IslandPathversion 1.0

IslandPath Analysis: Ralstonia pickettii 12J



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 64.67 STD DEV: 3.41
Ralstonia pickettii 12J chromosome 2, complete sequence - 1..1302238
1153 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
940	 60.42	-1	1073787..1074122	+	111	187926898	-	Rpic_4732	-	flagellar hook-basal body complex subunit FliE
941	 65.67	0	1074186..1075286	+	366	187926899	-	Rpic_4733	-	glycosyl transferase family 2
942	 63.31	0	1075297..1076070	+	257	187926900	-	Rpic_4734	-	glucose-1-phosphate cytidylyltransferase
943	 66.76	0	1076070..1077161	+	363	187926901	-	Rpic_4735	-	CDP-glucose 4,6-dehydratase
944	 63.80	0	1077158..1077751	+	197	187926902	-	Rpic_4736	-	dTDP-4-dehydrorhamnose 3,5-epimerase
945	 63.37	0	1077748..1078899	+	383	187926903	-	Rpic_4737	-	Glutamine--scyllo-inositol transaminase
946	 65.48	0	1078884..1079726	+	280	187926904	-	Rpic_4738	-	Phytanoyl-CoA dioxygenase
947	 62.33	0	1079729..1080904	+	391	187926905	-	Rpic_4739	-	Methyltransferase type 12
948	 63.18	0	1080901..1081416	+	171	187926906	-	Rpic_4740	-	GCN5-related N-acetyltransferase
949	 62.32	0	1081413..1082126	+	237	187926907	-	Rpic_4741	-	WbqC-like family protein
950	 61.80	0	1082123..1083397	+	424	187926908	-	Rpic_4742	-	glycosyl transferase family 2
951	 59.63	-1	1083416..1083742	+	108	187926909	-	Rpic_4743	-	flagellar hook-basal body complex subunit FliE
952	 65.72	0	1083885..1084307	+	140	187926910	-	Rpic_4744	-	OsmC family protein
953	 66.22	0	1084373..1084816	+	147	187926911	-	Rpic_4745	-	transcriptional regulator, MarR family
954	 64.75	0	1084803..1085897	+	364	187926912	-	Rpic_4746	-	glycosyl transferase family 2
955	 66.39	0	1085908..1086264	-	118	187926913	-	Rpic_4747	-	putative flagellar protein FliT
956	 67.38	0	1086320..1086742	-	140	187926914	-	Rpic_4748	-	flagellar protein FliS
957	 63.68	0	1086793..1088835	-	680	187926915	-	Rpic_4749	-	flagellar hook-associated 2 domain protein
958	 60.10	-1	1089022..1089843	-	273	187926916	-	Rpic_4750	-	flagellin domain protein
959	 64.62	0	1090242..1090877	+	211	187926917	-	Rpic_4751	-	two component transcriptional regulator, LuxR family
960	 66.31	0	1090878..1092836	-	652	187926918	-	Rpic_4752	-	diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
961	 64.04	0	1093112..1093606	+	164	187926919	-	Rpic_4753	-	flagellar basal body-associated protein FliL
962	 61.51	0	1093608..1094615	+	335	187926920	-	Rpic_4754	-	flagellar motor switch protein FliM
963	 64.68	0	1094605..1095057	+	150	187926921	-	Rpic_4755	-	flagellar motor switch protein FliN
964	 69.53	+1	1095117..1095500	+	127	187926922	-	Rpic_4756	-	flagellar biosynthesis protein FliO
965	 63.33	0	1095497..1096246	+	249	187926923	-	Rpic_4757	-	flagellar biosynthetic protein FliP
966	 60.37	-1	1096256..1096525	+	89	187926924	-	Rpic_4758	-	flagellar biosynthetic protein FliQ
967	 65.53	0	1096559..1097347	+	262	187926925	-	Rpic_4759	-	flagellar biosynthetic protein FliR
968	 68.33	+1	1097864..1098466	+	200	187926926	-	Rpic_4760	-	hypothetical protein
969	 65.06	0	1098451..1099257	+	268	187926927	-	Rpic_4761	-	phospholipid/glycerol acyltransferase
970	 53.88	-2	1099232..1099489	+	85	187926928	-	Rpic_4762	-	putative acyl-carrier protein
971	 58.94	-1	1099535..1099780	+	81	187926929	-	Rpic_4763	-	phosphopantetheine-binding
972	 65.41	0	1099785..1100423	+	212	187926930	-	Rpic_4764	-	hypothetical protein
973	 66.91	0	1100420..1102093	+	557	187926931	-	Rpic_4765	-	AMP-dependent synthetase and ligase
974	 66.09	0	1102090..1103811	+	573	187926932	-	Rpic_4766	-	glycosyl transferase family 2
975	 67.29	0	1103804..1105402	+	532	187926933	-	Rpic_4767	-	Histidine ammonia-lyase
976	 63.68	0	1105389..1105823	+	144	187926934	-	Rpic_4768	-	thioesterase superfamily protein
977	 65.75	0	1105811..1106467	+	218	187926935	-	Rpic_4769	-	conserved hypothetical signal peptide protein
978	 67.46	0	1106464..1108872	+	802	187926936	-	Rpic_4770	-	putative lipoprotein transmembrane
979	 66.75	0	1108869..1110050	+	393	187926937	-	Rpic_4771	-	Beta-ketoacyl synthase
980	 64.35	0	1110053..1110526	+	157	187926938	-	Rpic_4772	-	Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ
981	 66.67	0	1110523..1111251	+	242	187926939	-	Rpic_4773	-	3-oxoacyl-(acyl-carrier-protein) reductase
982	 66.91	0	1111251..1112477	+	408	187926940	-	Rpic_4774	-	Beta-ketoacyl synthase
983	 67.67	0	1112477..1113775	+	432	187926941	-	Rpic_4775	-	Beta-ketoacyl synthase
984	 63.45	0	1113772..1114206	+	144	187926942	-	Rpic_4776	-	conserved hypothetical signal peptide protein
985	 58.39	-1	1114264..1114698	+	144	187926943	-	Rpic_4777	-	putative excinuclease, ATPase subunit
986	 61.04	-1	1114743..1115471	-	242	187926944	-	Rpic_4778	-	Methyltransferase type 11
987	 64.29	0	1115623..1116882	+	419	187926945	-	Rpic_4779	-	monooxygenase FAD-binding
988	 65.32	0	1116930..1117673	-	247	187926946	-	Rpic_4780	-	protein of unknown function DUF1275
989	 61.98	0	1117736..1118695	-	319	187926947	-	Rpic_4781	-	flagellar hook-associated protein 3
990	 62.85	0	1118763..1120700	-	645	187926948	-	Rpic_4782	-	flagellar hook-associated protein FlgK
991	 66.02	0	1120816..1121901	-	361	187926949	-	Rpic_4783	-	flagellar rod assembly protein/muramidase FlgJ
992	 64.61	0	1121918..1123036	-	372	187926950	-	Rpic_4784	-	flagellar P-ring protein
993	 67.34	0	1123047..1123790	-	247	187926951	-	Rpic_4785	-	flagellar L-ring protein
994	 63.60	0	1123824..1124606	-	260	187926952	-	Rpic_4786	-	flagellar basal-body rod protein FlgG
995	 63.28	0	1124643..1125380	-	245	187926953	-	Rpic_4787	-	flagellar basal-body rod protein FlgF
996	 63.44	0	1125410..1126618	-	402	187926954	-	Rpic_4788	-	flagellar basal body FlaE domain protein
997	 62.50	0	1126658..1127305	-	215	187926955	-	Rpic_4789	-	flagellar hook capping protein
998	 62.25	0	1127343..1127750	-	135	187926956	-	Rpic_4790	-	flagellar basal-body rod protein FlgC
999	 62.94	0	1127908..1128363	-	151	187926957	-	Rpic_4791	-	flagellar basal-body rod protein FlgB
1000	 68.84	+1	1128759..1129634	+	291	187926958	-	Rpic_4792	-	flagella basal body P-ring formation protein FlgA
1001	 69.16	+1	1129746..1130066	+	106	187926959	-	Rpic_4793	-	anti-sigma-28 factor, FlgM
1002	 67.32	0	1130188..1130649	+	153	187926960	-	Rpic_4794	-	FlgN family protein
1003	 63.96	0	1131133..1131798	+	221	187926961	-	Rpic_4795	-	two component transcriptional regulator, LuxR family
1004	 63.36	0	1131911..1132969	-	352	187926962	-	Rpic_4796	-	porin Gram-negative type
1005	 68.31	+1	1133230..1133958	-	242	187926963	-	Rpic_4797	-	transcriptional regulator, GntR family
1006	 61.17	-1	1134080..1134370	-	96	187926964	-	Rpic_4798	-	histone family protein nucleoid-structuring protein H-NS
1007	 66.63	0	1135305..1137959	+	884	187926965	-	Rpic_4799	-	diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
1008	 71.08	+1	1138005..1138208	-	67	187926966	-	Rpic_4800	-	putative osmotically inducible lipoprotein B2 transmembrane
1009	 61.63	0	1138686..1140272	-	528	187926967	-	Rpic_4801	-	isocitrate lyase and phosphorylmutase
1010	 70.69	+1	1140781..1141377	-	198	187926968	-	Rpic_4802	-	hypothetical protein
1011	 62.30	0	1141377..1141811	-	144	187926969	-	Rpic_4803	-	OsmC family protein
1012	 67.11	0	1141931..1144174	-	747	187926970	-	Rpic_4804	-	aldehyde oxidase and xanthine dehydrogenase molybdopterin binding
1013	 62.75	0	1144194..1144652	-	152	187926971	-	Rpic_4805	-	(2Fe-2S)-binding domain protein
1014	 64.39	0	1145298..1147010	+	570	187926972	-	Rpic_4806	-	2-isopropylmalate synthase
1015	 62.27	0	1147138..1147524	+	128	187926973	-	Rpic_4807	-	protein of unknown function DUF326
1016	 65.63	0	1147542..1148024	+	160	187926974	-	Rpic_4808	-	transcriptional regulator, MerR family
1017	 69.26	+1	1148076..1150427	-	783	187926975	-	Rpic_4809	-	heavy metal translocating P-type ATPase
1018	 70.13	+1	1150479..1151027	-	182	187926976	-	Rpic_4810	-	protein of unknown function DUF1234
1019	 64.36	0	1151217..1152515	+	432	187926977	-	Rpic_4811	-	citrate/H+ symporter, CitMHS family
1020	 67.77	0	1152520..1153875	+	451	187926978	-	Rpic_4812	-	protein of unknown function DUF1446
1021	 67.29	0	1153877..1154197	+	106	187926979	-	Rpic_4813	-	hypothetical protein
1022	 67.67	0	1154224..1155123	+	299	187926980	-	Rpic_4814	-	transcriptional regulator, LysR family
1023	 68.16	+1	1155214..1155681	+	155	187926981	-	Rpic_4815	-	UspA domain protein
1024	 65.09	0	1155797..1156240	+	147	187926982	-	Rpic_4816	-	protein of unknown function DUF1486
1025	 65.17	0	1156295..1157299	+	334	187926983	-	Rpic_4817	-	2-nitropropane dioxygenase NPD
1026	 64.44	0	1157304..1157843	-	179	187926984	-	Rpic_4818	-	transcriptional regulator, PadR-like family
1027	 61.70	0	1158267..1158689	-	140	187926985	-	Rpic_4819	-	conserved hypothetical secreted protein
1028	 65.24	0	1158888..1160150	-	420	187926986	-	Rpic_4820	-	beta-lactamase
1029	 70.04	+1	1160489..1161406	+	305	187926987	-	Rpic_4821	-	transcriptional regulator, LysR family
1030	 67.88	0	1161640..1162710	-	356	187926988	-	Rpic_4822	-	2-nitropropane dioxygenase NPD
1031	 68.05	0	1162860..1163438	+	192	187926989	-	Rpic_4823	-	protein of unknown function DUF1470
1032	 69.15	+1	1163547..1164311	+	254	187926990	-	Rpic_4824	-	short-chain dehydrogenase/reductase SDR
1033	 70.00	+1	1164536..1165795	-	419	187926991	-	Rpic_4825	-	major facilitator superfamily MFS_1
1034	 68.12	+1	1165885..1166847	+	320	187926992	-	Rpic_4826	-	transcriptional regulator, AraC family
1035	 63.36	0	1166941..1167606	+	221	187926993	-	Rpic_4827	-	Glutathione S-transferase domain
1036	 67.25	0	1167627..1168487	+	286	187926994	-	Rpic_4828	-	methyltransferase
1037	 61.56	0	1168501..1168833	-	110	187926995	-	Rpic_4829	-	hypothetical protein
1038	 67.18	0	1168989..1169378	-	129	187926996	-	Rpic_4830	-	putative transmembrane protein
1039	 62.30	0	1169468..1169833	-	121	187926997	-	Rpic_4831	-	response regulator receiver protein
64.67	MEAN

3.41	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.