IslandPathversion 1.0

IslandPath Analysis: Rhizobium etli CFN 42



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 61.61 STD DEV: 3.19
Rhizobium etli CFN 42, complete genome - 1..4381608
4035 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1290	 61.36	0	1378174..1379190	-	338	86356959	-	RHE_CH01319	-	glycosyltransferase
1291	 59.37	0	1379328..1380821	-	497	86356960	-	RHE_CH01320	-	hypothetical protein
1292	 65.48	+1	1381042..1381965	+	307	86356961	-	RHE_CH01321	-	hypothetical protein
1293	 65.06	+1	1381933..1383174	-	413	86356962	-	RHE_CH01322	-	putative RNA polymerase sigma factor protein (sigma-70)
1294	 60.56	0	1383183..1383542	-	119	86356963	-	RHE_CH01323	-	hypothetical protein
1295	 59.17	0	1383545..1383904	-	119	86356964	-	RHE_CH01324	-	hypothetical protein
1296	 59.94	0	1383920..1384276	-	118	86356965	-	RHE_CH01325	-	hypothetical protein
1297	 59.72	0	1384428..1384643	+	71	86356966	-	RHE_CH01326	-	hypothetical protein
1298	 62.74	0	1384653..1386155	-	500	86356967	amn	RHE_CH01327	-	AMP nucleosidase
1299	 55.93	-1	1386634..1387173	-	179	86356968	-	RHE_CH01328	-	hypothetical protein
1300	 61.85	0	1387415..1387684	+	89	86356969	-	RHE_CH01329	-	hypothetical protein
1301	 61.42	0	1387898..1388335	+	145	86356970	-	RHE_CH01330	-	glyoxalase protein
1302	 63.88	0	1388399..1389511	-	370	86356971	hisCch1	RHE_CH01331	-	histidinol-phosphate aminotransferase
1303	 45.00	-2	1389655..1390863	-	402	86356972	-	RHE_CH01332	-	insertion sequence transposase protein, IS10
1304	 60.68	0	1390967..1391350	-	127	86356973	-	RHE_CH01333	-	hypothetical protein
1305	 59.71	0	1391525..1391797	-	90	86356974	-	RHE_CH01334	-	hypothetical protein
1306	 61.97	0	1391832..1392278	+	148	86356975	-	RHE_CH01335	-	hypothetical protein
1307	 64.82	+1	1392332..1393198	-	288	86356976	-	RHE_CH01336	-	LysR family transcriptional regulator
1308	 57.06	-1	1393487..1393819	-	110	86356977	-	RHE_CH01337	-	hypothetical protein
1309	 62.35	0	1394120..1394605	+	161	86356978	-	RHE_CH01338	-	hypothetical protein
1310	 62.45	0	1396358..1397329	-	323	86356979	-	RHE_CH01340	-	transcriptional regulator protein
1311	 61.40	0	1397590..1398387	-	265	86356980	iolB	RHE_CH01341	-	myo-inositol catabolism protein
1312	 63.29	0	1398576..1399493	-	305	86356981	iolE	RHE_CH01342	-	myo-inositol catabolism protein
1313	 63.32	0	1399561..1401411	-	616	86356982	iolD	RHE_CH01343	-	myo-inositol catabolism, acetolactate synthase protein
1314	 63.98	0	1401602..1403536	-	644	86356983	iolC	RHE_CH01344	-	myo-inositol catabolism, sugar kinase protein
1315	 62.12	0	1403628..1404419	-	263	86356984	-	RHE_CH01345	-	putative transcriptional regulator protein
1316	 60.48	0	1404711..1405826	+	371	86356985	-	RHE_CH01346	-	oxidoreductase protein
1317	 62.56	0	1405914..1407131	+	405	86356986	-	RHE_CH01347	-	ferredoxin reductase protein
1318	 58.85	0	1408070..1409092	+	340	86356987	ropAch1	RHE_CH01349	-	porin outer membrane protein
1319	 55.04	-2	1409289..1410380	-	363	86356988	noeL2	RHE_CH01350	-	GDP-mannose 4,6-dehydratase protein
1320	 57.93	-1	1410433..1412640	-	735	86356989	-	RHE_CH01351	-	exopolysaccharide biosynthesis protein
1321	 62.02	0	1412637..1413776	-	379	86356990	-	RHE_CH01352	-	glycosyltransferase
1322	 59.87	0	1413773..1414876	-	367	86356991	-	RHE_CH01353	-	putative glycosyltransferase protein
1323	 57.94	-1	1414873..1415823	-	316	86356992	-	RHE_CH01354	-	glycosyltransferase
1324	 54.62	-2	1416442..1417761	+	439	86356993	exoQ	RHE_CH01355	-	exopolysaccharide production protein
1325	 58.72	0	1417944..1419893	+	649	86356994	-	RHE_CH01356	-	hypothetical protein
1326	 57.00	-1	1420116..1420322	+	68	86356995	-	RHE_CH01357	-	hypothetical protein
1327	 55.02	-2	1420615..1421481	+	288	86356996	-	RHE_CH01358	-	putative teichoic acid biosynthesis, UDP-N-acetyl-D-mannosaminuronic acid transferase protein
1328	 58.97	0	1421489..1422943	+	484	86356997	-	RHE_CH01359	-	putative sugar transferase involved in lipopolysaccharide synthesis, UDP-galactose-lipid carriertransferase protein
1329	 57.39	-1	1422945..1424033	+	362	86356998	-	RHE_CH01360	-	dTDP-glucose 4,6-dehydratase protein
1330	 56.44	-1	1424038..1425876	+	612	86356999	-	RHE_CH01361	-	hypothetical protein
1331	 55.13	-2	1426050..1426829	-	259	86357000	-	RHE_CH01362	-	two-component response regulator protein
1332	 57.99	-1	1427385..1427891	+	168	86357001	-	RHE_CH01363	-	acetyltransferase protein
1333	 58.48	0	1427888..1428925	+	345	86357002	-	RHE_CH01364	-	oxidoreductase protein
1334	 61.32	0	1428922..1430025	+	367	86357003	-	RHE_CH01365	-	putative aminotransferase protein
1335	 61.86	0	1430045..1430731	+	228	86357004	-	RHE_CH01366	-	hypothetical protein
1336	 59.26	0	1430728..1431699	+	323	86357005	-	RHE_CH01367	-	UDP-glucose 4-epimerase protein
1337	 60.67	0	1431696..1432913	+	405	86357006	-	RHE_CH01368	-	aminotransferase protein (involved in cell wall biogenesis)
1338	 60.92	0	1432993..1434420	-	475	86357007	-	RHE_CH01369	-	hypothetical protein
1339	 58.01	-1	1434707..1436023	-	438	86357008	exoF1	RHE_CH01370	-	exopolysaccharide biosynthesis protein
1340	 56.54	-1	1436202..1436438	-	78	86357009	-	RHE_CH01371	-	hypothetical protein
1341	 62.50	0	1436648..1441777	+	1709	86357010	-	RHE_CH01372	-	hypothetical protein
1342	 61.67	0	1441903..1443063	+	386	86357011	-	RHE_CH01373	-	P47K family cobalamin synthesis protein
1343	 62.04	0	1443313..1447788	+	1491	86357012	-	RHE_CH01374	-	hypothetical protein
1344	 64.40	0	1447807..1449039	+	410	86357013	-	RHE_CH01375	-	P47K family cobalamin synthesis protein
1345	 61.81	0	1449113..1449421	+	102	86357014	-	RHE_CH01376	-	hypothetical protein
1346	 62.70	0	1449463..1451607	+	714	86357015	-	RHE_CH01377	-	toxin secretion ABC transporter, ATP-binding protein
1347	 64.78	0	1451688..1453067	+	459	86357016	-	RHE_CH01378	-	HlyD family protein secretion protein
1348	 60.98	0	1453141..1454037	-	298	86357017	-	RHE_CH01379	-	putative hydrolase protein
1349	 64.26	0	1454103..1456178	-	691	86357018	-	RHE_CH01380	-	murein transglycosylase protein
1350	 63.28	0	1456393..1457277	+	294	86357019	dapAch2	RHE_CH01381	-	dihydrodipicolinate synthase
1351	 58.75	0	1457371..1457850	+	159	86357020	smpB	RHE_CH01382	-	SsrA-binding protein
1352	 58.25	-1	1457890..1458471	-	193	86357021	-	RHE_CH01383	-	hypothetical protein
1353	 60.74	0	1458770..1459174	+	134	86357022	rpoZ	RHE_CH01384	-	DNA-directed RNA polymerase subunit omega
1354	 61.61	0	1459317..1461551	+	744	86357023	relA	RHE_CH01385	-	guanosine-3`,5`-bis(diphosphate) 3`-pyrophosphohydrolase protein
1355	 53.33	-2	1461749..1461898	+	49	86357024	-	RHE_CH01386	-	hypothetical protein
1356	 62.61	0	1462054..1462644	+	196	86357025	-	RHE_CH01387	-	hypothetical protein
1357	 62.47	0	1462682..1463086	+	134	86357026	acpS	RHE_CH01388	-	4'-phosphopantetheinyl transferase
1358	 56.59	-1	1463267..1464010	+	247	86357027	lepB	RHE_CH01389	-	signal peptidase I protein
1359	 62.08	0	1464007..1464726	+	239	86357028	rnc	RHE_CH01390	-	ribonuclease III
1360	 60.19	0	1464734..1465675	+	313	86357029	era	RHE_CH01391	-	GTP-binding protein Era
1361	 58.83	0	1465826..1466578	+	250	86357030	-	RHE_CH01392	-	CRP family transcriptional regulator
1362	 56.21	-1	1466603..1467166	+	187	86357031	-	RHE_CH01393	-	putative two-component response regulator protein
1363	 66.54	+1	1467316..1468086	+	256	86357032	recO	RHE_CH01394	-	DNA repair protein RecO
1364	 64.36	0	1468188..1469183	+	331	86357033	-	RHE_CH01395	-	putative oxidoreductase protein
1365	 65.50	+1	1469358..1470215	-	285	86357034	-	RHE_CH01396	-	hypothetical protein
1366	 62.79	0	1470226..1470870	-	214	86357035	-	RHE_CH01397	-	putative metal-dependent phosphohydrolase protein
1367	 60.52	0	1471017..1472921	-	634	86357036	-	RHE_CH01398	-	putative signal-transducer protein
1368	 58.77	0	1473343..1473684	+	113	86357037	-	RHE_CH01399	-	hypothetical protein
1369	 60.47	0	1473808..1474323	+	171	86357038	sodC	RHE_CH01400	-	superoxide dismutase protein
1370	 60.20	0	1474351..1475232	-	293	86357039	-	RHE_CH01401	-	putative mechanosensitive ion channel protein
1371	 66.48	+1	1475292..1475822	-	176	86357040	-	RHE_CH01402	-	putative tyrosine phosphatase protein
1372	 62.65	0	1475819..1476391	-	190	86357041	-	RHE_CH01403	-	putative hydrolase protein
1373	 66.78	+1	1476421..1477266	-	281	86357042	-	RHE_CH01404	-	putative aminomethyltransferase protein (glycine cleavage)
1374	 62.02	0	1477357..1478259	-	300	86357043	-	RHE_CH01405	-	hypothetical protein
1375	 62.35	0	1478490..1478906	-	138	86357044	-	RHE_CH01406	-	hypothetical protein
1376	 63.28	0	1478965..1479525	-	186	86357045	-	RHE_CH01407	-	ADP-ribose phosphorylase
1377	 60.56	0	1479526..1479885	+	119	86357046	-	RHE_CH01408	-	hypothetical protein
1378	 62.53	0	1479894..1480715	+	273	86357047	-	RHE_CH01409	-	hypothetical protein
1379	 62.06	0	1481297..1482142	-	281	86357048	pssA1	RHE_CH01410	-	CDP-diacylglycerol-serine O-phosphatidyltransferase protein
1380	 63.81	0	1482198..1482896	-	232	86357049	psd	RHE_CH01411	-	phosphatidylserine decarboxylase
1381	 56.83	-1	1483268..1483582	+	104	86357050	-	RHE_CH01412	-	ArsR family transcriptional regulator
1382	 59.44	0	1483579..1483938	+	119	86357051	-	RHE_CH01413	-	hypothetical protein
1383	 57.96	-1	1483984..1484592	+	202	86357052	clpP	RHE_CH01414	-	ATP-dependent Clp protease proteolytic subunit
1384	 61.77	0	1484819..1486696	-	625	86357053	-	RHE_CH01415	-	putative ABC transporter, ATP-binding protein
1385	 66.47	+1	1486906..1488957	-	683	86357054	-	RHE_CH01416	-	peptidoglycan binding protein
1386	 59.46	0	1489115..1489738	+	207	86357055	-	RHE_CH01417	-	hypothetical protein
1387	 62.40	0	1489754..1490668	-	304	86357056	-	RHE_CH01418	-	hypothetical protein
1388	 62.21	0	1490876..1492489	-	537	86357057	leuA1	RHE_CH01419	-	alpha-isopropylmalate/homocitrate synthase family transferase
1389	 62.62	0	1492666..1493628	-	320	86357058	pipch1	RHE_CH01420	-	proline iminopeptidase protein
61.61	MEAN

3.19	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.