version 1.0
Ralstonia pickettii 12J chromosome 2, complete sequence - 1..1302238 1153 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 413 66.99 0 470183..470809 - 208 187926371 - Rpic_4192 - 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase 414 64.08 0 470844..472196 - 450 187926372 - Rpic_4193 - gluconate transporter 415 64.08 0 472277..472663 - 128 187926373 - Rpic_4194 - Endoribonuclease L-PSP 416 67.27 0 472705..474189 - 494 187926374 - Rpic_4195 - N-acyl-D-amino-acid deacylase 417 66.67 0 474191..475084 - 297 187926375 - Rpic_4196 - transcriptional regulator, RpiR family 418 63.77 0 475223..476500 + 425 187926376 - Rpic_4197 - putative D-serine deaminase (D-serine dehydratase) protein 419 65.70 0 476513..477439 + 308 187926377 - Rpic_4198 - PfkB domain protein 420 65.35 0 477767..480196 - 809 187926378 - Rpic_4199 - peptidase S45 penicillin amidase 421 67.45 0 480464..482500 - 678 187926379 - Rpic_4200 - multi-sensor hybrid histidine kinase 422 68.75 +1 482652..483950 - 432 187926380 - Rpic_4201 - major facilitator superfamily MFS_1 423 65.27 0 484103..484459 + 118 187926381 - Rpic_4202 - hypothetical protein 424 62.72 0 484478..484756 - 92 187926382 - Rpic_4203 - hypothetical protein 425 58.63 -1 485110..485358 + 82 187926383 - Rpic_4204 - protein of unknown function DUF1458 426 63.89 0 485424..487586 - 720 187926384 - Rpic_4205 - acid phosphatase 427 66.67 0 487861..489252 + 463 187926385 - Rpic_4206 - Di-haem cytochrome c peroxidase 428 65.28 0 489376..490956 + 526 187926386 - Rpic_4207 - Integral membrane protein TerC 429 67.32 0 490953..491870 - 305 187926387 - Rpic_4208 - protein of unknown function DUF6 transmembrane 430 68.12 +1 491963..492790 - 275 187926388 - Rpic_4209 - transcriptional regulator, AraC family 431 67.37 0 493003..494559 + 518 187926389 - Rpic_4210 - integral membrane sensor signal transduction histidine kinase 432 65.61 0 494543..495202 + 219 187926390 - Rpic_4211 - two component transcriptional regulator, winged helix family 433 68.59 +1 495308..495880 + 190 187926391 - Rpic_4212 - putative lipoprotein signal peptide 434 62.59 0 495942..496382 - 146 187926392 - Rpic_4213 - UspA domain protein 435 67.76 0 496537..497454 - 305 187926393 - Rpic_4214 - transcriptional regulator, AraC family 436 67.59 0 497507..497938 - 143 187926394 - Rpic_4215 - putative signal peptide protein 437 67.77 0 497935..498297 - 120 187926395 - Rpic_4216 - putative glycoprotein 438 65.83 0 499011..501761 + 916 187926396 - Rpic_4217 - diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) 439 66.07 0 501885..502388 + 167 187926397 - Rpic_4218 - putative transmembrane protein 440 68.88 +1 502447..503259 + 270 187926398 - Rpic_4219 - transcriptional regulator, ModE family 441 66.67 0 503267..503764 + 165 187926399 - Rpic_4220 - flavodoxin/nitric oxide synthase 442 66.80 0 503767..504510 - 247 187926400 - Rpic_4221 - ABC transporter related 443 67.98 0 504507..505193 - 228 187926401 - Rpic_4222 - molybdate ABC transporter, inner membrane subunit 444 70.91 +1 505450..506982 - 510 187926402 - Rpic_4223 - RND efflux system, outer membrane lipoprotein, NodT family 445 64.17 0 507044..510250 - 1068 187926403 - Rpic_4224 - transporter, hydrophobe/amphiphile efflux-1 (HAE1) family 446 68.27 +1 510280..511590 - 436 187926404 - Rpic_4225 - efflux transporter, RND family, MFP subunit 447 68.13 +1 511706..512797 - 363 187926405 - Rpic_4226 - Alpha/beta hydrolase fold-3 domain protein 448 62.22 0 513138..514082 + 314 187926406 - Rpic_4227 - transcriptional regulator, LysR family 449 65.89 0 514180..514437 + 85 187926407 - Rpic_4228 - hypothetical protein 450 66.67 0 514586..515362 + 258 187926408 - Rpic_4229 - protein of unknown function DUF82 451 63.94 0 515363..516793 - 476 187926409 - Rpic_4230 - alpha,alpha-trehalose-phosphate synthase (UDP-forming) 452 67.79 0 516790..517590 - 266 187926410 - Rpic_4231 - HAD-superfamily hydrolase, subfamily IIB 453 66.33 0 517752..519803 - 683 187926411 - Rpic_4232 - NADH:flavin oxidoreductase/NADH oxidase 454 57.00 -2 519911..520117 - 68 187926412 - Rpic_4233 - hypothetical protein 455 68.50 +1 520204..521184 + 326 187926413 - Rpic_4234 - integrase family protein 456 63.16 0 521352..522377 + 341 187926414 - Rpic_4235 - UDP-glucose 4-epimerase 457 66.67 0 522416..523843 + 475 187926415 - Rpic_4236 - putative PAS/PAC sensor protein 458 62.13 0 524024..525565 + 513 187926416 - Rpic_4237 - methyl-accepting chemotaxis sensory transducer 459 58.58 -1 525686..525994 - 102 187926417 - Rpic_4238 - histone family protein nucleoid-structuring protein H-NS 460 64.32 0 526408..528495 - 695 187926418 - Rpic_4239 - diguanylate cyclase/phosphodiesterase 461 64.19 0 528800..530053 - 417 187926419 - Rpic_4240 - transcriptional regulator, LuxR family 462 63.29 0 530185..531930 - 581 187926420 - Rpic_4241 - Polypeptide-transport-associated domain protein ShlB-type 463 70.12 +1 532137..533612 - 491 187926421 - Rpic_4242 - putative hemagglutinin-related transmembrane protein 464 69.33 +1 534101..535225 + 374 187926422 - Rpic_4243 - putative hemagglutinin-related transmembrane protein 465 56.11 -2 535791..535970 + 59 187926423 - Rpic_4244 - Flp/Fap pilin component 466 61.05 -1 535980..536531 + 183 187926424 - Rpic_4245 - peptidase A24A prepilin type IV 467 67.26 0 536596..537099 + 167 187926425 - Rpic_4246 - TadE family protein 468 66.34 0 537152..538075 + 307 187926426 - Rpic_4247 - Flp pilus assembly protein CpaB 469 62.93 0 538068..539432 + 454 187926427 - Rpic_4248 - type II and III secretion system protein 470 64.73 0 539442..540785 + 447 187926428 - Rpic_4249 - putative pilus assembly protein 471 64.16 0 540782..542137 + 451 187926429 - Rpic_4250 - type II secretion system protein E 472 64.08 0 542130..543056 + 308 187926430 - Rpic_4251 - type II secretion system protein 473 65.76 0 543066..544055 + 329 187926431 - Rpic_4252 - type II secretion system protein 474 66.88 0 544057..544980 + 307 187926432 - Rpic_4253 - Tetratricopeptide TPR_2 repeat protein 475 63.64 0 544977..545306 + 109 187926433 - Rpic_4254 - putative signal peptide protein 476 60.52 -1 545398..547056 + 552 187926434 - Rpic_4255 - putative transmembrane protein 477 64.62 0 547072..548487 + 471 187926435 - Rpic_4256 - sigma54 specific transcriptional regulator, Fis family 478 65.39 0 548594..549376 + 260 187926436 - Rpic_4257 - putative lipoprotein 479 67.56 0 549527..552766 + 1079 187926437 - Rpic_4258 - cytochrome P450 480 60.48 -1 552935..553225 + 96 187926438 - Rpic_4259 - putative transmembrane protein 481 64.33 0 553278..554432 - 384 187926439 - Rpic_4260 - oxidoreductase domain protein 482 66.38 0 554585..554929 - 114 187926440 - Rpic_4261 - Antibiotic biosynthesis monooxygenase 483 71.23 +1 554978..556117 - 379 187926441 - Rpic_4262 - cytochrome P450-like protein 484 68.34 +1 556206..556922 + 238 187926442 - Rpic_4263 - transcriptional regulator, ArsR family 485 58.56 -1 556939..557481 - 180 187926443 - Rpic_4264 - GCN5-related N-acetyltransferase 486 66.05 0 557537..558679 - 380 187926444 - Rpic_4265 - PepSY-associated TM helix domain protein 487 64.40 0 558710..560830 - 706 187926445 - Rpic_4266 - TonB-dependent siderophore receptor 488 68.34 +1 561096..562172 + 358 187926446 - Rpic_4267 - oxidoreductase domain protein 489 67.19 0 562169..564280 + 703 187926447 - Rpic_4268 - sodium/hydrogen exchanger 490 64.13 0 564308..565570 - 420 187926448 - Rpic_4269 - Patatin 491 62.60 0 565602..566387 - 261 187926449 - Rpic_4270 - 3-hydroxybutyrate dehydrogenase 492 64.38 0 566441..567184 - 247 187926450 - Rpic_4271 - Acetoacetate decarboxylase 493 67.66 0 567377..568780 - 467 187926451 - Rpic_4272 - transcriptional regulator, GntR family with aminotransferase domain 494 67.41 0 568936..570273 + 445 187926452 - Rpic_4273 - aminotransferase class-III 495 64.30 0 570275..571798 + 507 187926453 - Rpic_4274 - methylmalonate-semialdehyde dehydrogenase 496 55.56 -2 571875..572081 - 68 187926454 - Rpic_4275 - putative cold-shock DNA-binding domain protein 497 53.43 -2 572259..572462 - 67 187926455 - Rpic_4276 - cold-shock DNA-binding domain protein 498 62.08 0 572814..574709 + 631 187926456 - Rpic_4277 - K potassium transporter 499 65.20 0 574728..575543 - 271 187926457 - Rpic_4278 - formate dehydrogenase family accessory protein FdhD 500 70.73 +1 575540..575785 - 81 187926458 - Rpic_4279 - hypothetical protein 501 65.85 0 575785..578124 - 779 187926459 - Rpic_4280 - oxidoreductase alpha (molybdopterin) subunit 502 64.41 0 578153..579880 - 575 187926460 - Rpic_4281 - major facilitator superfamily MFS_1 503 63.12 0 580089..580568 - 159 187926461 - Rpic_4282 - Hpt protein 504 61.82 0 580661..583756 - 1031 187926462 - Rpic_4283 - heavy metal efflux pump, CzcA family 505 65.10 0 583759..584907 - 382 187926463 - Rpic_4284 - efflux transporter, RND family, MFP subunit 506 63.97 0 584912..586282 - 456 187926464 - Rpic_4285 - outer membrane efflux protein 507 65.17 0 586440..586841 - 133 187926465 - Rpic_4286 - transcriptional regulator, MerR family 508 66.43 0 586943..587365 + 140 187926466 - Rpic_4287 - hypothetical protein 509 69.54 +1 587379..587795 - 138 187926467 - Rpic_4288 - transport-associated 510 63.27 0 587857..588327 - 156 187926468 - Rpic_4289 - DoxX family protein 511 65.09 0 588324..589082 - 252 187926469 - Rpic_4290 - hypothetical protein 512 64.94 0 589069..589935 - 288 187926470 - Rpic_4291 - protein of unknown function DUF692 64.67 MEAN 3.41 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0