IslandPathversion 1.0

IslandPath Analysis: Rhizobium etli CFN 42



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 61.61 STD DEV: 3.19
Rhizobium etli CFN 42, complete genome - 1..4381608
4035 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1414	 64.69	0	1515071..1516333	+	420	86357083	fabF1	RHE_CH01445	-	3-oxoacyl-(acyl carrier protein) synthase II
1415	 60.40	0	1516628..1517680	+	350	86357084	-	RHE_CH01446	-	hypothetical protein
1416	 66.10	+1	1517700..1518587	+	295	86357085	-	RHE_CH01447	-	hypothetical protein
1417	 64.40	0	1518591..1519253	+	220	86357086	gmk	RHE_CH01448	-	guanylate kinase
1418	 63.77	0	1519250..1520077	-	275	86357087	ksgA	RHE_CH01449	-	dimethyladenosine transferase
1419	 64.43	0	1520077..1521105	-	342	86357088	pdxA	RHE_CH01450	-	4-hydroxythreonine-4-phosphate dehydrogenase
1420	 61.27	0	1521112..1522056	-	314	86357089	-	RHE_CH01451	-	peptidyl-prolyl cis-trans isomerase protein
1421	 59.24	0	1522241..1524571	-	776	86357090	-	RHE_CH01452	-	putative organic solvent tolerance protein OstA
1422	 58.40	-1	1524571..1525659	-	362	86357091	-	RHE_CH01453	-	putative permease protein
1423	 61.34	0	1525656..1526837	-	393	86357092	-	RHE_CH01454	-	putative permease protein
1424	 60.34	0	1526937..1527710	-	257	86357093	-	RHE_CH01455	-	putative phosphatase protein
1425	 62.38	0	1527854..1529347	+	497	86357094	pepA	RHE_CH01456	-	leucyl aminopeptidase
1426	 61.56	0	1529344..1529793	+	149	86357095	-	RHE_CH01457	-	DNA polymerase III subunit chi
1427	 61.92	0	1529839..1530765	-	308	86357096	gal	RHE_CH01458	-	D-galactose-1-dehydrogenase protein
1428	 63.53	0	1530863..1532905	-	680	86357097	-	RHE_CH01459	-	putative peptidase protein
1429	 64.44	0	1533010..1534314	-	434	86357098	-	RHE_CH01460	-	putative monooxygenase protein
1430	 66.08	+1	1534329..1535687	-	452	86357099	-	RHE_CH01461	-	hypothetical protein
1431	 62.03	0	1535684..1536481	-	265	86357100	-	RHE_CH01462	-	amino acid ABC transporter ATP-binding protein
1432	 60.66	0	1536486..1537268	-	260	86357101	-	RHE_CH01463	-	amino acid ABC transporter permease
1433	 59.44	0	1537274..1538020	-	248	86357102	-	RHE_CH01464	-	amino acid ABC transporter permease
1434	 60.25	0	1538045..1538839	-	264	86357103	-	RHE_CH01465	-	amino acid ABC transporter substrate-binding protein
1435	 61.71	0	1538983..1539567	-	194	86357104	-	RHE_CH01466	-	TetR family transcriptional regulator
1436	 62.35	0	1539717..1540388	-	223	86357105	-	RHE_CH01467	-	putative polysaccharide deacetylase protein
1437	 62.79	0	1540680..1542563	-	627	86357106	-	RHE_CH01468	-	putative ABC transporter, ATP-binding protein
1438	 63.97	0	1542684..1543646	-	320	86357107	-	RHE_CH01469	-	hypothetical protein
1439	 63.14	0	1543875..1544384	-	169	86357108	-	RHE_CH01470	-	hypothetical protein
1440	 62.86	0	1544614..1545138	+	174	86357109	ligE	RHE_CH01471	-	beta-aryl ether cleaving enzyme, lignin degradation protein
1441	 61.47	0	1545220..1545642	+	140	86357110	ndk	RHE_CH01472	-	nucleoside diphosphate kinase
1442	 60.71	0	1545726..1546229	-	167	86357111	-	RHE_CH01473	-	hypothetical protein
1443	 64.84	+1	1546226..1546771	-	181	86357112	-	RHE_CH01474	-	hypothetical protein
1444	 62.88	0	1546836..1547732	+	298	86357113	-	RHE_CH01475	-	branched chain amino acid ABC transporter permease
1445	 64.72	0	1547734..1548195	-	153	86357114	moaE	RHE_CH01476	-	molybdopterin converting factor subunit 2 protein
1446	 58.04	-1	1548454..1548708	-	84	86357115	moaD	RHE_CH01477	-	molybdopterin converting factor subunit 1 protein
1447	 60.74	0	1548705..1549295	-	196	86357116	pgsAch	RHE_CH01478	-	CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase protein
1448	 63.04	0	1549459..1551498	-	679	86357117	uvrC	RHE_CH01479	-	excinuclease ABC subunit C
1449	 62.24	0	1551495..1552262	-	255	86357118	-	RHE_CH01480	-	short chain dehydrogenase
1450	 60.69	0	1552627..1553262	+	211	86357119	ropB1	RHE_CH01481	-	outer membrane protein
1451	 58.79	0	1553346..1553942	-	198	86357120	gstch7	RHE_CH01482	-	glutathione S-transferase protein
1452	 62.30	0	1553999..1554868	-	289	86357121	-	RHE_CH01483	-	putative DNA methylase protein
1453	 64.05	0	1554951..1557089	+	712	86357122	-	RHE_CH01484	-	anaerobic dehydrogenase protein
1454	 59.39	0	1557086..1557676	+	196	86357123	-	RHE_CH01485	-	putative ADP-ribose pyrophosphatase protein
1455	 64.96	+1	1557821..1558990	+	389	86357124	phnM2	RHE_CH01486	-	phosphonate metabolism protein
1456	 65.92	+1	1558987..1559658	-	223	162329645	purN	RHE_CH01487	-	phosphoribosylglycinamide formyltransferase
1457	 65.55	+1	1559655..1560728	-	357	86357126	purM	RHE_CH01488	-	phosphoribosylaminoimidazole synthetase
1458	 59.56	0	1560972..1562096	+	374	86357127	-	RHE_CH01489	-	putative permease protein
1459	 62.18	0	1562089..1562802	+	237	86357128	-	RHE_CH01490	-	hypothetical protein
1460	 60.54	0	1562867..1565071	+	734	86357129	ppk	RHE_CH01491	-	polyphosphate kinase
1461	 62.46	0	1565083..1566603	+	506	86357130	ppx2	RHE_CH01492	-	exopolyphosphatase protein
1462	 60.41	0	1566855..1568213	-	452	86357131	-	RHE_CH01493	-	hypothetical protein
1463	 61.30	0	1568320..1569381	-	353	86357132	cyaB	RHE_CH01494	-	adenylate cyclase protein
1464	 62.04	0	1569461..1570606	-	381	86357133	rnd2	RHE_CH01495	-	RNase D protein
1465	 64.08	0	1570736..1572127	-	463	86357134	-	RHE_CH01496	-	metallo-oxidoreductase protein
1466	 61.97	0	1572365..1574173	+	602	86357135	aspS	RHE_CH01497	-	aspartyl-tRNA synthetase
1467	 59.60	0	1574315..1575502	-	395	86357136	-	RHE_CH01498	-	hypothetical protein
1468	 61.26	0	1575738..1577993	+	751	86357137	parC	RHE_CH01499	-	DNA topoisomerase IV subunit A
1469	 61.48	0	1578105..1578779	-	224	86357138	-	RHE_CH01500	-	hypothetical protein
1470	 61.52	0	1578952..1579767	-	271	86357139	-	RHE_CH01501	-	putative permease protein
1471	 60.36	0	1579840..1580616	-	258	162329644	ate	RHE_CH01502	-	arginyl-tRNA-protein transferase
1472	 61.87	0	1580798..1581256	-	152	86357141	-	RHE_CH01503	-	hypothetical protein
1473	 62.33	0	1581331..1582344	-	337	86357142	hemB	RHE_CH01504	-	delta-aminolevulinic acid dehydratase
1474	 60.19	0	1582390..1582914	+	174	86357143	-	RHE_CH01505	-	hypothetical protein
1475	 58.33	-1	1583044..1583559	+	171	86357144	-	RHE_CH01506	-	MarR family transcriptional regulator
1476	 62.21	0	1583995..1585296	+	433	86357145	-	RHE_CH01507	-	putative peptidoglycan binding protein (involved in cell wall degradation)
1477	 61.51	0	1585515..1586813	+	432	86357146	glyA	RHE_CH01508	-	serine hydroxymethyltransferase
1478	 61.64	0	1586823..1587299	+	158	86357147	-	RHE_CH01509	-	transcriptional regulator NrdR
1479	 64.98	+1	1587303..1588610	+	435	86357148	ribD	RHE_CH01510	-	5-amino-6-(5-phosphoribosylamino)uracil reductase/diaminohydroxyphosphoribosylaminopyrimidinedeaminase protein
1480	 62.25	0	1588610..1589221	+	203	86357149	ribE	RHE_CH01511	-	riboflavin synthase subunit alpha
1481	 59.43	0	1589340..1590209	-	289	86357150	-	RHE_CH01512	-	glucose-1-phosphate thymidylyltransferase protein
1482	 62.61	0	1590219..1591106	-	295	86357151	rfbD	RHE_CH01513	-	dTDP-4-dehydrorhamnose reductase protein
1483	 59.85	0	1591110..1592165	-	351	86357152	rffB	RHE_CH01514	-	dTDP-glucose-4,6-dehydratase protein
1484	 59.07	0	1592172..1592750	-	192	86357153	-	RHE_CH01515	-	dTDP-rhamnose-3,5-epimerase protein
1485	 60.50	0	1592740..1594587	-	615	86357154	-	RHE_CH01516	-	hypothetical protein
1486	 56.42	-1	1594870..1596030	+	386	86357155	-	RHE_CH01517	-	putative nucleotide sugar transaminase protein
1487	 59.26	0	1596248..1597462	-	404	86357156	-	RHE_CH01518	-	putative oxidoreductase protein
1488	 58.12	-1	1597459..1598652	-	397	86357157	-	RHE_CH01519	-	putative carbamoyl-phosphate-synthetase protein
1489	 55.58	-1	1598817..1601189	-	790	86357158	-	RHE_CH01520	-	putative beta-D-1,6 glucosyltransferase protein
1490	 54.74	-2	1601297..1602193	-	298	86357159	-	RHE_CH01521	-	putative glucosyltransferase protein
1491	 62.21	0	1602486..1603001	-	171	86357160	-	RHE_CH01522	-	putative acetyltransferase protein
1492	 61.31	0	1603026..1603529	-	167	86357161	-	RHE_CH01523	-	hypothetical protein
1493	 63.33	0	1603707..1604066	-	119	86357162	-	RHE_CH01524	-	hypothetical protein
1494	 60.09	0	1604413..1604868	+	151	86357163	ribH	RHE_CH01525	-	riboflavin synthase subunit beta
1495	 62.32	0	1604872..1605354	+	160	86357164	nusB	RHE_CH01526	-	transcription antitermination protein NusB
1496	 64.24	0	1605551..1607689	+	712	86357165	hppA	RHE_CH01527	-	membrane-bound proton-translocating pyrophosphatase
1497	 61.68	0	1607987..1608487	-	166	86357166	-	RHE_CH01528	-	hypothetical protein
1498	 60.22	0	1608849..1609298	+	149	86357167	-	RHE_CH01529	-	hypothetical protein
1499	 61.08	0	1609310..1609864	+	184	86357168	-	RHE_CH01530	-	hypothetical protein
1500	 59.73	0	1609988..1611010	+	340	86357169	plsX	RHE_CH01531	-	putative glycerol-3-phosphate acyltransferase PlsX
1501	 63.17	0	1611031..1612002	+	323	162329643	fabH	RHE_CH01532	-	3-oxoacyl-(acyl carrier protein) synthase III
1502	 59.00	0	1612109..1612447	+	112	86357171	ihfA	RHE_CH01533	-	integration host factor subunit alpha
1503	 62.06	0	1612598..1613140	+	180	86357172	-	RHE_CH01534	-	MerR family transcriptional regulator
1504	 62.93	0	1613145..1613492	-	115	86357173	-	RHE_CH01535	-	putative two-component response regulator protein
1505	 60.11	0	1613764..1615410	+	548	86357174	-	RHE_CH01536	-	putative two-component sensor histidine kinase protein
1506	 61.27	0	1615447..1615761	-	104	86357175	-	RHE_CH01537	-	hypothetical protein
1507	 62.61	0	1615933..1616697	+	254	86357176	-	RHE_CH01538	-	hypothetical protein
1508	 58.89	0	1616732..1617091	+	119	86357177	-	RHE_CH01539	-	insertion sequence transposase protein, ISRM11/ISRM2011-2 element
1509	 60.00	0	1617201..1617680	+	159	86357178	-	RHE_CH01540	-	insertion sequence transposase protein, ISRM11/ISRM2011-2 element
1510	 72.22	+2	1617845..1618150	-	101	86357179	-	RHE_CH01541	-	hypothetical protein
1511	 60.35	0	1618113..1620359	+	748	86357180	celA	RHE_CH01542	-	cellulose synthase protein
1512	 63.91	0	1620356..1622788	+	810	86357181	celB	RHE_CH01543	-	cellulose synthase protein
1513	 61.60	0	1622785..1623831	+	348	86357182	celC	RHE_CH01544	-	endoglucanase (glycoside hydrolase) protein
61.61	MEAN

3.19	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.