IslandPath Analysis: Ralstonia pickettii 12J



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 64.67   STD DEV: 3.41
Ralstonia pickettii 12J chromosome 2, complete sequence - 1..1302238
1153 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
767	 64.50	0	883487..886072	-	861	187926725	-	Rpic_4553	-	aconitate hydratase 2
768	 59.86	-1	886445..886738	+	97	187926726	-	Rpic_4554	-	Antibiotic biosynthesis monooxygenase
769	 63.17	0	886852..887796	-	314	187926727	-	Rpic_4555	-	permease of drug/metabolite transporter
770	 65.42	0	887919..888797	-	292	187926728	-	Rpic_4556	-	transcriptional regulator, LysR family
771	 68.56	+1	888895..890478	+	527	187926729	-	Rpic_4557	-	NADH/Ubiquinone/plastoquinone (complex I)
772	 67.91	0	890499..893081	+	860	187926730	-	Rpic_4558	-	hypothetical protein
773	 65.91	0	893148..894335	+	395	187926731	-	Rpic_4559	-	acyltransferase 3
774	 66.67	0	894325..895143	-	272	187926732	-	Rpic_4560	-	Methyltransferase type 11
775	 64.10	0	895854..896477	+	207	187926733	-	Rpic_4562	-	transcriptional regulator, TetR family
776	 65.48	0	896462..897556	-	364	187926734	-	Rpic_4563	-	phenylacetate-CoA oxygenase/reductase, PaaK subunit
777	 69.38	+1	897566..898117	-	183	187926735	-	Rpic_4564	-	phenylacetate-CoA oxygenase, PaaJ subunit
778	 65.17	0	898111..898911	-	266	187926736	-	Rpic_4565	-	phenylacetate-CoA oxygenase, PaaI subunit
779	 60.76	-1	898921..899208	-	95	187926737	-	Rpic_4566	-	phenylacetate-CoA oxygenase, PaaH subunit
780	 63.92	0	899225..900244	-	339	187926738	-	Rpic_4567	-	phenylacetate-CoA oxygenase, PaaG subunit
781	 66.32	0	900389..901837	-	482	187926739	-	Rpic_4568	-	drug resistance transporter, EmrB/QacA subfamily
782	 61.57	0	901937..902368	-	143	187926740	-	Rpic_4569	-	3-demethylubiquinone-9 3-methyltransferase
783	 63.28	0	902517..902900	-	127	187926741	-	Rpic_4570	-	Ketosteroid isomerase-like protein
784	 68.37	+1	903022..903666	+	214	187926742	-	Rpic_4571	-	transcriptional regulator, TetR family
785	 62.84	0	903743..904264	+	173	187926743	-	Rpic_4572	-	putative transmembrane protein
786	 62.25	0	904319..905269	-	316	187926744	-	Rpic_4573	-	response regulator receiver modulated CheW protein
787	 59.12	-1	906009..907307	-	432	187926745	-	Rpic_4575	-	hypothetical protein
788	 56.36	-2	907304..908341	-	345	187926746	-	Rpic_4576	-	AAA ATPase
789	 56.97	-2	908351..911053	-	900	187926747	-	Rpic_4577	-	Integrase catalytic region
790	 59.00	-1	911202..911501	+	99	187926748	-	Rpic_4578	-	hypothetical protein
791	 58.28	-1	911565..912053	-	162	187926749	-	Rpic_4579	-	hypothetical protein
792	 53.85	-2	912336..912725	+	129	187926750	-	Rpic_4580	-	hypothetical protein
793	 56.97	-2	913000..913329	-	109	187926751	-	Rpic_4581	-	hypothetical protein
794	 60.78	-1	913687..913839	-	50	187926752	-	Rpic_4582	-	hypothetical protein
795	 53.26	-2	914093..914383	-	96	187926753	-	Rpic_4583	-	hypothetical protein
796	 56.61	-2	914690..915703	-	337	187926754	-	Rpic_4584	-	hypothetical protein
797	 50.20	-2	915706..916713	-	335	187926755	-	Rpic_4585	-	hypothetical protein
798	 65.56	0	918105..918830	-	241	187926756	-	Rpic_4587	-	17 kDa surface antigen
799	 58.33	-1	919197..919400	-	67	187926757	-	Rpic_4588	-	hypothetical protein
800	 62.09	0	920374..920766	+	130	187926758	-	Rpic_4589	-	hypothetical protein
801	 56.37	-2	920934..921584	+	216	187926759	-	Rpic_4590	-	hypothetical protein
802	 56.44	-2	921848..922150	-	100	187926760	-	Rpic_4591	-	hypothetical protein
803	 57.18	-2	922432..923190	-	252	187926761	-	Rpic_4592	-	protein of unknown function DUF347
804	 58.75	-1	923899..925212	+	437	187926762	-	Rpic_4594	-	major facilitator superfamily MFS_1
805	 54.19	-2	925330..925890	-	186	187926763	-	Rpic_4595	-	alkylhydroperoxidase like protein, AhpD family
806	 55.82	-2	925934..926182	-	82	187926764	-	Rpic_4596	-	hypothetical protein
807	 61.23	-1	926216..926767	-	183	187926765	-	Rpic_4597	-	RNA polymerase, sigma-24 subunit, ECF subfamily
808	 59.05	-1	926771..926980	-	69	187926766	-	Rpic_4598	-	hypothetical protein
809	 60.09	-1	927086..927526	-	146	187926767	-	Rpic_4599	-	hypothetical protein
810	 61.45	0	927639..928367	-	242	187926768	-	Rpic_4600	-	cytochrome c biogenesis protein transmembrane region
811	 57.11	-2	928367..928753	-	128	187926769	-	Rpic_4601	-	Thioredoxin domain
812	 59.58	-1	928937..929176	+	79	187926770	-	Rpic_4602	-	hypothetical protein
813	 58.71	-1	929146..929874	+	242	187926771	-	Rpic_4603	-	hypothetical protein
814	 60.44	-1	930187..931086	-	299	187926772	-	Rpic_4604	-	transcriptional regulator, LysR family
815	 55.38	-2	931152..931718	+	188	187926773	-	Rpic_4605	-	hypothetical protein
816	 59.35	-1	932054..932422	+	122	187926774	-	Rpic_4607	-	copper resistance protein CopC
817	 62.33	0	932422..933366	+	314	187926775	-	Rpic_4608	-	copper resistance D domain protein
818	 62.09	0	933578..935938	+	786	187926776	-	Rpic_4609	-	heavy metal translocating P-type ATPase
819	 63.18	0	936293..937123	-	276	187926777	-	Rpic_4610	-	disulfide isomerase/thiol-disulfide oxidase
820	 61.47	0	937217..938332	+	371	187926778	-	Rpic_4611	-	transcriptional regulator, TetR family
821	 61.37	0	938591..940423	+	610	187926779	-	Rpic_4612	-	diguanylate cyclase/phosphodiesterase
822	 63.02	0	940699..942123	+	474	187926780	-	Rpic_4613	-	Phospholipase C
823	 64.77	0	942127..943341	+	404	187926781	-	Rpic_4614	-	phosphoesterase
824	 66.50	0	943496..944722	+	408	187926782	-	Rpic_4615	-	chromate transporter, chromate ion transporter (CHR) family
825	 58.85	-1	944985..945176	-	63	187926783	-	Rpic_4616	-	4-oxalocrotonate tautomerase family enzyme
826	 63.04	0	945221..946267	-	348	187926784	-	Rpic_4617	-	4-hydroxy-2-oxovalerate aldolase
827	 65.49	0	946281..947216	-	311	187926785	-	Rpic_4618	-	acetaldehyde dehydrogenase (acetylating)
828	 62.88	0	947254..948045	-	263	187926786	-	Rpic_4619	-	4-oxalocrotonate decarboxylase
829	 65.52	0	948075..948857	-	260	187926787	-	Rpic_4620	-	2-oxopent-4-enoate hydratase
830	 67.02	0	948883..949734	-	283	187926788	-	Rpic_4621	-	alpha/beta hydrolase fold
831	 65.98	0	949731..951185	-	484	187926789	-	Rpic_4622	-	2-hydroxymuconic semialdehyde dehydrogenase
832	 69.32	+1	951235..951687	-	150	187926790	-	Rpic_4623	-	protein of unknown function DUF336
833	 63.92	0	951746..952690	-	314	187926791	-	Rpic_4624	-	catechol 2,3 dioxygenase
834	 66.39	0	952714..953079	-	121	187926792	-	Rpic_4625	-	ferredoxin
835	 67.04	0	953095..954159	-	354	187926793	-	Rpic_4626	-	Oxidoreductase FAD-binding domain protein
836	 63.66	0	954163..954528	-	121	187926794	-	Rpic_4627	-	Phenol hydroxylase conserved region
837	 60.32	-1	954525..956069	-	514	187926795	-	Rpic_4628	-	methane/phenol/toluene hydroxylase
838	 61.11	-1	956115..956384	-	89	187926796	-	Rpic_4629	-	monooxygenase component MmoB/DmpM
839	 67.76	0	956420..957427	-	335	187926797	-	Rpic_4630	-	Phenol 2-monooxygenase
840	 62.38	0	957483..957692	-	69	187926798	-	Rpic_4631	-	Phenol hydroxylase subunit
841	 62.28	0	958407..959912	+	501	187926799	-	Rpic_4632	-	methane/phenol/toluene hydroxylase
842	 61.30	0	959937..960197	+	86	187926800	-	Rpic_4633	-	Toluene-4-monooxygenase system B
843	 63.69	0	960205..960540	+	111	187926801	-	Rpic_4634	-	Rieske (2Fe-2S) domain protein
844	 60.32	-1	960560..960874	+	104	187926802	-	Rpic_4635	-	monooxygenase component MmoB/DmpM
845	 66.77	0	960887..961876	+	329	187926803	-	Rpic_4636	-	methane/phenol/toluene hydroxylase
846	 68.70	+1	961914..962945	+	343	187926804	-	Rpic_4637	-	Oxidoreductase FAD-binding domain protein
847	 65.32	0	963199..964977	+	592	187926805	-	Rpic_4638	-	putative sigma54 specific transcriptional regulator
848	 64.12	0	965041..966417	-	458	187926806	-	Rpic_4639	-	membrane protein involved in aromatic hydrocarbon degradation
849	 67.14	0	966863..968557	+	564	187926807	-	Rpic_4640	-	putative sigma54 specific transcriptional regulator
850	 66.67	0	968554..969303	+	249	187926808	-	Rpic_4641	-	transcriptional regulator, GntR family
851	 66.85	0	969388..972048	-	886	187926809	-	Rpic_4642	-	formate dehydrogenase, alpha subunit
852	 68.88	+1	972036..973478	-	480	187926810	-	Rpic_4643	-	NADH dehydrogenase (quinone)
853	 66.55	0	973724..975490	+	588	187926811	-	Rpic_4644	-	AMP-dependent synthetase and ligase
854	 66.67	0	975487..976512	+	341	187926812	-	Rpic_4645	-	pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit
855	 67.48	0	976509..977492	+	327	187926813	-	Rpic_4646	-	Transketolase central region
856	 67.55	0	977530..978657	+	375	187926814	-	Rpic_4647	-	catalytic domain of components of various dehydrogenase complexes
857	 62.22	0	978654..978923	+	89	187926815	-	Rpic_4648	-	hypothetical protein
858	 62.94	0	978978..979406	-	142	187926816	-	Rpic_4649	-	hypothetical protein
859	 61.24	-1	979488..980888	-	466	187926817	-	Rpic_4650	-	multi-sensor signal transduction histidine kinase
860	 59.59	-1	981255..981593	+	112	187926818	-	Rpic_4651	-	sigma 54 modulation protein, putative
861	 61.67	0	981597..981836	+	79	187926819	-	Rpic_4652	-	hypothetical protein
862	 67.03	0	982190..983827	+	545	187926820	-	Rpic_4653	-	chaperonin GroEL
863	 66.81	0	983869..985230	+	453	187926821	-	Rpic_4654	-	nicotinate phosphoribosyltransferase
864	 64.58	0	985338..986009	-	223	187926822	-	Rpic_4655	-	protein of unknown function DUF542 ScdA domain protein
865	 68.95	+1	986174..987709	+	511	187926823	-	Rpic_4656	-	transcriptional regulator, NifA subfamily, Fis Family
866	 63.89	0	987896..989947	+	683	187926824	-	Rpic_4657	-	anaerobic ribonucleoside-triphosphate reductase
64.67	MEAN

3.41	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.