IslandPathversion 1.0

IslandPath Analysis: Rhizobium etli CFN 42



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 61.61 STD DEV: 3.19
Rhizobium etli CFN 42, complete genome - 1..4381608
4035 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1195	 63.92	0	1278852..1280237	+	461	86356864	-	RHE_CH01224	-	efflux-type transporter, drug resistance translocase protein
1196	 60.50	0	1280319..1280837	-	172	86356865	-	RHE_CH01225	-	hypothetical protein
1197	 63.02	0	1280966..1283074	-	702	86356866	ptrB	RHE_CH01226	-	protease II protein
1198	 57.69	-1	1283319..1283708	+	129	86356867	-	RHE_CH01227	-	hypothetical protein
1199	 63.25	0	1283876..1284607	+	243	86356868	-	RHE_CH01228	-	putative polysaccharide deacetylase protein
1200	 67.25	+1	1284643..1285836	-	397	86356869	-	RHE_CH01229	-	putative oxidoreductase protein
1201	 60.48	0	1285953..1287002	-	349	86356870	-	RHE_CH01230	-	putative permease protein
1202	 61.46	0	1287335..1287718	+	127	86356871	-	RHE_CH01231	-	hypothetical protein
1203	 62.02	0	1287729..1288589	-	286	86356872	-	RHE_CH01232	-	putative ring-cleaving dioxygenase protein
1204	 63.81	0	1288871..1289290	+	139	86356873	-	RHE_CH01233	-	universal stress protein
1205	 62.03	0	1289451..1290119	+	222	86356874	-	RHE_CH01234	-	putative hemolysin III protein
1206	 63.18	0	1290232..1290747	+	171	86356875	-	RHE_CH01235	-	phosphinothricin acetyltransferase (antibiotic resistance) protein
1207	 62.68	0	1290938..1291639	+	233	86356876	-	RHE_CH01236	-	hypothetical protein
1208	 55.31	-1	1291697..1291969	-	90	86356877	usg	RHE_CH01237	-	phosphoribosylanthranilate isomerase subunit
1209	 60.63	0	1292250..1292564	+	104	86356878	groESch2	RHE_CH01238	-	10 kDa chaperonin, heat shock protein
1210	 61.02	0	1292616..1294244	+	542	86356879	groEL	RHE_CH01239	-	chaperonin GroEL
1211	 58.87	0	1294338..1294760	+	140	86356880	-	RHE_CH01240	-	hypothetical protein
1212	 59.73	0	1294846..1295940	+	364	86356881	-	RHE_CH01241	-	putative glycosyltransferase protein
1213	 60.20	0	1295956..1298166	+	736	86356882	-	RHE_CH01242	-	hypothetical protein
1214	 60.81	0	1298205..1298426	-	73	86356883	-	RHE_CH01243	-	hypothetical protein
1215	 58.33	-1	1298641..1299120	+	159	86356884	-	RHE_CH01244	-	HSP20 family molecular chaperone
1216	 58.63	0	1299200..1299709	+	169	86356885	-	RHE_CH01245	-	HSP20 family molecular chaperone
1217	 58.20	-1	1300041..1300406	+	121	86356886	-	RHE_CH01246	-	hypothetical protein
1218	 63.77	0	1300580..1300993	-	137	86356887	msrB	RHE_CH01247	-	methionine sulfoxide reductase B
1219	 65.74	+1	1301181..1301396	+	71	86356888	-	RHE_CH01248	-	hypothetical protein
1220	 61.81	0	1301853..1302284	+	143	86356889	rosR	RHE_CH01249	-	transcriptional regulator protein - nodulation competitiveness determinant
1221	 59.40	0	1302661..1303128	-	155	86356890	-	RHE_CH01250	-	hypothetical protein
1222	 63.80	0	1303478..1303966	-	162	86356891	-	RHE_CH01251	-	hypothetical protein
1223	 64.72	0	1304421..1305962	+	513	86356892	-	RHE_CH01252	-	two-component sensor histidine kinase protein
1224	 65.99	+1	1305997..1306887	+	296	86356893	-	RHE_CH01253	-	putative peptidoglycan-binding protein (cell wall degradation activity)
1225	 64.60	0	1306996..1308444	+	482	86356894	-	RHE_CH01254	-	putative methyl-accepting chemotaxis protein
1226	 64.93	+1	1308506..1308850	+	114	86356895	-	RHE_CH01255	-	hypothetical protein
1227	 65.09	+1	1308870..1309946	-	358	86356896	-	RHE_CH01256	-	hypothetical protein
1228	 58.08	-1	1310064..1310459	-	131	86356897	-	RHE_CH01257	-	hypothetical protein
1229	 64.54	0	1310609..1310890	-	93	86356898	-	RHE_CH01258	-	hypothetical protein
1230	 62.68	0	1310979..1311530	-	183	86356899	-	RHE_CH01259	-	hypothetical protein
1231	 66.67	+1	1311523..1312050	-	175	86356900	-	RHE_CH01260	-	hypothetical protein
1232	 64.24	0	1312263..1314446	-	727	86356901	pbp	RHE_CH01261	-	cell wall biosynthesis penicillin-binding protein
1233	 60.80	0	1314638..1315114	+	158	86356902	-	RHE_CH01262	-	hypothetical protein
1234	 66.31	+1	1315120..1315680	-	186	86356903	-	RHE_CH01263	-	TetR family transcriptional regulator
1235	 66.33	+1	1315799..1316701	+	300	86356904	-	RHE_CH01264	-	short chain dehydrogenase
1236	 61.32	0	1316895..1317212	-	105	86356905	-	RHE_CH01265	-	hypothetical protein
1237	 60.89	0	1317416..1317796	-	126	86356906	-	RHE_CH01266	-	lactoylglutathione lyase protein
1238	 61.81	0	1318031..1318339	-	102	86356907	-	RHE_CH01267	-	hypothetical protein
1239	 61.01	0	1318344..1318661	-	105	86356908	-	RHE_CH01268	-	hypothetical protein
1240	 57.20	-1	1318658..1318921	-	87	86356909	-	RHE_CH01269	-	hypothetical protein
1241	 59.12	0	1319420..1319737	+	105	86356910	groESch3	RHE_CH01270	-	10 kDa chaperonin, heat shock protein
1242	 62.69	0	1319785..1321419	+	544	86356911	groEL	RHE_CH01271	-	chaperonin GroEL
1243	 60.15	0	1321483..1321881	+	132	86356912	-	RHE_CH01272	-	hypothetical protein
1244	 63.58	0	1322081..1322986	-	301	86356913	-	RHE_CH01273	-	serine protease protein
1245	 60.67	0	1323138..1323404	-	88	86356914	-	RHE_CH01274	-	hypothetical protein
1246	 66.45	+1	1323495..1324850	+	451	86356915	-	RHE_CH01275	-	GntR family transcriptional regulator
1247	 62.60	0	1325047..1325415	+	122	86356916	-	RHE_CH01276	-	hypothetical protein
1248	 65.66	+1	1325425..1326318	-	297	86356917	gstR	RHE_CH01277	-	LysR family transcriptional regulator
1249	 63.24	0	1326451..1327062	+	203	86356918	gstA	RHE_CH01278	-	glutathione S-transferase protein
1250	 63.34	0	1327121..1328053	+	310	86356919	-	RHE_CH01279	-	putative pyridoxine 5`-phosphate oxidase protein
1251	 60.17	0	1328131..1328592	+	153	86356920	-	RHE_CH01280	-	hypothetical protein
1252	 63.64	0	1328613..1329173	+	186	86356921	-	RHE_CH01281	-	TetR family transcriptional regulator
1253	 65.95	+1	1329592..1330146	+	184	86356922	-	RHE_CH01282	-	hypothetical protein
1254	 60.46	0	1330204..1330509	+	101	86356923	-	RHE_CH01283	-	hypothetical protein
1255	 66.03	+1	1330707..1331969	-	420	86356924	-	RHE_CH01284	-	putative transporter, permease protein
1256	 65.06	+1	1332391..1332639	+	82	86356925	-	RHE_CH01285	-	hypothetical protein
1257	 61.46	0	1332690..1333361	+	223	86356926	feuP	RHE_CH01286	-	two-component response regulator protein
1258	 64.32	0	1333351..1334754	+	467	86356927	feuQ	RHE_CH01287	-	two-component sensor histidine kinase protein
1259	 65.73	+1	1334873..1335298	+	141	86356928	lppA	RHE_CH01288	-	outer membrane lipoprotein-related protein
1260	 65.43	+1	1335397..1336527	+	376	86356929	cycH	RHE_CH01289	-	cytochrome-c-type biogenesis protein
1261	 63.03	0	1336524..1336991	+	155	86356930	cycJ	RHE_CH01290	-	cytochrome c-type biogenesis protein CcmE
1262	 66.47	+1	1336988..1338982	+	664	86356931	cycK	RHE_CH01291	-	cytochrome-c-type synthesis protein
1263	 63.60	0	1338979..1339434	+	151	86356932	cycL	RHE_CH01292	-	cytochrome-c-type biogenesis protein
1264	 64.28	0	1339582..1341171	+	529	86356933	degPch2	RHE_CH01293	-	serine protease DO-like protein
1265	 62.17	0	1341237..1341992	+	251	86356934	ragA	RHE_CH01294	-	two-component response regulator protein
1266	 62.42	0	1341989..1343401	+	470	86356935	ragB	RHE_CH01295	-	two-component sensor histidine kinase protein
1267	 64.03	0	1343536..1346493	+	985	86356936	glnE	RHE_CH01296	-	glutamate-ammonia-ligase adenylyltransferase protein
1268	 63.67	0	1346845..1349148	-	767	86356937	-	RHE_CH01297	-	two-component sensor histidine kinase protein
1269	 62.14	0	1349339..1351987	-	882	86356938	pepN	RHE_CH01298	-	aminopeptidase N protein
1270	 62.19	0	1352358..1353296	+	312	86356939	-	RHE_CH01299	-	putative permease protein
1271	 60.66	0	1353365..1354396	+	343	86356940	-	RHE_CH01300	-	hypothetical protein
1272	 55.73	-1	1354654..1354845	-	63	86356941	-	RHE_CH01301	-	hypothetical protein
1273	 65.32	+1	1354978..1355871	-	297	86356942	-	RHE_CH01302	-	DNA polymerase bacteriophage-type (uracil-DNA glycosylase) protein
1274	 61.79	0	1355940..1357232	-	430	86356943	-	RHE_CH01303	-	HSP70 family molecular chaperone
1275	 62.92	0	1357438..1360563	-	1041	86356944	-	RHE_CH01304	-	AcrB/AcrD/AcrF family multidrug efflux protein
1276	 62.36	0	1360560..1361882	-	440	86356945	-	RHE_CH01305	-	HlyD family protein secretion protein
1277	 59.52	0	1362158..1363039	+	293	86356946	-	RHE_CH01306	-	putative aminoglycoside phosphotransferase protein (antibiotic resistance protein)
1278	 64.39	0	1363050..1363838	-	262	86356947	-	RHE_CH01307	-	3-oxoacyl-[acyl-carrier-protein] reductase protein
1279	 63.36	0	1364081..1365745	+	554	86356948	etf	RHE_CH01308	-	electrotransfer ubiquinone oxidoreductase protein
1280	 64.23	0	1365880..1366494	+	204	86356949	-	RHE_CH01309	-	hypothetical protein
1281	 65.23	+1	1366570..1367472	-	300	86356950	-	RHE_CH01310	-	putative permease protein
1282	 56.51	-1	1367571..1368092	+	173	86356951	-	RHE_CH01311	-	AsnC family transcriptional regulator
1283	 64.92	+1	1368258..1369631	-	457	86356952	mgtE	RHE_CH01312	-	magnesium (mg2+) transporter protein
1284	 64.46	0	1369891..1371114	-	407	86356953	-	RHE_CH01313	-	putative permease protein
1285	 61.80	0	1371411..1372355	+	314	86356954	-	RHE_CH01314	-	diacylglycerol kinase protein
1286	 65.09	+1	1372368..1373702	-	444	86356955	-	RHE_CH01315	-	glutamine synthetase protein
1287	 62.57	0	1373801..1375168	+	455	86356956	bioA	RHE_CH01316	-	putative aminotransferase
1288	 60.82	0	1375174..1376661	-	495	86356957	-	RHE_CH01317	-	hypothetical protein
1289	 64.07	0	1376663..1378162	-	499	86356958	-	RHE_CH01318	-	hypothetical protein
1290	 61.36	0	1378174..1379190	-	338	86356959	-	RHE_CH01319	-	glycosyltransferase
1291	 59.37	0	1379328..1380821	-	497	86356960	-	RHE_CH01320	-	hypothetical protein
1292	 65.48	+1	1381042..1381965	+	307	86356961	-	RHE_CH01321	-	hypothetical protein
1293	 65.06	+1	1381933..1383174	-	413	86356962	-	RHE_CH01322	-	putative RNA polymerase sigma factor protein (sigma-70)
1294	 60.56	0	1383183..1383542	-	119	86356963	-	RHE_CH01323	-	hypothetical protein
61.61	MEAN

3.19	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.