version 1.0
Ralstonia pickettii 12J chromosome 2, complete sequence - 1..1302238 1153 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 450 66.67 0 514586..515362 + 258 187926408 - Rpic_4229 - protein of unknown function DUF82 451 63.94 0 515363..516793 - 476 187926409 - Rpic_4230 - alpha,alpha-trehalose-phosphate synthase (UDP-forming) 452 67.79 0 516790..517590 - 266 187926410 - Rpic_4231 - HAD-superfamily hydrolase, subfamily IIB 453 66.33 0 517752..519803 - 683 187926411 - Rpic_4232 - NADH:flavin oxidoreductase/NADH oxidase 454 57.00 -2 519911..520117 - 68 187926412 - Rpic_4233 - hypothetical protein 455 68.50 +1 520204..521184 + 326 187926413 - Rpic_4234 - integrase family protein 456 63.16 0 521352..522377 + 341 187926414 - Rpic_4235 - UDP-glucose 4-epimerase 457 66.67 0 522416..523843 + 475 187926415 - Rpic_4236 - putative PAS/PAC sensor protein 458 62.13 0 524024..525565 + 513 187926416 - Rpic_4237 - methyl-accepting chemotaxis sensory transducer 459 58.58 -1 525686..525994 - 102 187926417 - Rpic_4238 - histone family protein nucleoid-structuring protein H-NS 460 64.32 0 526408..528495 - 695 187926418 - Rpic_4239 - diguanylate cyclase/phosphodiesterase 461 64.19 0 528800..530053 - 417 187926419 - Rpic_4240 - transcriptional regulator, LuxR family 462 63.29 0 530185..531930 - 581 187926420 - Rpic_4241 - Polypeptide-transport-associated domain protein ShlB-type 463 70.12 +1 532137..533612 - 491 187926421 - Rpic_4242 - putative hemagglutinin-related transmembrane protein 464 69.33 +1 534101..535225 + 374 187926422 - Rpic_4243 - putative hemagglutinin-related transmembrane protein 465 56.11 -2 535791..535970 + 59 187926423 - Rpic_4244 - Flp/Fap pilin component 466 61.05 -1 535980..536531 + 183 187926424 - Rpic_4245 - peptidase A24A prepilin type IV 467 67.26 0 536596..537099 + 167 187926425 - Rpic_4246 - TadE family protein 468 66.34 0 537152..538075 + 307 187926426 - Rpic_4247 - Flp pilus assembly protein CpaB 469 62.93 0 538068..539432 + 454 187926427 - Rpic_4248 - type II and III secretion system protein 470 64.73 0 539442..540785 + 447 187926428 - Rpic_4249 - putative pilus assembly protein 471 64.16 0 540782..542137 + 451 187926429 - Rpic_4250 - type II secretion system protein E 472 64.08 0 542130..543056 + 308 187926430 - Rpic_4251 - type II secretion system protein 473 65.76 0 543066..544055 + 329 187926431 - Rpic_4252 - type II secretion system protein 474 66.88 0 544057..544980 + 307 187926432 - Rpic_4253 - Tetratricopeptide TPR_2 repeat protein 475 63.64 0 544977..545306 + 109 187926433 - Rpic_4254 - putative signal peptide protein 476 60.52 -1 545398..547056 + 552 187926434 - Rpic_4255 - putative transmembrane protein 477 64.62 0 547072..548487 + 471 187926435 - Rpic_4256 - sigma54 specific transcriptional regulator, Fis family 478 65.39 0 548594..549376 + 260 187926436 - Rpic_4257 - putative lipoprotein 479 67.56 0 549527..552766 + 1079 187926437 - Rpic_4258 - cytochrome P450 480 60.48 -1 552935..553225 + 96 187926438 - Rpic_4259 - putative transmembrane protein 481 64.33 0 553278..554432 - 384 187926439 - Rpic_4260 - oxidoreductase domain protein 482 66.38 0 554585..554929 - 114 187926440 - Rpic_4261 - Antibiotic biosynthesis monooxygenase 483 71.23 +1 554978..556117 - 379 187926441 - Rpic_4262 - cytochrome P450-like protein 484 68.34 +1 556206..556922 + 238 187926442 - Rpic_4263 - transcriptional regulator, ArsR family 485 58.56 -1 556939..557481 - 180 187926443 - Rpic_4264 - GCN5-related N-acetyltransferase 486 66.05 0 557537..558679 - 380 187926444 - Rpic_4265 - PepSY-associated TM helix domain protein 487 64.40 0 558710..560830 - 706 187926445 - Rpic_4266 - TonB-dependent siderophore receptor 488 68.34 +1 561096..562172 + 358 187926446 - Rpic_4267 - oxidoreductase domain protein 489 67.19 0 562169..564280 + 703 187926447 - Rpic_4268 - sodium/hydrogen exchanger 490 64.13 0 564308..565570 - 420 187926448 - Rpic_4269 - Patatin 491 62.60 0 565602..566387 - 261 187926449 - Rpic_4270 - 3-hydroxybutyrate dehydrogenase 492 64.38 0 566441..567184 - 247 187926450 - Rpic_4271 - Acetoacetate decarboxylase 493 67.66 0 567377..568780 - 467 187926451 - Rpic_4272 - transcriptional regulator, GntR family with aminotransferase domain 494 67.41 0 568936..570273 + 445 187926452 - Rpic_4273 - aminotransferase class-III 495 64.30 0 570275..571798 + 507 187926453 - Rpic_4274 - methylmalonate-semialdehyde dehydrogenase 496 55.56 -2 571875..572081 - 68 187926454 - Rpic_4275 - putative cold-shock DNA-binding domain protein 497 53.43 -2 572259..572462 - 67 187926455 - Rpic_4276 - cold-shock DNA-binding domain protein 498 62.08 0 572814..574709 + 631 187926456 - Rpic_4277 - K potassium transporter 499 65.20 0 574728..575543 - 271 187926457 - Rpic_4278 - formate dehydrogenase family accessory protein FdhD 500 70.73 +1 575540..575785 - 81 187926458 - Rpic_4279 - hypothetical protein 501 65.85 0 575785..578124 - 779 187926459 - Rpic_4280 - oxidoreductase alpha (molybdopterin) subunit 502 64.41 0 578153..579880 - 575 187926460 - Rpic_4281 - major facilitator superfamily MFS_1 503 63.12 0 580089..580568 - 159 187926461 - Rpic_4282 - Hpt protein 504 61.82 0 580661..583756 - 1031 187926462 - Rpic_4283 - heavy metal efflux pump, CzcA family 505 65.10 0 583759..584907 - 382 187926463 - Rpic_4284 - efflux transporter, RND family, MFP subunit 506 63.97 0 584912..586282 - 456 187926464 - Rpic_4285 - outer membrane efflux protein 507 65.17 0 586440..586841 - 133 187926465 - Rpic_4286 - transcriptional regulator, MerR family 508 66.43 0 586943..587365 + 140 187926466 - Rpic_4287 - hypothetical protein 509 69.54 +1 587379..587795 - 138 187926467 - Rpic_4288 - transport-associated 510 63.27 0 587857..588327 - 156 187926468 - Rpic_4289 - DoxX family protein 511 65.09 0 588324..589082 - 252 187926469 - Rpic_4290 - hypothetical protein 512 64.94 0 589069..589935 - 288 187926470 - Rpic_4291 - protein of unknown function DUF692 513 67.79 0 589957..590223 - 88 187926471 - Rpic_4292 - putative signal peptide protein 514 64.76 0 590452..590976 - 174 187926472 - Rpic_4293 - hypothetical protein 515 65.19 0 591097..591366 - 89 187926473 - Rpic_4294 - hypothetical protein 516 64.54 0 591525..592466 - 313 187926474 - Rpic_4295 - protein of unknown function DUF6 transmembrane 517 62.25 0 592562..593014 + 150 187926475 - Rpic_4296 - transcriptional regulator, AsnC family 518 63.52 0 594314..594790 + 158 187926476 - Rpic_4298 - transcriptional regulator, AsnC family 519 63.89 0 594934..596664 + 576 187926477 - Rpic_4299 - gamma-glutamyltransferase 520 65.36 0 596741..597814 - 357 187926478 - Rpic_4300 - 4-hydroxyphenylpyruvate dioxygenase 521 67.00 0 597896..599086 - 396 187926479 - Rpic_4301 - major facilitator superfamily MFS_1 522 64.87 0 599091..599924 - 277 187926480 - Rpic_4302 - Shikimate dehydrogenase substrate binding domain protein 523 63.35 0 599944..601329 - 461 187926481 - Rpic_4303 - major facilitator superfamily MFS_1 524 65.36 0 601561..602328 - 255 187926482 - Rpic_4304 - transcriptional regulator, IclR family 525 65.45 0 602459..604345 + 628 187926483 - Rpic_4305 - 4-hydroxyphenylpyruvate dioxygenase 526 63.57 0 604467..605531 + 354 187926484 - Rpic_4306 - porin Gram-negative type 527 64.43 0 605599..606852 - 417 187926485 - Rpic_4307 - D-amino-acid dehydrogenase 528 68.94 +1 607168..607959 - 263 187926486 - Rpic_4308 - Ethanolamine ammonia-lyase 529 64.06 0 607980..609362 - 460 187926487 - Rpic_4309 - Ethanolamine ammonia lyase large subunit 530 65.61 0 609487..610722 + 411 187926488 - Rpic_4310 - chromate transporter, chromate ion transporter (CHR) family 531 64.88 0 610773..612170 - 465 187926489 - Rpic_4311 - DEAD/DEAH box helicase domain protein 532 56.70 -2 612185..612505 - 106 187926490 - Rpic_4312 - hypothetical protein 533 64.67 0 612968..614716 + 582 187926491 - Rpic_4313 - Poly-beta-hydroxybutyrate polymerase domain protein 534 63.55 0 614881..615393 + 170 187926492 - Rpic_4315 - hypothetical protein 535 65.70 0 615403..616848 + 481 187926493 - Rpic_4316 - Phosphate butyryltransferase 536 63.03 0 616845..618026 + 393 187926494 - Rpic_4317 - acetate kinase 537 65.13 0 618456..619955 + 499 187926495 - Rpic_4318 - succinic semialdehyde dehydrogenase 538 66.75 0 619991..621160 + 389 187926496 - Rpic_4319 - iron-containing alcohol dehydrogenase 539 62.16 0 621357..622820 + 487 187926497 - Rpic_4320 - flavin-containing monooxygenase FMO 540 66.16 0 622834..623811 + 325 187926498 - Rpic_4321 - Alpha/beta hydrolase fold-3 domain protein 541 61.11 -1 624474..624887 + 137 187926499 - Rpic_4322 - Endoribonuclease L-PSP 542 59.71 -1 624947..626311 + 454 187926500 - Rpic_4323 - protein of unknown function DUF1329 543 61.06 -1 626386..628221 + 611 187926501 - Rpic_4324 - protein of unknown function DUF1302 544 62.69 0 628285..630645 + 786 187926502 - Rpic_4325 - transporter, putative 545 64.20 0 630659..631630 + 323 187926503 - Rpic_4326 - glycosyl hydrolase, BNR repeat 546 61.01 -1 631717..632547 + 276 187926504 - Rpic_4327 - Phytanoyl-CoA dioxygenase 547 59.27 -1 632726..634159 - 477 187926505 - Rpic_4328 - transcriptional regulator, TetR family 548 62.41 0 634876..636237 + 453 187926506 - Rpic_4329 - FAD dependent oxidoreductase 549 60.64 -1 636324..637202 + 292 187926507 - Rpic_4330 - Phytanoyl-CoA dioxygenase 64.67 MEAN 3.41 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0