IslandPathversion 1.0

IslandPath Analysis: Rhizobium etli CFN 42



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 61.61 STD DEV: 3.19
Rhizobium etli CFN 42, complete genome - 1..4381608
4035 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1354	 61.61	0	1459317..1461551	+	744	86357023	relA	RHE_CH01385	-	guanosine-3`,5`-bis(diphosphate) 3`-pyrophosphohydrolase protein
1355	 53.33	-2	1461749..1461898	+	49	86357024	-	RHE_CH01386	-	hypothetical protein
1356	 62.61	0	1462054..1462644	+	196	86357025	-	RHE_CH01387	-	hypothetical protein
1357	 62.47	0	1462682..1463086	+	134	86357026	acpS	RHE_CH01388	-	4'-phosphopantetheinyl transferase
1358	 56.59	-1	1463267..1464010	+	247	86357027	lepB	RHE_CH01389	-	signal peptidase I protein
1359	 62.08	0	1464007..1464726	+	239	86357028	rnc	RHE_CH01390	-	ribonuclease III
1360	 60.19	0	1464734..1465675	+	313	86357029	era	RHE_CH01391	-	GTP-binding protein Era
1361	 58.83	0	1465826..1466578	+	250	86357030	-	RHE_CH01392	-	CRP family transcriptional regulator
1362	 56.21	-1	1466603..1467166	+	187	86357031	-	RHE_CH01393	-	putative two-component response regulator protein
1363	 66.54	+1	1467316..1468086	+	256	86357032	recO	RHE_CH01394	-	DNA repair protein RecO
1364	 64.36	0	1468188..1469183	+	331	86357033	-	RHE_CH01395	-	putative oxidoreductase protein
1365	 65.50	+1	1469358..1470215	-	285	86357034	-	RHE_CH01396	-	hypothetical protein
1366	 62.79	0	1470226..1470870	-	214	86357035	-	RHE_CH01397	-	putative metal-dependent phosphohydrolase protein
1367	 60.52	0	1471017..1472921	-	634	86357036	-	RHE_CH01398	-	putative signal-transducer protein
1368	 58.77	0	1473343..1473684	+	113	86357037	-	RHE_CH01399	-	hypothetical protein
1369	 60.47	0	1473808..1474323	+	171	86357038	sodC	RHE_CH01400	-	superoxide dismutase protein
1370	 60.20	0	1474351..1475232	-	293	86357039	-	RHE_CH01401	-	putative mechanosensitive ion channel protein
1371	 66.48	+1	1475292..1475822	-	176	86357040	-	RHE_CH01402	-	putative tyrosine phosphatase protein
1372	 62.65	0	1475819..1476391	-	190	86357041	-	RHE_CH01403	-	putative hydrolase protein
1373	 66.78	+1	1476421..1477266	-	281	86357042	-	RHE_CH01404	-	putative aminomethyltransferase protein (glycine cleavage)
1374	 62.02	0	1477357..1478259	-	300	86357043	-	RHE_CH01405	-	hypothetical protein
1375	 62.35	0	1478490..1478906	-	138	86357044	-	RHE_CH01406	-	hypothetical protein
1376	 63.28	0	1478965..1479525	-	186	86357045	-	RHE_CH01407	-	ADP-ribose phosphorylase
1377	 60.56	0	1479526..1479885	+	119	86357046	-	RHE_CH01408	-	hypothetical protein
1378	 62.53	0	1479894..1480715	+	273	86357047	-	RHE_CH01409	-	hypothetical protein
1379	 62.06	0	1481297..1482142	-	281	86357048	pssA1	RHE_CH01410	-	CDP-diacylglycerol-serine O-phosphatidyltransferase protein
1380	 63.81	0	1482198..1482896	-	232	86357049	psd	RHE_CH01411	-	phosphatidylserine decarboxylase
1381	 56.83	-1	1483268..1483582	+	104	86357050	-	RHE_CH01412	-	ArsR family transcriptional regulator
1382	 59.44	0	1483579..1483938	+	119	86357051	-	RHE_CH01413	-	hypothetical protein
1383	 57.96	-1	1483984..1484592	+	202	86357052	clpP	RHE_CH01414	-	ATP-dependent Clp protease proteolytic subunit
1384	 61.77	0	1484819..1486696	-	625	86357053	-	RHE_CH01415	-	putative ABC transporter, ATP-binding protein
1385	 66.47	+1	1486906..1488957	-	683	86357054	-	RHE_CH01416	-	peptidoglycan binding protein
1386	 59.46	0	1489115..1489738	+	207	86357055	-	RHE_CH01417	-	hypothetical protein
1387	 62.40	0	1489754..1490668	-	304	86357056	-	RHE_CH01418	-	hypothetical protein
1388	 62.21	0	1490876..1492489	-	537	86357057	leuA1	RHE_CH01419	-	alpha-isopropylmalate/homocitrate synthase family transferase
1389	 62.62	0	1492666..1493628	-	320	86357058	pipch1	RHE_CH01420	-	proline iminopeptidase protein
1390	 61.43	0	1493625..1494101	-	158	86357059	-	RHE_CH01421	-	hypothetical protein
1391	 62.35	0	1494091..1494576	-	161	86357060	-	RHE_CH01422	-	hypothetical protein
1392	 60.62	0	1494582..1495061	-	159	86357061	-	RHE_CH01423	-	hypothetical protein
1393	 63.09	0	1495058..1495672	-	204	86357062	-	RHE_CH01424	-	hypothetical protein
1394	 62.16	0	1495674..1497050	-	458	86357063	cysS	RHE_CH01425	-	cysteinyl-tRNA synthetase
1395	 57.20	-1	1497373..1498122	+	249	86357064	-	RHE_CH01426	-	glycosyl hydrolase, lysozyme protein
1396	 66.40	+1	1498132..1498872	-	246	86357065	-	RHE_CH01427	-	oxidoreductase protein
1397	 61.64	0	1498951..1500441	-	496	86357066	purF	RHE_CH01428	-	amidophosphoribosyltransferase
1398	 62.78	0	1500669..1501286	-	205	86357067	cvpA	RHE_CH01429	-	colicin V production protein
1399	 66.95	+1	1501377..1502777	-	466	86357068	radA	RHE_CH01430	-	DNA repair protein RadA
1400	 61.11	0	1502878..1503579	+	233	86357069	-	RHE_CH01431	-	LysE family amino acid efflux protein
1401	 63.67	0	1503589..1504590	-	333	86357070	alr	RHE_CH01432	-	alanine racemase protein
1402	 63.99	0	1504940..1505761	+	273	86357071	-	RHE_CH01433	-	AraC family transcriptional regulator
1403	 63.61	0	1505830..1506549	+	239	86357072	azlC	RHE_CH01434	-	branched-chain amino acid transporter protein (azaleucine resistance)
1404	 65.35	+1	1506546..1506848	+	100	86357073	-	RHE_CH01435	-	hypothetical protein
1405	 61.06	0	1506873..1508369	-	498	86357074	dnaB	RHE_CH01436	-	replicative DNA helicase
1406	 62.69	0	1508722..1509300	-	192	86357075	rplI	RHE_CH01437	-	50S ribosomal protein L9
1407	 62.53	0	1509323..1510072	-	249	86357076	-	RHE_CH01438	-	hypothetical protein
1408	 64.66	0	1510466..1510714	-	82	86357077	rpsR	RHE_CH01439	-	30S ribosomal protein S18
1409	 62.09	0	1510727..1511185	-	152	86357078	rpsF	RHE_CH01440	-	30S ribosomal protein S6
1410	 60.15	0	1511489..1512532	-	347	86357079	-	RHE_CH01441	-	putative oxidoreductase protein
1411	 66.04	+1	1512737..1513687	+	316	86357080	fabD	RHE_CH01442	-	[acyl-carrier protein] S-malonyltransferase protein
1412	 63.96	0	1513717..1514454	+	245	86357081	fabG2	RHE_CH01443	-	3-ketoacyl-(acyl-carrier-protein) reductase NodG
1413	 53.59	-2	1514741..1514977	+	78	86357082	acpP	RHE_CH01444	-	acyl carrier protein
1414	 64.69	0	1515071..1516333	+	420	86357083	fabF1	RHE_CH01445	-	3-oxoacyl-(acyl carrier protein) synthase II
1415	 60.40	0	1516628..1517680	+	350	86357084	-	RHE_CH01446	-	hypothetical protein
1416	 66.10	+1	1517700..1518587	+	295	86357085	-	RHE_CH01447	-	hypothetical protein
1417	 64.40	0	1518591..1519253	+	220	86357086	gmk	RHE_CH01448	-	guanylate kinase
1418	 63.77	0	1519250..1520077	-	275	86357087	ksgA	RHE_CH01449	-	dimethyladenosine transferase
1419	 64.43	0	1520077..1521105	-	342	86357088	pdxA	RHE_CH01450	-	4-hydroxythreonine-4-phosphate dehydrogenase
1420	 61.27	0	1521112..1522056	-	314	86357089	-	RHE_CH01451	-	peptidyl-prolyl cis-trans isomerase protein
1421	 59.24	0	1522241..1524571	-	776	86357090	-	RHE_CH01452	-	putative organic solvent tolerance protein OstA
1422	 58.40	-1	1524571..1525659	-	362	86357091	-	RHE_CH01453	-	putative permease protein
1423	 61.34	0	1525656..1526837	-	393	86357092	-	RHE_CH01454	-	putative permease protein
1424	 60.34	0	1526937..1527710	-	257	86357093	-	RHE_CH01455	-	putative phosphatase protein
1425	 62.38	0	1527854..1529347	+	497	86357094	pepA	RHE_CH01456	-	leucyl aminopeptidase
1426	 61.56	0	1529344..1529793	+	149	86357095	-	RHE_CH01457	-	DNA polymerase III subunit chi
1427	 61.92	0	1529839..1530765	-	308	86357096	gal	RHE_CH01458	-	D-galactose-1-dehydrogenase protein
1428	 63.53	0	1530863..1532905	-	680	86357097	-	RHE_CH01459	-	putative peptidase protein
1429	 64.44	0	1533010..1534314	-	434	86357098	-	RHE_CH01460	-	putative monooxygenase protein
1430	 66.08	+1	1534329..1535687	-	452	86357099	-	RHE_CH01461	-	hypothetical protein
1431	 62.03	0	1535684..1536481	-	265	86357100	-	RHE_CH01462	-	amino acid ABC transporter ATP-binding protein
1432	 60.66	0	1536486..1537268	-	260	86357101	-	RHE_CH01463	-	amino acid ABC transporter permease
1433	 59.44	0	1537274..1538020	-	248	86357102	-	RHE_CH01464	-	amino acid ABC transporter permease
1434	 60.25	0	1538045..1538839	-	264	86357103	-	RHE_CH01465	-	amino acid ABC transporter substrate-binding protein
1435	 61.71	0	1538983..1539567	-	194	86357104	-	RHE_CH01466	-	TetR family transcriptional regulator
1436	 62.35	0	1539717..1540388	-	223	86357105	-	RHE_CH01467	-	putative polysaccharide deacetylase protein
1437	 62.79	0	1540680..1542563	-	627	86357106	-	RHE_CH01468	-	putative ABC transporter, ATP-binding protein
1438	 63.97	0	1542684..1543646	-	320	86357107	-	RHE_CH01469	-	hypothetical protein
1439	 63.14	0	1543875..1544384	-	169	86357108	-	RHE_CH01470	-	hypothetical protein
1440	 62.86	0	1544614..1545138	+	174	86357109	ligE	RHE_CH01471	-	beta-aryl ether cleaving enzyme, lignin degradation protein
1441	 61.47	0	1545220..1545642	+	140	86357110	ndk	RHE_CH01472	-	nucleoside diphosphate kinase
1442	 60.71	0	1545726..1546229	-	167	86357111	-	RHE_CH01473	-	hypothetical protein
1443	 64.84	+1	1546226..1546771	-	181	86357112	-	RHE_CH01474	-	hypothetical protein
1444	 62.88	0	1546836..1547732	+	298	86357113	-	RHE_CH01475	-	branched chain amino acid ABC transporter permease
1445	 64.72	0	1547734..1548195	-	153	86357114	moaE	RHE_CH01476	-	molybdopterin converting factor subunit 2 protein
1446	 58.04	-1	1548454..1548708	-	84	86357115	moaD	RHE_CH01477	-	molybdopterin converting factor subunit 1 protein
1447	 60.74	0	1548705..1549295	-	196	86357116	pgsAch	RHE_CH01478	-	CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase protein
1448	 63.04	0	1549459..1551498	-	679	86357117	uvrC	RHE_CH01479	-	excinuclease ABC subunit C
1449	 62.24	0	1551495..1552262	-	255	86357118	-	RHE_CH01480	-	short chain dehydrogenase
1450	 60.69	0	1552627..1553262	+	211	86357119	ropB1	RHE_CH01481	-	outer membrane protein
1451	 58.79	0	1553346..1553942	-	198	86357120	gstch7	RHE_CH01482	-	glutathione S-transferase protein
1452	 62.30	0	1553999..1554868	-	289	86357121	-	RHE_CH01483	-	putative DNA methylase protein
1453	 64.05	0	1554951..1557089	+	712	86357122	-	RHE_CH01484	-	anaerobic dehydrogenase protein
61.61	MEAN

3.19	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.