IslandPathversion 1.0

IslandPath Analysis: Rhizobium etli CFN 42



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 61.61 STD DEV: 3.19
Rhizobium etli CFN 42, complete genome - 1..4381608
4035 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
87	 62.68	0	105297..105923	+	208	86355756	rnd1	RHE_CH00095	-	RNAse D protein
88	 64.49	0	106148..107665	+	505	86355757	-	RHE_CH00096	-	hypothetical protein
89	 60.45	0	107742..109445	-	567	86355758	rpsA	RHE_CH00097	-	30S ribosomal protein S1
90	 61.65	0	109619..110395	-	258	86355759	cmk	RHE_CH00098	-	cytidylate kinase
91	 57.03	-1	110650..111033	+	127	86355760	-	RHE_CH00099	-	hypothetical protein
92	 61.18	0	111780..112016	-	78	86355761	-	RHE_CH00101	-	hypothetical protein
93	 64.59	0	112252..112974	+	240	86355762	-	RHE_CH00102	-	hypothetical protein
94	 61.22	0	113042..113830	+	262	86355763	-	RHE_CH00103	-	hypothetical protein
95	 57.17	-1	113833..114306	-	157	86355764	-	RHE_CH00104	-	hypothetical protein
96	 63.68	0	114422..115057	+	211	86355765	-	RHE_CH00105	-	hypothetical protein
97	 63.10	0	115178..115597	-	139	86355766	irr	RHE_CH00106	-	iron transcriptional regulator protein
98	 61.82	0	115899..116414	+	171	86355767	fabA	RHE_CH00107	-	3-hydroxydecanoyl-(acyl carrier protein) dehydratase
99	 61.39	0	116460..117692	+	410	86355768	fabB	RHE_CH00108	-	3-oxoacyl-(acyl carrier protein) synthase I
100	 63.07	0	117697..118503	+	268	86355769	fabI1	RHE_CH00109	-	enoyl-(acyl carrier protein) reductase
101	 66.18	+1	118600..119616	-	338	86355770	-	RHE_CH00110	-	rRNA (guanine-N2-)-methyltransferase, small subunit protein
102	 61.80	0	119692..121830	-	712	86355771	pnp	RHE_CH00111	-	polynucleotide phosphorylase/polyadenylase
103	 55.56	-1	122180..122449	-	89	86355772	rpsO	RHE_CH00112	-	30S ribosomal protein S15
104	 59.27	0	122600..123451	-	283	86355773	-	RHE_CH00113	-	putative hydrolase protein
105	 63.24	0	123530..124462	-	310	86355774	truB	RHE_CH00114	-	tRNA pseudouridine synthase B
106	 59.85	0	124475..124885	-	136	86355775	rbfA	RHE_CH00115	-	ribosome-binding factor A
107	 65.03	+1	125036..127786	-	916	86355776	infB	RHE_CH00116	-	translation initiation factor IF-2
108	 62.75	0	127889..128578	-	229	86355777	-	RHE_CH00117	-	hypothetical protein
109	 61.30	0	128578..130179	-	533	86355778	nusA	RHE_CH00118	-	transcription elongation factor NusA
110	 57.79	-1	130240..130836	-	198	86355779	-	RHE_CH00119	-	hypothetical protein
111	 64.55	0	131018..132721	+	567	86355780	-	RHE_CH00120	-	putative ABC transporter, permease protein
112	 62.28	0	132730..133185	+	151	86355781	-	RHE_CH00121	-	acetyltransferase protein
113	 61.99	0	133192..134430	-	412	86355782	-	RHE_CH00122	-	transglycosylase protein
114	 64.36	0	134442..135047	-	201	86355783	recR	RHE_CH00123	-	recombination protein RecR
115	 59.67	0	135066..135722	+	218	86355784	-	RHE_CH00124	-	hypothetical protein
116	 62.96	0	135993..136316	-	107	86355785	-	RHE_CH00125	-	hypothetical protein
117	 65.28	+1	136339..138213	-	624	86355786	dnaX	RHE_CH00126	-	DNA polymerase III subunits gamma and tau
118	 59.85	0	138445..138855	+	136	86355787	-	RHE_CH00127	-	hypothetical protein
119	 62.08	0	138852..139811	+	319	86355788	-	RHE_CH00128	-	MutT/NUDIX family NTP pyrophosphohydrolase
120	 64.80	0	139816..140511	+	231	86355789	-	RHE_CH00129	-	transcriptional regulator protein
121	 62.06	0	141037..141405	+	122	86355790	-	RHE_CH00130	-	putative glyoxalase protein
122	 58.95	0	141425..142279	-	284	86355791	pheA	RHE_CH00131	-	prephenate dehydratase
123	 62.30	0	142290..143045	-	251	86355792	kdsB1	RHE_CH00132	-	3-deoxy-manno-octulosonate cytidylyltransferase
124	 61.17	0	143199..143762	+	187	86355793	cycM	RHE_CH00133	-	cytochrome-c protein
125	 62.55	0	143699..145084	-	461	86355794	-	RHE_CH00134	-	sugar ABC transporter, permease protein
126	 60.22	0	145313..146305	+	330	86355795	-	RHE_CH00135	-	sugar kinase protein
127	 63.89	0	146298..146837	-	179	86355796	-	RHE_CH00136	-	hypothetical protein
128	 63.64	0	146819..146917	-	32	86355797	-	RHE_CH00137	-	hypothetical protein
129	 63.67	0	147023..148024	+	333	86355798	-	RHE_CH00138	-	D-2-hydroxyacid dehydrogenase protein
130	 62.87	0	148056..148529	-	157	86355799	-	RHE_CH00139	-	acetyltransferase protein
131	 64.19	0	148526..149293	-	255	86355800	moeB	RHE_CH00140	-	molybdopterin biosynthesis protein MoeB
132	 65.07	+1	149341..150465	-	374	86355801	recF	RHE_CH00141	-	recombination protein F
133	 56.56	-1	150848..151213	+	121	86355802	-	RHE_CH00142	-	Cro/CI family transcriptional regulator
134	 58.67	0	151335..151709	-	124	86355803	-	RHE_CH00143	-	hypothetical protein
135	 61.44	0	151875..153002	-	375	86355804	dnaJ1	RHE_CH00144	-	DnaJ family molecular chaperone
136	 61.29	0	153088..155004	-	638	86355805	dnaK	RHE_CH00145	-	molecular chaperone DnaK
137	 64.01	0	155282..157612	-	776	86355806	-	RHE_CH00146	-	penicillin binding protein
138	 60.96	0	158145..159038	-	297	86355807	-	RHE_CH00147	-	hypothetical protein
139	 62.78	0	159233..160621	-	462	86355808	dapE1	RHE_CH00148	-	hypothetical protein
140	 62.31	0	160833..163220	+	795	86355809	-	RHE_CH00149	-	putative sensory box/GGDEF family protein
141	 64.03	0	163227..163643	-	138	86355810	-	RHE_CH00150	-	MarR family transcriptional regulator
142	 62.40	0	164051..167050	+	999	86355811	polA	RHE_CH00151	-	DNA polymerase I
143	 63.45	0	167219..169546	+	775	86355812	ftsK1	RHE_CH00152	-	cell division protein
144	 56.41	-1	169580..170086	-	168	86355813	-	RHE_CH00153	-	hypothetical protein
145	 66.13	+1	170096..170653	-	185	86355814	gmk1	RHE_CH00154	-	guanylate kinase (GMP kinase) protein
146	 63.42	0	170698..171837	-	379	86355815	phnM1	RHE_CH00155	-	phosphonate metabolism protein
147	 61.02	0	171850..172611	-	253	86355816	-	RHE_CH00156	-	hypothetical protein
148	 61.76	0	172686..174029	-	447	86355817	-	RHE_CH00157	-	phosphonate ABC transporter permease
149	 60.42	0	174037..174996	-	319	86355818	-	RHE_CH00158	-	phosphonate ABC transporter permease
150	 61.15	0	175169..176074	-	301	86355819	-	RHE_CH00159	-	phosphonate ABC transporter substrate-binding protein
151	 64.42	0	176162..177007	-	281	86355820	-	RHE_CH00160	-	phosphonate ABC transporter ATP-binding
152	 62.94	0	177125..177742	-	205	86355821	-	RHE_CH00161	-	acetyltransferase protein
153	 64.55	0	177739..178446	-	235	86355822	-	RHE_CH00162	-	phosphonate ABC transporter ATP-binding
154	 64.09	0	178474..179250	-	258	86355823	phnK	RHE_CH00163	-	phosphonates transport ATP-binding protein
155	 62.33	0	179247..180122	-	291	86355824	phnJ	RHE_CH00164	-	C-P (carbon-phosphorus) lyase component protein
156	 65.49	+1	180119..181225	-	368	86355825	phnI	RHE_CH00165	-	C-P (carbon-phosphorus) lyase component protein
157	 64.20	0	181230..181838	-	202	86355826	phnH	RHE_CH00166	-	carbon-phosphorus lyase complex subunit
158	 67.30	+1	181838..182314	-	158	86355827	phnG	RHE_CH00167	-	C-P (carbon-phosphorus) lyase component protein
159	 66.26	+1	182424..183161	+	245	86355828	-	RHE_CH00168	-	GntR family transcriptional regulator
160	 62.89	0	183206..183841	-	211	86355829	gpmA	RHE_CH00169	-	phosphoglyceromutase
161	 65.58	+1	183862..184686	-	274	86355830	dapB1	RHE_CH00170	-	dihydrodipicolinate reductase
162	 62.81	0	184702..186489	-	595	86355831	-	RHE_CH00171	-	multidrug ABC transporter ATP-binding protein
163	 64.04	0	186614..187639	-	341	86355832	glk	RHE_CH00172	-	glucokinase
164	 63.52	0	187657..188037	-	126	86355833	mgsA	RHE_CH00173	-	methylglyoxal synthase
165	 66.57	+1	188124..189197	-	357	86355834	mepA	RHE_CH00174	-	penicillin-insensitive murein endopeptidase
166	 57.12	-1	189438..191270	+	610	86355835	-	RHE_CH00175	-	peptide ABC transporter, substrate-binding protein
167	 57.67	-1	191421..192509	+	362	86355836	-	RHE_CH00176	-	peptide ABC transporter, permease protein
168	 60.92	0	192509..193657	+	382	86355837	-	RHE_CH00177	-	peptide ABC transporter, permease protein
169	 62.86	0	193663..195291	+	542	86355838	-	RHE_CH00178	-	peptide ABC transporter, ATP binding protein
170	 60.73	0	195300..196259	+	319	86355839	-	RHE_CH00179	-	hydroxyacid dehydrogenase protein
171	 64.46	0	196401..196763	+	120	86355840	-	RHE_CH00180	-	hypothetical protein
172	 61.00	0	196933..198237	+	434	86355841	pncB	RHE_CH00181	-	nicotinate phosphoribosyltransferase
173	 58.70	0	198261..198737	+	158	86355842	-	RHE_CH00182	-	hypothetical protein
174	 58.60	0	199152..199436	+	94	86355843	-	RHE_CH00183	-	hypothetical protein
175	 61.49	0	199409..199756	-	115	86355844	-	RHE_CH00184	-	hypothetical protein
176	 58.81	0	200451..200768	+	105	86355845	-	RHE_CH00186	-	hypothetical protein
177	 60.73	0	201095..202087	+	330	86355846	-	RHE_CH00187	-	outer membrane lipoprotein
178	 61.57	0	202176..203687	+	503	86355847	-	RHE_CH00188	-	sugar ABC transporter, ATP-binding protein
179	 60.78	0	203695..204798	+	367	86355848	-	RHE_CH00189	-	sugar ABC transporter, permease protein
180	 63.68	0	204809..205780	+	323	86355849	-	RHE_CH00190	-	sugar ABC transporter, permease protein
181	 62.31	0	205783..206172	+	129	86355850	cdd	RHE_CH00191	-	cytidine deaminase
182	 62.58	0	206169..206975	+	268	86355851	deoD	RHE_CH00192	-	purine nucleoside phosphorylase
183	 63.32	0	206972..207748	+	258	86355852	deoC	RHE_CH00193	-	2-deoxyribose-5-phosphate aldolase protein
184	 65.14	+1	207750..209057	+	435	86355853	deoA	RHE_CH00194	-	thymidine phosphorylase
185	 61.58	0	209064..209633	-	189	86355854	-	RHE_CH00195	-	hypothetical protein
186	 61.09	0	209761..210405	-	214	86355855	upp	RHE_CH00196	-	uracil phosphoribosyltransferase
61.61	MEAN

3.19	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.