IslandPathversion 1.0

IslandPath Analysis: Ralstonia pickettii 12J



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 64.67 STD DEV: 3.41
Ralstonia pickettii 12J chromosome 2, complete sequence - 1..1302238
1153 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
497	 53.43	-2	572259..572462	-	67	187926455	-	Rpic_4276	-	cold-shock DNA-binding domain protein
498	 62.08	0	572814..574709	+	631	187926456	-	Rpic_4277	-	K potassium transporter
499	 65.20	0	574728..575543	-	271	187926457	-	Rpic_4278	-	formate dehydrogenase family accessory protein FdhD
500	 70.73	+1	575540..575785	-	81	187926458	-	Rpic_4279	-	hypothetical protein
501	 65.85	0	575785..578124	-	779	187926459	-	Rpic_4280	-	oxidoreductase alpha (molybdopterin) subunit
502	 64.41	0	578153..579880	-	575	187926460	-	Rpic_4281	-	major facilitator superfamily MFS_1
503	 63.12	0	580089..580568	-	159	187926461	-	Rpic_4282	-	Hpt protein
504	 61.82	0	580661..583756	-	1031	187926462	-	Rpic_4283	-	heavy metal efflux pump, CzcA family
505	 65.10	0	583759..584907	-	382	187926463	-	Rpic_4284	-	efflux transporter, RND family, MFP subunit
506	 63.97	0	584912..586282	-	456	187926464	-	Rpic_4285	-	outer membrane efflux protein
507	 65.17	0	586440..586841	-	133	187926465	-	Rpic_4286	-	transcriptional regulator, MerR family
508	 66.43	0	586943..587365	+	140	187926466	-	Rpic_4287	-	hypothetical protein
509	 69.54	+1	587379..587795	-	138	187926467	-	Rpic_4288	-	transport-associated
510	 63.27	0	587857..588327	-	156	187926468	-	Rpic_4289	-	DoxX family protein
511	 65.09	0	588324..589082	-	252	187926469	-	Rpic_4290	-	hypothetical protein
512	 64.94	0	589069..589935	-	288	187926470	-	Rpic_4291	-	protein of unknown function DUF692
513	 67.79	0	589957..590223	-	88	187926471	-	Rpic_4292	-	putative signal peptide protein
514	 64.76	0	590452..590976	-	174	187926472	-	Rpic_4293	-	hypothetical protein
515	 65.19	0	591097..591366	-	89	187926473	-	Rpic_4294	-	hypothetical protein
516	 64.54	0	591525..592466	-	313	187926474	-	Rpic_4295	-	protein of unknown function DUF6 transmembrane
517	 62.25	0	592562..593014	+	150	187926475	-	Rpic_4296	-	transcriptional regulator, AsnC family
518	 63.52	0	594314..594790	+	158	187926476	-	Rpic_4298	-	transcriptional regulator, AsnC family
519	 63.89	0	594934..596664	+	576	187926477	-	Rpic_4299	-	gamma-glutamyltransferase
520	 65.36	0	596741..597814	-	357	187926478	-	Rpic_4300	-	4-hydroxyphenylpyruvate dioxygenase
521	 67.00	0	597896..599086	-	396	187926479	-	Rpic_4301	-	major facilitator superfamily MFS_1
522	 64.87	0	599091..599924	-	277	187926480	-	Rpic_4302	-	Shikimate dehydrogenase substrate binding domain protein
523	 63.35	0	599944..601329	-	461	187926481	-	Rpic_4303	-	major facilitator superfamily MFS_1
524	 65.36	0	601561..602328	-	255	187926482	-	Rpic_4304	-	transcriptional regulator, IclR family
525	 65.45	0	602459..604345	+	628	187926483	-	Rpic_4305	-	4-hydroxyphenylpyruvate dioxygenase
526	 63.57	0	604467..605531	+	354	187926484	-	Rpic_4306	-	porin Gram-negative type
527	 64.43	0	605599..606852	-	417	187926485	-	Rpic_4307	-	D-amino-acid dehydrogenase
528	 68.94	+1	607168..607959	-	263	187926486	-	Rpic_4308	-	Ethanolamine ammonia-lyase
529	 64.06	0	607980..609362	-	460	187926487	-	Rpic_4309	-	Ethanolamine ammonia lyase large subunit
530	 65.61	0	609487..610722	+	411	187926488	-	Rpic_4310	-	chromate transporter, chromate ion transporter (CHR) family
531	 64.88	0	610773..612170	-	465	187926489	-	Rpic_4311	-	DEAD/DEAH box helicase domain protein
532	 56.70	-2	612185..612505	-	106	187926490	-	Rpic_4312	-	hypothetical protein
533	 64.67	0	612968..614716	+	582	187926491	-	Rpic_4313	-	Poly-beta-hydroxybutyrate polymerase domain protein
534	 63.55	0	614881..615393	+	170	187926492	-	Rpic_4315	-	hypothetical protein
535	 65.70	0	615403..616848	+	481	187926493	-	Rpic_4316	-	Phosphate butyryltransferase
536	 63.03	0	616845..618026	+	393	187926494	-	Rpic_4317	-	acetate kinase
537	 65.13	0	618456..619955	+	499	187926495	-	Rpic_4318	-	succinic semialdehyde dehydrogenase
538	 66.75	0	619991..621160	+	389	187926496	-	Rpic_4319	-	iron-containing alcohol dehydrogenase
539	 62.16	0	621357..622820	+	487	187926497	-	Rpic_4320	-	flavin-containing monooxygenase FMO
540	 66.16	0	622834..623811	+	325	187926498	-	Rpic_4321	-	Alpha/beta hydrolase fold-3 domain protein
541	 61.11	-1	624474..624887	+	137	187926499	-	Rpic_4322	-	Endoribonuclease L-PSP
542	 59.71	-1	624947..626311	+	454	187926500	-	Rpic_4323	-	protein of unknown function DUF1329
543	 61.06	-1	626386..628221	+	611	187926501	-	Rpic_4324	-	protein of unknown function DUF1302
544	 62.69	0	628285..630645	+	786	187926502	-	Rpic_4325	-	transporter, putative
545	 64.20	0	630659..631630	+	323	187926503	-	Rpic_4326	-	glycosyl hydrolase, BNR repeat
546	 61.01	-1	631717..632547	+	276	187926504	-	Rpic_4327	-	Phytanoyl-CoA dioxygenase
547	 59.27	-1	632726..634159	-	477	187926505	-	Rpic_4328	-	transcriptional regulator, TetR family
548	 62.41	0	634876..636237	+	453	187926506	-	Rpic_4329	-	FAD dependent oxidoreductase
549	 60.64	-1	636324..637202	+	292	187926507	-	Rpic_4330	-	Phytanoyl-CoA dioxygenase
550	 64.46	0	637396..638892	+	498	187926508	-	Rpic_4331	-	Amine oxidase (flavin-containing)
551	 58.80	-1	638892..639158	+	88	187926509	-	Rpic_4332	-	hypothetical protein
552	 62.10	0	639276..642275	+	999	187926510	-	Rpic_4333	-	transposase Tn3 family protein
553	 62.20	0	642268..642603	+	111	187926511	-	Rpic_4334	-	TnpC
554	 67.92	0	642769..643962	-	397	187926512	-	Rpic_4335	-	integrase family protein
555	 62.93	0	643997..644638	-	213	187926513	-	Rpic_4336	-	hypothetical protein
556	 63.77	0	644653..644928	-	91	187926514	-	Rpic_4337	-	plasmid stabilization system
557	 69.70	+1	644928..645191	-	87	187926515	-	Rpic_4338	-	transcriptional regulator, CopG family
558	 66.67	0	645243..645974	-	243	187926516	-	Rpic_4339	-	hypothetical protein
559	 66.67	0	646188..647225	+	345	187926517	-	Rpic_4340	-	hypothetical protein
560	 55.78	-2	647610..647912	-	100	187926518	-	Rpic_4341	-	hypothetical protein
561	 58.17	-1	648051..648356	+	101	187926519	-	Rpic_4342	-	hypothetical protein
562	 58.19	-1	648416..648592	+	58	187926520	-	Rpic_4343	-	hypothetical protein
563	 58.17	-1	648610..648915	+	101	187926521	-	Rpic_4344	-	hypothetical protein
564	 54.88	-2	648984..649229	+	81	187926522	-	Rpic_4345	-	hypothetical protein
565	 62.38	0	649234..649443	+	69	187926523	-	Rpic_4346	-	hypothetical protein
566	 59.27	-1	649516..651111	+	531	187926524	-	Rpic_4347	-	hypothetical protein
567	 58.18	-1	651127..651456	+	109	187926525	-	Rpic_4348	-	minor coat protein
568	 59.83	-1	651461..652792	+	443	187926526	-	Rpic_4349	-	Zonular occludens toxin
569	 60.20	-1	653239..654120	+	293	187926527	-	Rpic_4350	-	hypothetical protein
570	 61.55	0	654356..655039	-	227	187926528	-	Rpic_4351	-	hypothetical protein
571	 60.51	-1	655017..657194	-	725	187926529	-	Rpic_4352	-	type I phosphodiesterase/nucleotide pyrophosphatase
572	 60.14	-1	657655..658620	+	321	187926530	-	Rpic_4353	-	transcriptional regulator, MerR family
573	 59.89	-1	658733..659485	+	250	187926531	-	Rpic_4354	-	short-chain dehydrogenase/reductase SDR
574	 60.53	-1	659482..659937	+	151	187926532	-	Rpic_4355	-	hypothetical protein
575	 55.14	-2	659967..660443	+	158	187926533	-	Rpic_4356	-	succinate dehydrogenase, cytochrome b556 subunit
576	 58.74	-1	660454..660819	+	121	187926534	-	Rpic_4357	-	succinate dehydrogenase, hydrophobic membrane anchor protein
577	 64.36	0	660823..662601	+	592	187926535	-	Rpic_4358	-	succinate dehydrogenase, flavoprotein subunit
578	 61.40	0	662624..663325	+	233	187926536	-	Rpic_4359	-	succinate dehydrogenase and fumarate reductase iron-sulfur protein
579	 58.33	-1	663476..664207	-	243	187926537	-	Rpic_4360	-	hypothetical protein
580	 58.29	-1	664204..664836	-	210	187926538	-	Rpic_4361	-	RNA polymerase, sigma-24 subunit, ECF subfamily
581	 58.29	-1	664979..665563	-	194	187926539	-	Rpic_4362	-	beta-Ig-H3/fasciclin
582	 59.97	-1	666070..666651	+	193	187926540	-	Rpic_4363	-	hypothetical protein
583	 63.61	0	666648..667334	+	228	187926541	-	Rpic_4364	-	hypothetical protein
584	 61.78	0	667604..668074	+	156	187926542	-	Rpic_4365	-	hypothetical protein
585	 64.44	0	668002..668181	-	59	187926543	-	Rpic_4366	-	hypothetical protein
586	 61.73	0	668197..669372	-	391	187926544	-	Rpic_4367	-	efflux transporter, RND family, MFP subunit
587	 59.54	-1	669369..671738	-	789	187926545	-	Rpic_4368	-	protein of unknown function DUF214
588	 61.28	0	671732..672436	-	234	187926546	-	Rpic_4369	-	ABC transporter related
589	 58.08	-1	672451..672741	-	96	187926547	-	Rpic_4370	-	hypothetical protein
590	 59.22	-1	672975..673619	-	214	187926548	-	Rpic_4371	-	putative transmembrane protein
591	 63.44	0	673625..675916	-	763	187926549	-	Rpic_4372	-	heavy metal translocating P-type ATPase
592	 62.29	0	675952..676476	-	174	187926550	-	Rpic_4373	-	cytochrome B561
593	 67.30	0	676522..677778	-	418	187926551	-	Rpic_4374	-	hypothetical protein
594	 65.51	0	677775..680888	-	1037	187926552	-	Rpic_4375	-	heavy metal efflux pump, CzcA family
595	 67.86	0	680888..681973	-	361	187926553	-	Rpic_4376	-	efflux transporter, RND family, MFP subunit
596	 62.85	0	682272..682742	-	156	187926554	-	Rpic_4377	-	hypothetical protein
64.67	MEAN

3.41	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.