IslandPathversion 1.0

IslandPath Analysis: Ralstonia pickettii 12J



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 64.67 STD DEV: 3.41
Ralstonia pickettii 12J chromosome 2, complete sequence - 1..1302238
1153 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
717	 65.92	0	832095..832898	-	267	187926675	-	Rpic_4503	-	Aspartate dehydrogenase
718	 66.26	0	832931..834670	-	579	187926676	-	Rpic_4504	-	thiamine pyrophosphate protein domain protein TPP-binding
719	 65.43	0	834663..835472	-	269	187926677	-	Rpic_4505	-	short-chain dehydrogenase/reductase SDR
720	 64.49	0	835469..836296	-	275	187926678	-	Rpic_4506	-	transcriptional regulator, IclR family
721	 65.23	0	836309..837211	-	300	187926679	-	Rpic_4507	-	alpha/beta hydrolase fold
722	 62.20	0	837216..837752	-	178	187926680	-	Rpic_4508	-	Cupin 2 conserved barrel domain protein
723	 66.80	0	837785..838558	-	257	187926681	-	Rpic_4509	-	short-chain dehydrogenase/reductase SDR
724	 63.95	0	838551..839618	-	355	187926682	-	Rpic_4510	-	Rieske (2Fe-2S) domain protein
725	 66.34	0	839699..840004	-	101	187926683	-	Rpic_4511	-	hypothetical protein
726	 62.08	0	840187..840753	-	188	187926684	-	Rpic_4512	-	transcriptional regulator, TetR family
727	 65.17	0	840843..841244	+	133	187926685	-	Rpic_4513	-	transcriptional regulator, AraC family
728	 62.26	0	841293..841769	-	158	187926686	-	Rpic_4514	-	protein of unknown function DUF1348
729	 61.32	0	841913..842380	-	155	187926687	-	Rpic_4515	-	GCN5-related N-acetyltransferase
730	 61.51	0	842788..843039	-	83	187926688	-	Rpic_4516	-	hypothetical protein
731	 66.45	0	843146..844081	+	311	187926689	-	Rpic_4517	-	transcriptional regulator, LysR family
732	 66.38	0	844191..845219	+	342	187926690	-	Rpic_4518	-	alpha/beta hydrolase fold
733	 61.33	0	845360..845584	+	74	187926691	-	Rpic_4519	-	hypothetical protein
734	 67.54	0	845612..846184	-	190	187926692	-	Rpic_4520	-	putative transmembrane protein
735	 64.49	0	846250..847122	-	290	187926693	-	Rpic_4521	-	aminotransferase class IV
736	 67.64	0	847283..847795	+	170	187926694	-	Rpic_4522	-	GCN5-related N-acetyltransferase
737	 66.04	0	847891..848208	+	105	187926695	-	Rpic_4523	-	putative signal peptide protein
738	 63.58	0	848212..848955	-	247	187926696	-	Rpic_4524	-	ABC transporter related
739	 64.64	0	848967..850793	-	608	187926697	-	Rpic_4525	-	ABC transporter related
740	 64.77	0	850798..851850	-	350	187926698	-	Rpic_4526	-	inner-membrane translocator
741	 67.57	0	851965..852852	-	295	187926699	-	Rpic_4527	-	transcriptional regulator, IclR family
742	 65.10	0	853119..854078	+	319	187926700	-	Rpic_4528	-	beta-lactamase domain protein
743	 66.13	0	854135..855814	+	559	187926701	-	Rpic_4529	-	monooxygenase FAD-binding
744	 63.29	0	855820..856026	+	68	187926702	-	Rpic_4530	-	hypothetical protein
745	 64.57	0	856067..857116	-	349	187926703	-	Rpic_4531	-	aldo/keto reductase
746	 65.69	0	857316..858233	-	305	187926704	-	Rpic_4532	-	transcriptional regulator, LysR family
747	 47.75	-2	858258..858368	-	36	187926705	-	Rpic_4533	-	hypothetical protein
748	 66.59	0	858510..859856	+	448	187926706	-	Rpic_4534	-	homogentisate 1,2-dioxygenase
749	 65.33	0	860163..861434	+	423	187926707	-	Rpic_4535	-	fumarylacetoacetase
750	 63.85	0	861474..862112	-	212	187926708	-	Rpic_4536	-	FMN-binding negative transcriptional regulator
751	 66.29	0	862236..863546	-	436	187926709	-	Rpic_4537	-	ABC transporter related
752	 66.03	0	863552..865285	-	577	187926710	-	Rpic_4538	-	binding-protein-dependent transport systems inner membrane component
753	 64.68	0	865423..866580	-	385	187926711	-	Rpic_4539	-	acyl-CoA dehydrogenase domain protein
754	 67.10	0	866693..867613	+	306	187926712	-	Rpic_4540	-	transcriptional regulator, LysR family
755	 65.69	0	867614..868531	-	305	187926713	-	Rpic_4541	-	transcriptional regulator, LysR family
756	 66.32	0	868652..870982	+	776	187926714	-	Rpic_4542	-	5-methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase
757	 65.96	0	871099..874200	-	1033	187926715	-	Rpic_4543	-	acriflavin resistance protein
758	 70.26	+1	874197..875336	-	379	187926716	-	Rpic_4544	-	efflux transporter, RND family, MFP subunit
759	 70.15	+1	875333..876910	-	525	187926717	-	Rpic_4545	-	RND efflux system, outer membrane lipoprotein, NodT family
760	 59.62	-1	877043..877198	-	51	187926718	-	Rpic_4546	-	hypothetical protein
761	 71.88	+2	877385..878266	+	293	187926719	-	Rpic_4547	-	NADP oxidoreductase coenzyme F420-dependent
762	 69.47	+1	878353..879567	+	404	187926720	-	Rpic_4548	-	major facilitator superfamily MFS_1
763	 64.90	0	879578..880144	-	188	187926721	-	Rpic_4549	-	DNA-3-methyladenine glycosylase I
764	 62.86	0	880156..881127	-	323	187926722	-	Rpic_4550	-	Mg2 transporter protein CorA family protein
765	 65.26	0	881146..881643	-	165	187926723	-	Rpic_4551	-	transcriptional regulator, MarR family
766	 65.03	0	881706..883298	-	530	187926724	-	Rpic_4552	-	major facilitator superfamily MFS_1
767	 64.50	0	883487..886072	-	861	187926725	-	Rpic_4553	-	aconitate hydratase 2
768	 59.86	-1	886445..886738	+	97	187926726	-	Rpic_4554	-	Antibiotic biosynthesis monooxygenase
769	 63.17	0	886852..887796	-	314	187926727	-	Rpic_4555	-	permease of drug/metabolite transporter
770	 65.42	0	887919..888797	-	292	187926728	-	Rpic_4556	-	transcriptional regulator, LysR family
771	 68.56	+1	888895..890478	+	527	187926729	-	Rpic_4557	-	NADH/Ubiquinone/plastoquinone (complex I)
772	 67.91	0	890499..893081	+	860	187926730	-	Rpic_4558	-	hypothetical protein
773	 65.91	0	893148..894335	+	395	187926731	-	Rpic_4559	-	acyltransferase 3
774	 66.67	0	894325..895143	-	272	187926732	-	Rpic_4560	-	Methyltransferase type 11
775	 64.10	0	895854..896477	+	207	187926733	-	Rpic_4562	-	transcriptional regulator, TetR family
776	 65.48	0	896462..897556	-	364	187926734	-	Rpic_4563	-	phenylacetate-CoA oxygenase/reductase, PaaK subunit
777	 69.38	+1	897566..898117	-	183	187926735	-	Rpic_4564	-	phenylacetate-CoA oxygenase, PaaJ subunit
778	 65.17	0	898111..898911	-	266	187926736	-	Rpic_4565	-	phenylacetate-CoA oxygenase, PaaI subunit
779	 60.76	-1	898921..899208	-	95	187926737	-	Rpic_4566	-	phenylacetate-CoA oxygenase, PaaH subunit
780	 63.92	0	899225..900244	-	339	187926738	-	Rpic_4567	-	phenylacetate-CoA oxygenase, PaaG subunit
781	 66.32	0	900389..901837	-	482	187926739	-	Rpic_4568	-	drug resistance transporter, EmrB/QacA subfamily
782	 61.57	0	901937..902368	-	143	187926740	-	Rpic_4569	-	3-demethylubiquinone-9 3-methyltransferase
783	 63.28	0	902517..902900	-	127	187926741	-	Rpic_4570	-	Ketosteroid isomerase-like protein
784	 68.37	+1	903022..903666	+	214	187926742	-	Rpic_4571	-	transcriptional regulator, TetR family
785	 62.84	0	903743..904264	+	173	187926743	-	Rpic_4572	-	putative transmembrane protein
786	 62.25	0	904319..905269	-	316	187926744	-	Rpic_4573	-	response regulator receiver modulated CheW protein
787	 59.12	-1	906009..907307	-	432	187926745	-	Rpic_4575	-	hypothetical protein
788	 56.36	-2	907304..908341	-	345	187926746	-	Rpic_4576	-	AAA ATPase
789	 56.97	-2	908351..911053	-	900	187926747	-	Rpic_4577	-	Integrase catalytic region
790	 59.00	-1	911202..911501	+	99	187926748	-	Rpic_4578	-	hypothetical protein
791	 58.28	-1	911565..912053	-	162	187926749	-	Rpic_4579	-	hypothetical protein
792	 53.85	-2	912336..912725	+	129	187926750	-	Rpic_4580	-	hypothetical protein
793	 56.97	-2	913000..913329	-	109	187926751	-	Rpic_4581	-	hypothetical protein
794	 60.78	-1	913687..913839	-	50	187926752	-	Rpic_4582	-	hypothetical protein
795	 53.26	-2	914093..914383	-	96	187926753	-	Rpic_4583	-	hypothetical protein
796	 56.61	-2	914690..915703	-	337	187926754	-	Rpic_4584	-	hypothetical protein
797	 50.20	-2	915706..916713	-	335	187926755	-	Rpic_4585	-	hypothetical protein
798	 65.56	0	918105..918830	-	241	187926756	-	Rpic_4587	-	17 kDa surface antigen
799	 58.33	-1	919197..919400	-	67	187926757	-	Rpic_4588	-	hypothetical protein
800	 62.09	0	920374..920766	+	130	187926758	-	Rpic_4589	-	hypothetical protein
801	 56.37	-2	920934..921584	+	216	187926759	-	Rpic_4590	-	hypothetical protein
802	 56.44	-2	921848..922150	-	100	187926760	-	Rpic_4591	-	hypothetical protein
803	 57.18	-2	922432..923190	-	252	187926761	-	Rpic_4592	-	protein of unknown function DUF347
804	 58.75	-1	923899..925212	+	437	187926762	-	Rpic_4594	-	major facilitator superfamily MFS_1
805	 54.19	-2	925330..925890	-	186	187926763	-	Rpic_4595	-	alkylhydroperoxidase like protein, AhpD family
806	 55.82	-2	925934..926182	-	82	187926764	-	Rpic_4596	-	hypothetical protein
807	 61.23	-1	926216..926767	-	183	187926765	-	Rpic_4597	-	RNA polymerase, sigma-24 subunit, ECF subfamily
808	 59.05	-1	926771..926980	-	69	187926766	-	Rpic_4598	-	hypothetical protein
809	 60.09	-1	927086..927526	-	146	187926767	-	Rpic_4599	-	hypothetical protein
810	 61.45	0	927639..928367	-	242	187926768	-	Rpic_4600	-	cytochrome c biogenesis protein transmembrane region
811	 57.11	-2	928367..928753	-	128	187926769	-	Rpic_4601	-	Thioredoxin domain
812	 59.58	-1	928937..929176	+	79	187926770	-	Rpic_4602	-	hypothetical protein
813	 58.71	-1	929146..929874	+	242	187926771	-	Rpic_4603	-	hypothetical protein
814	 60.44	-1	930187..931086	-	299	187926772	-	Rpic_4604	-	transcriptional regulator, LysR family
815	 55.38	-2	931152..931718	+	188	187926773	-	Rpic_4605	-	hypothetical protein
816	 59.35	-1	932054..932422	+	122	187926774	-	Rpic_4607	-	copper resistance protein CopC
64.67	MEAN

3.41	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.