IslandPathversion 1.0

IslandPath Analysis: Ralstonia pickettii 12J



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 64.67 STD DEV: 3.41
Ralstonia pickettii 12J chromosome 2, complete sequence - 1..1302238
1153 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
909	 66.06	0	1043789..1044442	+	217	187926867	-	Rpic_4700	-	transcriptional regulator, TetR family
910	 67.13	0	1046001..1046435	+	144	187926868	-	Rpic_4702	-	histidine triad (HIT) protein
911	 69.97	+1	1046609..1046971	-	120	187926869	-	Rpic_4703	-	hypothetical protein
912	 66.40	0	1047146..1048669	-	507	187926870	-	Rpic_4704	-	peptidase M20
913	 65.96	0	1048849..1050267	+	472	187926871	-	Rpic_4705	-	transcriptional regulator, GntR family with aminotransferase domain
914	 65.35	0	1050350..1050805	+	151	187926872	-	Rpic_4706	-	hypothetical protein
915	 67.56	0	1050910..1051689	-	259	187926873	-	Rpic_4707	-	Enoyl-CoA hydratase/isomerase
916	 68.05	0	1051686..1052120	-	144	187926874	-	Rpic_4708	-	transcriptional regulator, MarR family
917	 68.92	+1	1052117..1053004	-	295	187926875	-	Rpic_4709	-	alpha/beta hydrolase-like protein
918	 64.71	0	1053121..1053477	+	118	187926876	-	Rpic_4710	-	transcriptional regulator, ArsR family
919	 65.41	0	1053461..1054414	+	317	187926877	-	Rpic_4711	-	Activator of Hsp90 ATPase 1 family protein
920	 65.06	0	1054551..1055672	-	373	187926878	-	Rpic_4712	-	Beta-ketoacyl-acyl-carrier-protein synthase I
921	 64.59	0	1056033..1056707	+	224	187926879	-	Rpic_4713	-	Phosphoglycerate mutase
922	 63.66	0	1056771..1057535	+	254	187926880	-	Rpic_4714	-	short-chain dehydrogenase/reductase SDR
923	 65.14	0	1057608..1058525	+	305	187926881	-	Rpic_4715	-	beta-lactamase domain protein
924	 66.67	0	1058638..1058910	+	90	187926882	-	Rpic_4716	-	hypothetical protein
925	 63.34	0	1059131..1060363	-	410	187926883	-	Rpic_4717	-	major facilitator superfamily MFS_1
926	 65.30	0	1060800..1061018	+	72	187926884	-	Rpic_4718	-	hypothetical protein
927	 65.30	0	1061084..1062109	-	341	187926885	-	Rpic_4719	-	putative transmembrane protein
928	 65.17	0	1062106..1062771	-	221	187926886	-	Rpic_4720	-	protein of unknown function DUF1345
929	 62.09	0	1062849..1063154	-	101	187926887	-	Rpic_4721	-	hypothetical protein
930	 64.30	0	1063280..1063702	-	140	187926888	-	Rpic_4722	-	conserved hypothetical signal peptide protein
931	 68.45	+1	1064115..1064282	+	55	187926889	-	Rpic_4723	-	putative lipoprotein
932	 67.03	0	1064293..1064841	-	182	187926890	-	Rpic_4724	-	GCN5-related N-acetyltransferase
933	 66.46	0	1065014..1065991	+	325	187926891	-	Rpic_4725	-	Rhodanese domain protein
934	 69.90	+1	1066334..1067911	-	525	187926892	-	Rpic_4726	-	flagellar hook-length control protein
935	 62.80	0	1067947..1068411	-	154	187926893	-	Rpic_4727	-	flagellar export protein FliJ
936	 67.85	0	1068520..1069959	-	479	187926894	-	Rpic_4728	-	flagellar protein export ATPase FliI
937	 69.38	+1	1069949..1070686	-	245	187926895	-	Rpic_4729	-	flagellar assembly protein FliH
938	 63.65	0	1070719..1071711	-	330	187926896	-	Rpic_4730	-	flagellar motor switch protein FliG
939	 67.05	0	1071708..1073543	-	611	187926897	-	Rpic_4731	-	flagellar M-ring protein FliF
940	 60.42	-1	1073787..1074122	+	111	187926898	-	Rpic_4732	-	flagellar hook-basal body complex subunit FliE
941	 65.67	0	1074186..1075286	+	366	187926899	-	Rpic_4733	-	glycosyl transferase family 2
942	 63.31	0	1075297..1076070	+	257	187926900	-	Rpic_4734	-	glucose-1-phosphate cytidylyltransferase
943	 66.76	0	1076070..1077161	+	363	187926901	-	Rpic_4735	-	CDP-glucose 4,6-dehydratase
944	 63.80	0	1077158..1077751	+	197	187926902	-	Rpic_4736	-	dTDP-4-dehydrorhamnose 3,5-epimerase
945	 63.37	0	1077748..1078899	+	383	187926903	-	Rpic_4737	-	Glutamine--scyllo-inositol transaminase
946	 65.48	0	1078884..1079726	+	280	187926904	-	Rpic_4738	-	Phytanoyl-CoA dioxygenase
947	 62.33	0	1079729..1080904	+	391	187926905	-	Rpic_4739	-	Methyltransferase type 12
948	 63.18	0	1080901..1081416	+	171	187926906	-	Rpic_4740	-	GCN5-related N-acetyltransferase
949	 62.32	0	1081413..1082126	+	237	187926907	-	Rpic_4741	-	WbqC-like family protein
950	 61.80	0	1082123..1083397	+	424	187926908	-	Rpic_4742	-	glycosyl transferase family 2
951	 59.63	-1	1083416..1083742	+	108	187926909	-	Rpic_4743	-	flagellar hook-basal body complex subunit FliE
952	 65.72	0	1083885..1084307	+	140	187926910	-	Rpic_4744	-	OsmC family protein
953	 66.22	0	1084373..1084816	+	147	187926911	-	Rpic_4745	-	transcriptional regulator, MarR family
954	 64.75	0	1084803..1085897	+	364	187926912	-	Rpic_4746	-	glycosyl transferase family 2
955	 66.39	0	1085908..1086264	-	118	187926913	-	Rpic_4747	-	putative flagellar protein FliT
956	 67.38	0	1086320..1086742	-	140	187926914	-	Rpic_4748	-	flagellar protein FliS
957	 63.68	0	1086793..1088835	-	680	187926915	-	Rpic_4749	-	flagellar hook-associated 2 domain protein
958	 60.10	-1	1089022..1089843	-	273	187926916	-	Rpic_4750	-	flagellin domain protein
959	 64.62	0	1090242..1090877	+	211	187926917	-	Rpic_4751	-	two component transcriptional regulator, LuxR family
960	 66.31	0	1090878..1092836	-	652	187926918	-	Rpic_4752	-	diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
961	 64.04	0	1093112..1093606	+	164	187926919	-	Rpic_4753	-	flagellar basal body-associated protein FliL
962	 61.51	0	1093608..1094615	+	335	187926920	-	Rpic_4754	-	flagellar motor switch protein FliM
963	 64.68	0	1094605..1095057	+	150	187926921	-	Rpic_4755	-	flagellar motor switch protein FliN
964	 69.53	+1	1095117..1095500	+	127	187926922	-	Rpic_4756	-	flagellar biosynthesis protein FliO
965	 63.33	0	1095497..1096246	+	249	187926923	-	Rpic_4757	-	flagellar biosynthetic protein FliP
966	 60.37	-1	1096256..1096525	+	89	187926924	-	Rpic_4758	-	flagellar biosynthetic protein FliQ
967	 65.53	0	1096559..1097347	+	262	187926925	-	Rpic_4759	-	flagellar biosynthetic protein FliR
968	 68.33	+1	1097864..1098466	+	200	187926926	-	Rpic_4760	-	hypothetical protein
969	 65.06	0	1098451..1099257	+	268	187926927	-	Rpic_4761	-	phospholipid/glycerol acyltransferase
970	 53.88	-2	1099232..1099489	+	85	187926928	-	Rpic_4762	-	putative acyl-carrier protein
971	 58.94	-1	1099535..1099780	+	81	187926929	-	Rpic_4763	-	phosphopantetheine-binding
972	 65.41	0	1099785..1100423	+	212	187926930	-	Rpic_4764	-	hypothetical protein
973	 66.91	0	1100420..1102093	+	557	187926931	-	Rpic_4765	-	AMP-dependent synthetase and ligase
974	 66.09	0	1102090..1103811	+	573	187926932	-	Rpic_4766	-	glycosyl transferase family 2
975	 67.29	0	1103804..1105402	+	532	187926933	-	Rpic_4767	-	Histidine ammonia-lyase
976	 63.68	0	1105389..1105823	+	144	187926934	-	Rpic_4768	-	thioesterase superfamily protein
977	 65.75	0	1105811..1106467	+	218	187926935	-	Rpic_4769	-	conserved hypothetical signal peptide protein
978	 67.46	0	1106464..1108872	+	802	187926936	-	Rpic_4770	-	putative lipoprotein transmembrane
979	 66.75	0	1108869..1110050	+	393	187926937	-	Rpic_4771	-	Beta-ketoacyl synthase
980	 64.35	0	1110053..1110526	+	157	187926938	-	Rpic_4772	-	Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ
981	 66.67	0	1110523..1111251	+	242	187926939	-	Rpic_4773	-	3-oxoacyl-(acyl-carrier-protein) reductase
982	 66.91	0	1111251..1112477	+	408	187926940	-	Rpic_4774	-	Beta-ketoacyl synthase
983	 67.67	0	1112477..1113775	+	432	187926941	-	Rpic_4775	-	Beta-ketoacyl synthase
984	 63.45	0	1113772..1114206	+	144	187926942	-	Rpic_4776	-	conserved hypothetical signal peptide protein
985	 58.39	-1	1114264..1114698	+	144	187926943	-	Rpic_4777	-	putative excinuclease, ATPase subunit
986	 61.04	-1	1114743..1115471	-	242	187926944	-	Rpic_4778	-	Methyltransferase type 11
987	 64.29	0	1115623..1116882	+	419	187926945	-	Rpic_4779	-	monooxygenase FAD-binding
988	 65.32	0	1116930..1117673	-	247	187926946	-	Rpic_4780	-	protein of unknown function DUF1275
989	 61.98	0	1117736..1118695	-	319	187926947	-	Rpic_4781	-	flagellar hook-associated protein 3
990	 62.85	0	1118763..1120700	-	645	187926948	-	Rpic_4782	-	flagellar hook-associated protein FlgK
991	 66.02	0	1120816..1121901	-	361	187926949	-	Rpic_4783	-	flagellar rod assembly protein/muramidase FlgJ
992	 64.61	0	1121918..1123036	-	372	187926950	-	Rpic_4784	-	flagellar P-ring protein
993	 67.34	0	1123047..1123790	-	247	187926951	-	Rpic_4785	-	flagellar L-ring protein
994	 63.60	0	1123824..1124606	-	260	187926952	-	Rpic_4786	-	flagellar basal-body rod protein FlgG
995	 63.28	0	1124643..1125380	-	245	187926953	-	Rpic_4787	-	flagellar basal-body rod protein FlgF
996	 63.44	0	1125410..1126618	-	402	187926954	-	Rpic_4788	-	flagellar basal body FlaE domain protein
997	 62.50	0	1126658..1127305	-	215	187926955	-	Rpic_4789	-	flagellar hook capping protein
998	 62.25	0	1127343..1127750	-	135	187926956	-	Rpic_4790	-	flagellar basal-body rod protein FlgC
999	 62.94	0	1127908..1128363	-	151	187926957	-	Rpic_4791	-	flagellar basal-body rod protein FlgB
1000	 68.84	+1	1128759..1129634	+	291	187926958	-	Rpic_4792	-	flagella basal body P-ring formation protein FlgA
1001	 69.16	+1	1129746..1130066	+	106	187926959	-	Rpic_4793	-	anti-sigma-28 factor, FlgM
1002	 67.32	0	1130188..1130649	+	153	187926960	-	Rpic_4794	-	FlgN family protein
1003	 63.96	0	1131133..1131798	+	221	187926961	-	Rpic_4795	-	two component transcriptional regulator, LuxR family
1004	 63.36	0	1131911..1132969	-	352	187926962	-	Rpic_4796	-	porin Gram-negative type
1005	 68.31	+1	1133230..1133958	-	242	187926963	-	Rpic_4797	-	transcriptional regulator, GntR family
1006	 61.17	-1	1134080..1134370	-	96	187926964	-	Rpic_4798	-	histone family protein nucleoid-structuring protein H-NS
1007	 66.63	0	1135305..1137959	+	884	187926965	-	Rpic_4799	-	diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
1008	 71.08	+1	1138005..1138208	-	67	187926966	-	Rpic_4800	-	putative osmotically inducible lipoprotein B2 transmembrane
64.67	MEAN

3.41	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.