.52	0	1578952..1579767	-	271	86357139	-	RHE_CH01501	-	putative permease protein
1471	 60.36	0	1579840..1580616	-	258	162329644	ate	RHE_CH01502	-	arginyl-tRNA-protein transferase
1472	 61.87	0	1580798..1581256	-	152	86357141	-	RHE_CH01503	-	hypothetical protein
1473	 62.33	0	1581331..1582344	-	337	86357142	hemB	RHE_CH01504	-	delta-aminolevulinic acid dehydratase
1474	 60.19	0	1582390..1582914	+	174	86357143	-	RHE_CH01505	-	hypothetical protein
1475	 58.33	-1	1583044..1583559	+	171	86357144	-	RHE_CH01506	-	MarR family transcriptional regulator
1476	 62.21	0	1583995..1585296	+	433	86357145	-	RHE_CH01507	-	putative peptidoglycan binding protein (involved in cell wall degradation)
1477	 61.51	0	1585515..1586813	+	432	86357146	glyA	RHE_CH01508	-	serine hydroxymethyltransferase
1478	 61.64	0	1586823..1587299	+	158	86357147	-	RHE_CH01509	-	transcriptional regulator NrdR
1479	 64.98	+1	1587303..1588610	+	435	86357148	ribD	RHE_CH01510	-	5-amino-6-(5-phosphoribosylamino)uracil reductase/diaminohydroxyphosphoribosylaminopyrimidinedeaminase protein
1480	 62.25	0	1588610..1589221	+	203	86357149	ribE	RHE_CH01511	-	riboflavin synthase subunit alpha
1481	 59.43	0	1589340..1590209	-	289	86357150	-	RHE_CH01512	-	glucose-1-phosphate thymidylyltransferase protein
1482	 62.61	0	1590219..1591106	-	295	86357151	rfbD	RHE_CH01513	-	dTDP-4-dehydrorhamnose reductase protein
1483	 59.85	0	1591110..1592165	-	351	86357152	rffB	RHE_CH01514	-	dTDP-glucose-4,6-dehydratase protein
1484	 59.07	0	1592172..1592750	-	192	86357153	-	RHE_CH01515	-	dTDP-rhamnose-3,5-epimerase protein
1485	 60.50	0	1592740..1594587	-	615	86357154	-	RHE_CH01516	-	hypothetical protein
1486	 56.42	-1	1594870..1596030	+	386	86357155	-	RHE_CH01517	-	putative nucleotide sugar transaminase protein
1487	 59.26	0	1596248..1597462	-	404	86357156	-	RHE_CH01518	-	putative oxidoreductase protein
1488	 58.12	-1	1597459..1598652	-	397	86357157	-	RHE_CH01519	-	putative carbamoyl-phosphate-synthetase protein
1489	 55.58	-1	1598817..1601189	-	790	86357158	-	RHE_CH01520	-	putative beta-D-1,6 glucosyltransferase protein
1490	 54.74	-2	1601297..1602193	-	298	86357159	-	RHE_CH01521	-	putative glucosyltransferase protein
1491	 62.21	0	1602486..1603001	-	171	86357160	-	RHE_CH01522	-	putative acetyltransferase protein
1492	 61.31	0	1603026..1603529	-	167	86357161	-	RHE_CH01523	-	hypothetical protein
1493	 63.33	0	1603707..1604066	-	119	86357162	-	RHE_CH01524	-	hypothetical protein
1494	 60.09	0	1604413..1604868	+	151	86357163	ribH	RHE_CH01525	-	riboflavin synthase subunit beta
1495	 62.32	0	1604872..1605354	+	160	86357164	nusB	RHE_CH01526	-	transcription antitermination protein NusB
1496	 64.24	0	1605551..1607689	+	712	86357165	hppA	RHE_CH01527	-	membrane-bound proton-translocating pyrophosphatase
1497	 61.68	0	1607987..1608487	-	166	86357166	-	RHE_CH01528	-	hypothetical protein
1498	 60.22	0	1608849..1609298	+	149	86357167	-	RHE_CH01529	-	hypothetical protein
1499	 61.08	0	1609310..1609864	+	184	86357168	-	RHE_CH01530	-	hypothetical protein
1500	 59.73	0	1609988..1611010	+	340	86357169	plsX	RHE_CH01531	-	putative glycerol-3-phosphate acyltransferase PlsX
1501	 63.17	0	1611031..1612002	+	323	162329643	fabH	RHE_CH01532	-	3-oxoacyl-(acyl carrier protein) synthase III
1502	 59.00	0	1612109..1612447	+	112	86357171	ihfA	RHE_CH01533	-	integration host factor subunit alpha
1503	 62.06	0	1612598..1613140	+	180	86357172	-	RHE_CH01534	-	MerR family transcriptional regulator
1504	 62.93	0	1613145..1613492	-	115	86357173	-	RHE_CH01535	-	putative two-component response regulator protein
1505	 60.11	0	1613764..1615410	+	548	86357174	-	RHE_CH01536	-	putative two-component sensor histidine kinase protein
1506	 61.27	0	1615447..1615761	-	104	86357175	-	RHE_CH01537	-	hypothetical protein
1507	 62.61	0	1615933..1616697	+	254	86357176	-	RHE_CH01538	-	hypothetical protein
1508	 58.89	0	1616732..1617091	+	119	86357177	-	RHE_CH01539	-	insertion sequence transposase protein, ISRM11/ISRM2011-2 element
1509	 60.00	0	1617201..1617680	+	159	86357178	-	RHE_CH01540	-	insertion sequence transposase protein, ISRM11/ISRM2011-2 element
1510	 72.22	+2	1617845..1618150	-	101	86357179	-	RHE_CH01541	-	hypothetical protein
1511	 60.35	0	1618113..1620359	+	748	86357180	celA	RHE_CH01542	-	cellulose synthase protein
1512	 63.91	0	1620356..1622788	+	810	86357181	celB	RHE_CH01543	-	cellulose synthase protein
1513	 61.60	0	1622785..1623831	+	348	86357182	celC	RHE_CH01544	-	endoglucanase (glycoside hydrolase) protein
1514	 66.17	+1	1623960..1626179	+	739	86357183	-	RHE_CH01545	-	hypothetical protein
1515	 63.38	0	1626257..1626925	+	222	86357184	-	RHE_CH01546	-	putative 2-deoxyglucose-6-phosphate phosphatase protein
1516	 62.37	0	1627275..1627670	+	131	86357185	-	RHE_CH01548	-	hypothetical protein
1517	 56.56	-1	1628023..1628655	-	210	86357186	-	RHE_CH01549	-	3-demethylubiquinone-9 3-methyltransferase protein
1518	 59.24	0	1629316..1629948	+	210	86357187	-	RHE_CH01550	-	hypothetical protein
1519	 62.59	0	1629993..1630286	-	97	86357188	-	RHE_CH01551	-	hypothetical protein
1520	 61.34	0	1630357..1631538	-	393	86357189	-	RHE_CH01552	-	ROK family transcriptional regulator
1521	 61.38	0	1631898..1633655	+	585	86357190	-	RHE_CH01553	-	hypothetical protein
1522	 60.81	0	1633676..1634290	-	204	86357191	-	RHE_CH01554	-	acetyltransferase protein
1523	 57.70	-1	1634467..1635804	+	445	86357192	-	RHE_CH01555	-	sugar ABC transporter, substrate-binding protein
1524	 55.03	-2	1635930..1636823	+	297	86357193	-	RHE_CH01556	-	sugar ABC transporter, permease protein
1525	 57.07	-1	1636823..1637656	+	277	86357194	-	RHE_CH01557	-	sugar ABC transporter, permease protein
1526	 61.53	0	1637673..1638917	-	414	86357195	-	RHE_CH01558	-	hypothetical protein
1527	 61.61	0	1638914..1640476	-	520	86357196	-	RHE_CH01559	-	glycosyltransferase
1528	 61.05	0	1640522..1641697	-	391	86357197	-	RHE_CH01560	-	glycosyltransferase
1529	 61.46	0	1641701..1642276	-	191	86357198	-	RHE_CH01561	-	polysaccharide export system protein
1530	 62.94	0	1642466..1644640	+	724	86357199	-	RHE_CH01562	-	polysaccharide transporter
1531	 59.30	0	1644704..1645843	-	379	86357200	-	RHE_CH01563	-	hypothetical protein
1532	 61.43	0	1646063..1646272	-	69	86357201	-	RHE_CH01564	-	hypothetical protein
1533	 62.86	0	1646387..1647490	+	367	86357202	-	RHE_CH01565	-	cytochrome-c oxidase protein
1534	 65.40	+1	1647513..1648304	-	263	86357203	-	RHE_CH01566	-	hypothetical protein
1535	 62.81	0	1648309..1649241	-	310	86357204	argC	RHE_CH01567	-	N-acetyl-gamma-glutamyl-phosphate reductase
1536	 63.27	0	1649303..1650331	-	342	86357205	speB1	RHE_CH01568	-	agmatinase
1537	 61.80	0	1650500..1651690	-	396	86357206	floR	RHE_CH01569	-	florfenicol/chloramphenicol resistance transporter protein
1538	 65.17	+1	1651993..1652460	-	155	86357207	rpsI	RHE_CH01570	-	30S ribosomal protein S9
1539	 60.22	0	1652463..1652927	-	154	86357208	rplM	RHE_CH01571	-	50S ribosomal protein L13
1540	 64.11	0	1653220..1654119	-	299	86357209	-	RHE_CH01572	-	LysR family transcriptional regulator
1541	 60.14	0	1654503..1655330	+	275	86357210	-	RHE_CH01573	-	enoyl-CoA hydratase
1542	 61.18	0	1655331..1656260	-	309	86357211	-	RHE_CH01574	-	putative transporter, permease protein
1543	 43.30	-2	1656255..1656575	+	106	86357212	-	RHE_CH01575	-	hypothetical protein
1544	 63.17	0	1657074..1657502	+	142	86357213	-	RHE_CH01576	-	hypothetical protein
1545	 62.38	0	1657620..1658903	+	427	86357214	-	RHE_CH01577	-	O-acetylhomoserine aminocarboxypropyltransferase
1546	 58.44	0	1659686..1659928	-	80	86357215	-	RHE_CH01578	-	hypothetical protein
1547	 53.85	-2	1660562..1660756	+	64	86357216	-	RHE_CH01579	-	hypothetical protein
1548	 57.31	-1	1661428..1662015	+	195	86357217	-	RHE_CH01580	-	hypothetical protein
1549	 56.08	-1	1662108..1662485	+	125	86357218	-	RHE_CH01581	-	putative glyoxalase protein
1550	 62.18	0	1662765..1663076	+	103	86357219	-	RHE_CH01582	-	hypothetical protein
1551	 57.89	-1	1663264..1663605	+	113	86357220	-	RHE_CH01583	-	hypothetical protein
1552	 59.33	0	1663823..1665949	+	708	86357221	-	RHE_CH01584	-	putative sensory box/GGDEF family protein
1553	 62.73	0	1666011..1667255	-	414	86357222	-	RHE_CH01585	-	cytochrome P450 hydroxylase protein
1554	 63.77	0	1667408..1668754	-	448	86357223	-	RHE_CH01586	-	putative sensory box/GGDEF family protein
1555	 60.63	0	1669050..1669679	+	209	86357224	clpP	RHE_CH01587	-	ATP-dependent Clp protease proteolytic subunit
1556	 60.80	0	1669980..1671257	+	425	86357225	clpX	RHE_CH01588	-	ATP-dependent protease ATP-binding subunit
1557	 60.46	0	1671670..1674087	+	805	86357226	lon	RHE_CH01589	-	ATP-dependent protease LA protein
1558	 60.51	0	1674294..1674569	+	91	86357227	hrm	RHE_CH01590	-	nucleoid DNA-binding protein
1559	 64.08	0	1674987..1675682	+	231	86357228	-	RHE_CH01591	-	putative permease protein
61.61	MEAN

3.19	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.