IslandPathversion 1.0

IslandPath Analysis: Ralstonia pickettii 12J



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 64.67 STD DEV: 3.41
Ralstonia pickettii 12J chromosome 2, complete sequence - 1..1302238
1153 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
554	 67.92	0	642769..643962	-	397	187926512	-	Rpic_4335	-	integrase family protein
555	 62.93	0	643997..644638	-	213	187926513	-	Rpic_4336	-	hypothetical protein
556	 63.77	0	644653..644928	-	91	187926514	-	Rpic_4337	-	plasmid stabilization system
557	 69.70	+1	644928..645191	-	87	187926515	-	Rpic_4338	-	transcriptional regulator, CopG family
558	 66.67	0	645243..645974	-	243	187926516	-	Rpic_4339	-	hypothetical protein
559	 66.67	0	646188..647225	+	345	187926517	-	Rpic_4340	-	hypothetical protein
560	 55.78	-2	647610..647912	-	100	187926518	-	Rpic_4341	-	hypothetical protein
561	 58.17	-1	648051..648356	+	101	187926519	-	Rpic_4342	-	hypothetical protein
562	 58.19	-1	648416..648592	+	58	187926520	-	Rpic_4343	-	hypothetical protein
563	 58.17	-1	648610..648915	+	101	187926521	-	Rpic_4344	-	hypothetical protein
564	 54.88	-2	648984..649229	+	81	187926522	-	Rpic_4345	-	hypothetical protein
565	 62.38	0	649234..649443	+	69	187926523	-	Rpic_4346	-	hypothetical protein
566	 59.27	-1	649516..651111	+	531	187926524	-	Rpic_4347	-	hypothetical protein
567	 58.18	-1	651127..651456	+	109	187926525	-	Rpic_4348	-	minor coat protein
568	 59.83	-1	651461..652792	+	443	187926526	-	Rpic_4349	-	Zonular occludens toxin
569	 60.20	-1	653239..654120	+	293	187926527	-	Rpic_4350	-	hypothetical protein
570	 61.55	0	654356..655039	-	227	187926528	-	Rpic_4351	-	hypothetical protein
571	 60.51	-1	655017..657194	-	725	187926529	-	Rpic_4352	-	type I phosphodiesterase/nucleotide pyrophosphatase
572	 60.14	-1	657655..658620	+	321	187926530	-	Rpic_4353	-	transcriptional regulator, MerR family
573	 59.89	-1	658733..659485	+	250	187926531	-	Rpic_4354	-	short-chain dehydrogenase/reductase SDR
574	 60.53	-1	659482..659937	+	151	187926532	-	Rpic_4355	-	hypothetical protein
575	 55.14	-2	659967..660443	+	158	187926533	-	Rpic_4356	-	succinate dehydrogenase, cytochrome b556 subunit
576	 58.74	-1	660454..660819	+	121	187926534	-	Rpic_4357	-	succinate dehydrogenase, hydrophobic membrane anchor protein
577	 64.36	0	660823..662601	+	592	187926535	-	Rpic_4358	-	succinate dehydrogenase, flavoprotein subunit
578	 61.40	0	662624..663325	+	233	187926536	-	Rpic_4359	-	succinate dehydrogenase and fumarate reductase iron-sulfur protein
579	 58.33	-1	663476..664207	-	243	187926537	-	Rpic_4360	-	hypothetical protein
580	 58.29	-1	664204..664836	-	210	187926538	-	Rpic_4361	-	RNA polymerase, sigma-24 subunit, ECF subfamily
581	 58.29	-1	664979..665563	-	194	187926539	-	Rpic_4362	-	beta-Ig-H3/fasciclin
582	 59.97	-1	666070..666651	+	193	187926540	-	Rpic_4363	-	hypothetical protein
583	 63.61	0	666648..667334	+	228	187926541	-	Rpic_4364	-	hypothetical protein
584	 61.78	0	667604..668074	+	156	187926542	-	Rpic_4365	-	hypothetical protein
585	 64.44	0	668002..668181	-	59	187926543	-	Rpic_4366	-	hypothetical protein
586	 61.73	0	668197..669372	-	391	187926544	-	Rpic_4367	-	efflux transporter, RND family, MFP subunit
587	 59.54	-1	669369..671738	-	789	187926545	-	Rpic_4368	-	protein of unknown function DUF214
588	 61.28	0	671732..672436	-	234	187926546	-	Rpic_4369	-	ABC transporter related
589	 58.08	-1	672451..672741	-	96	187926547	-	Rpic_4370	-	hypothetical protein
590	 59.22	-1	672975..673619	-	214	187926548	-	Rpic_4371	-	putative transmembrane protein
591	 63.44	0	673625..675916	-	763	187926549	-	Rpic_4372	-	heavy metal translocating P-type ATPase
592	 62.29	0	675952..676476	-	174	187926550	-	Rpic_4373	-	cytochrome B561
593	 67.30	0	676522..677778	-	418	187926551	-	Rpic_4374	-	hypothetical protein
594	 65.51	0	677775..680888	-	1037	187926552	-	Rpic_4375	-	heavy metal efflux pump, CzcA family
595	 67.86	0	680888..681973	-	361	187926553	-	Rpic_4376	-	efflux transporter, RND family, MFP subunit
596	 62.85	0	682272..682742	-	156	187926554	-	Rpic_4377	-	hypothetical protein
597	 63.26	0	682880..684436	-	518	187926555	-	Rpic_4378	-	thymidine phosphorylase
598	 59.86	-1	684438..684716	-	92	187926556	-	Rpic_4379	-	hypothetical protein
599	 62.85	0	684746..685687	-	313	187926557	-	Rpic_4380	-	ribose-phosphate pyrophosphokinase
600	 64.18	0	685684..687048	-	454	187926558	-	Rpic_4381	-	beta-lactamase domain protein
601	 58.39	-1	687067..687489	-	140	187926559	-	Rpic_4382	-	heat shock protein Hsp20
602	 63.47	0	687829..688329	+	166	187926560	-	Rpic_4383	-	hypothetical protein
603	 64.86	0	688344..688565	+	73	187926561	-	Rpic_4384	-	hypothetical protein
604	 60.99	-1	688671..690662	+	663	187926562	-	Rpic_4385	-	ATP-dependent metalloprotease FtsH
605	 63.33	0	690654..691940	-	428	187926563	-	Rpic_4386	-	Erythromycin esterase
606	 63.07	0	692208..692708	+	166	187926564	-	Rpic_4387	-	hypothetical protein
607	 64.84	0	692841..693773	-	310	187926565	-	Rpic_4388	-	1-phosphofructokinase
608	 54.92	-2	693983..694246	+	87	187926566	-	Rpic_4389	-	hypothetical protein
609	 60.62	-1	694295..696694	+	799	187926567	-	Rpic_4390	-	phosphoenolpyruvate synthase
610	 62.80	0	696722..699382	-	886	187926568	-	Rpic_4391	-	formate dehydrogenase, alpha subunit
611	 64.39	0	699370..700947	-	525	187926569	-	Rpic_4392	-	NADH dehydrogenase (quinone)
612	 60.49	-1	701759..703507	+	582	187926570	-	Rpic_4393	-	integral membrane sensor signal transduction histidine kinase
613	 57.88	-1	704052..704597	+	181	187926571	-	Rpic_4395	-	heat shock protein Hsp20
614	 56.14	-2	704812..705153	+	113	187926572	-	Rpic_4396	-	hypothetical protein
615	 60.24	-1	705150..705398	+	82	187926573	-	Rpic_4397	-	hypothetical protein
616	 62.46	0	705471..706136	-	221	187926574	-	Rpic_4398	-	hypothetical protein
617	 62.18	0	706210..706365	+	51	187926575	-	Rpic_4399	-	hypothetical protein
618	 64.29	0	706368..708005	+	545	187926576	-	Rpic_4400	-	chaperonin GroEL
619	 61.19	-1	708068..708505	+	145	187926577	-	Rpic_4401	-	hypothetical protein
620	 59.90	-1	708522..708905	+	127	187926578	-	Rpic_4402	-	hypothetical protein
621	 61.06	-1	708922..710739	-	605	187926579	-	Rpic_4403	-	ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
622	 61.15	-1	710977..711465	+	162	187926580	-	Rpic_4404	-	hypothetical protein
623	 58.40	-1	711679..712041	+	120	187926581	-	Rpic_4405	-	conserved hypothetical signal peptide protein
624	 64.87	0	712094..714484	-	796	187926582	-	Rpic_4406	-	hypothetical protein
625	 62.77	0	714439..715722	-	427	187926583	-	Rpic_4407	-	protein of unknown function DUF187
626	 62.12	0	715694..716485	-	263	187926584	-	Rpic_4408	-	polysaccharide deacetylase
627	 62.46	0	716538..717131	-	197	187926585	-	Rpic_4409	-	Rhomboid family protein
628	 64.49	0	717312..719060	+	582	187926586	-	Rpic_4410	-	PHP domain protein
629	 55.97	-2	719222..719539	+	105	187926587	-	Rpic_4411	-	ribosomal subunit interface protein
630	 62.12	0	719563..720309	-	248	187926588	-	Rpic_4412	-	acetoacetyl-CoA reductase
631	 66.47	0	720317..720820	-	167	187926589	-	Rpic_4413	-	hypothetical protein
632	 63.46	0	720829..721482	-	217	187926590	-	Rpic_4414	-	hypothetical protein
633	 64.07	0	721530..722567	-	345	187926591	-	Rpic_4415	-	Alcohol dehydrogenase GroES domain protein
634	 62.80	0	722695..724245	+	516	187926592	-	Rpic_4416	-	hypothetical protein
635	 58.69	-1	724431..724919	+	162	187926593	-	Rpic_4417	-	hypothetical protein
636	 64.09	0	724942..725406	+	154	187926594	-	Rpic_4418	-	putative signal-transduction protein with CBS domains
637	 65.35	0	725447..726130	+	227	187926595	-	Rpic_4419	-	hypothetical protein
638	 65.28	0	726135..726785	+	216	187926596	-	Rpic_4420	-	phosphoribosyltransferase
639	 62.40	0	726826..729453	-	875	187926597	-	Rpic_4421	-	magnesium-translocating P-type ATPase
640	 66.67	0	729674..731149	-	491	187926598	-	Rpic_4422	-	RND efflux system, outer membrane lipoprotein, NodT family
641	 64.36	0	731146..732231	-	361	187926599	-	Rpic_4423	-	secretion protein HlyD family protein
642	 64.52	0	732228..732926	-	232	187926600	-	Rpic_4424	-	ABC transporter related
643	 59.89	-1	732929..734065	-	378	187926601	-	Rpic_4425	-	protein of unknown function DUF214
644	 63.27	0	734210..734857	-	215	187926602	-	Rpic_4426	-	two component transcriptional regulator, LuxR family
645	 62.42	0	734854..736242	-	462	187926603	-	Rpic_4427	-	multi-sensor signal transduction histidine kinase
646	 60.86	-1	736497..737288	+	263	187926604	-	Rpic_4428	-	transcriptional regulator, Crp/Fnr family
647	 63.73	0	737367..738014	-	215	187926605	-	Rpic_4429	-	transport-associated
648	 61.71	0	738045..738407	-	120	187926606	-	Rpic_4430	-	transcriptional regulator, TraR/DksA family
649	 63.65	0	738455..738985	-	176	187926607	-	Rpic_4431	-	hypothetical protein
650	 65.29	0	739032..739685	-	217	187926608	-	Rpic_4432	-	transport-associated
651	 63.57	0	739719..740558	-	279	187926609	-	Rpic_4433	-	UspA domain protein
652	 61.68	0	740599..741099	-	166	187926610	-	Rpic_4434	-	UspA domain protein
653	 65.17	0	741386..741853	+	155	187926611	-	Rpic_4435	-	putative signal-transduction protein with CBS domains
64.67	MEAN

3.41	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.