IslandPathversion 1.0

IslandPath Analysis: Ralstonia pickettii 12J



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 64.67 STD DEV: 3.41
Ralstonia pickettii 12J chromosome 2, complete sequence - 1..1302238
1153 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
390	 67.03	0	435846..438593	+	915	187926348	-	Rpic_4167	-	Nitrate reductase
391	 69.43	+1	438704..439318	+	204	187926349	-	Rpic_4168	-	hypothetical protein
392	 65.28	0	439315..440682	+	455	187926350	-	Rpic_4169	-	MATE efflux family protein
393	 68.96	+1	440739..442001	-	420	187926351	-	Rpic_4170	-	major facilitator superfamily MFS_1
394	 64.50	0	442094..443527	-	477	187926352	-	Rpic_4171	-	phospholipase D/Transphosphatidylase
395	 65.66	0	443713..445407	+	564	187926353	-	Rpic_4172	-	phospholipase D/Transphosphatidylase
396	 59.57	-1	445484..445624	-	46	187926354	-	Rpic_4173	-	Entericidin EcnAB
397	 64.56	0	445916..447484	+	522	187926355	-	Rpic_4174	-	methyl-accepting chemotaxis sensory transducer
398	 66.67	0	447541..448956	-	471	187926356	-	Rpic_4175	-	diguanylate cyclase/phosphodiesterase
399	 65.01	0	449181..450086	-	301	187926357	-	Rpic_4176	-	type IV pilus assembly PilZ
400	 64.33	0	450206..450718	+	170	187926358	-	Rpic_4177	-	GtrA family protein
401	 66.87	0	450735..451217	-	160	187926359	-	Rpic_4178	-	hypothetical protein
402	 66.14	0	451870..453210	+	446	187926360	-	Rpic_4179	-	diguanylate cyclase with PAS/PAC sensor
403	 61.70	0	453289..453852	-	187	187926361	-	Rpic_4180	-	putative signal peptide protein
404	 66.60	0	454153..455658	-	501	187926362	-	Rpic_4181	-	RND efflux system, outer membrane lipoprotein, NodT family
405	 64.22	0	455661..458762	-	1033	187926363	-	Rpic_4182	-	acriflavin resistance protein
406	 64.43	0	458759..461893	-	1044	187926364	-	Rpic_4183	-	acriflavin resistance protein
407	 67.03	0	461951..463339	-	462	187926365	-	Rpic_4184	-	efflux transporter, RND family, MFP subunit
408	 67.08	0	463593..464324	+	243	187926366	-	Rpic_4185	-	two component transcriptional regulator, winged helix family
409	 66.43	0	464308..465594	+	428	187926367	-	Rpic_4186	-	integral membrane sensor signal transduction histidine kinase
410	 71.69	+2	465701..466138	+	145	187926368	-	Rpic_4187	-	protein of unknown function DUF333
411	 59.98	-1	467180..467986	+	268	187926369	-	Rpic_4189	-	transposase IS4 family protein
412	 65.01	0	469423..470148	+	241	187926370	-	Rpic_4191	-	3,4-dihydroxy-2-butanone 4-phosphate synthase
413	 66.99	0	470183..470809	-	208	187926371	-	Rpic_4192	-	2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase
414	 64.08	0	470844..472196	-	450	187926372	-	Rpic_4193	-	gluconate transporter
415	 64.08	0	472277..472663	-	128	187926373	-	Rpic_4194	-	Endoribonuclease L-PSP
416	 67.27	0	472705..474189	-	494	187926374	-	Rpic_4195	-	N-acyl-D-amino-acid deacylase
417	 66.67	0	474191..475084	-	297	187926375	-	Rpic_4196	-	transcriptional regulator, RpiR family
418	 63.77	0	475223..476500	+	425	187926376	-	Rpic_4197	-	putative D-serine deaminase (D-serine dehydratase) protein
419	 65.70	0	476513..477439	+	308	187926377	-	Rpic_4198	-	PfkB domain protein
420	 65.35	0	477767..480196	-	809	187926378	-	Rpic_4199	-	peptidase S45 penicillin amidase
421	 67.45	0	480464..482500	-	678	187926379	-	Rpic_4200	-	multi-sensor hybrid histidine kinase
422	 68.75	+1	482652..483950	-	432	187926380	-	Rpic_4201	-	major facilitator superfamily MFS_1
423	 65.27	0	484103..484459	+	118	187926381	-	Rpic_4202	-	hypothetical protein
424	 62.72	0	484478..484756	-	92	187926382	-	Rpic_4203	-	hypothetical protein
425	 58.63	-1	485110..485358	+	82	187926383	-	Rpic_4204	-	protein of unknown function DUF1458
426	 63.89	0	485424..487586	-	720	187926384	-	Rpic_4205	-	acid phosphatase
427	 66.67	0	487861..489252	+	463	187926385	-	Rpic_4206	-	Di-haem cytochrome c peroxidase
428	 65.28	0	489376..490956	+	526	187926386	-	Rpic_4207	-	Integral membrane protein TerC
429	 67.32	0	490953..491870	-	305	187926387	-	Rpic_4208	-	protein of unknown function DUF6 transmembrane
430	 68.12	+1	491963..492790	-	275	187926388	-	Rpic_4209	-	transcriptional regulator, AraC family
431	 67.37	0	493003..494559	+	518	187926389	-	Rpic_4210	-	integral membrane sensor signal transduction histidine kinase
432	 65.61	0	494543..495202	+	219	187926390	-	Rpic_4211	-	two component transcriptional regulator, winged helix family
433	 68.59	+1	495308..495880	+	190	187926391	-	Rpic_4212	-	putative lipoprotein signal peptide
434	 62.59	0	495942..496382	-	146	187926392	-	Rpic_4213	-	UspA domain protein
435	 67.76	0	496537..497454	-	305	187926393	-	Rpic_4214	-	transcriptional regulator, AraC family
436	 67.59	0	497507..497938	-	143	187926394	-	Rpic_4215	-	putative signal peptide protein
437	 67.77	0	497935..498297	-	120	187926395	-	Rpic_4216	-	putative glycoprotein
438	 65.83	0	499011..501761	+	916	187926396	-	Rpic_4217	-	diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
439	 66.07	0	501885..502388	+	167	187926397	-	Rpic_4218	-	putative transmembrane protein
440	 68.88	+1	502447..503259	+	270	187926398	-	Rpic_4219	-	transcriptional regulator, ModE family
441	 66.67	0	503267..503764	+	165	187926399	-	Rpic_4220	-	flavodoxin/nitric oxide synthase
442	 66.80	0	503767..504510	-	247	187926400	-	Rpic_4221	-	ABC transporter related
443	 67.98	0	504507..505193	-	228	187926401	-	Rpic_4222	-	molybdate ABC transporter, inner membrane subunit
444	 70.91	+1	505450..506982	-	510	187926402	-	Rpic_4223	-	RND efflux system, outer membrane lipoprotein, NodT family
445	 64.17	0	507044..510250	-	1068	187926403	-	Rpic_4224	-	transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
446	 68.27	+1	510280..511590	-	436	187926404	-	Rpic_4225	-	efflux transporter, RND family, MFP subunit
447	 68.13	+1	511706..512797	-	363	187926405	-	Rpic_4226	-	Alpha/beta hydrolase fold-3 domain protein
448	 62.22	0	513138..514082	+	314	187926406	-	Rpic_4227	-	transcriptional regulator, LysR family
449	 65.89	0	514180..514437	+	85	187926407	-	Rpic_4228	-	hypothetical protein
450	 66.67	0	514586..515362	+	258	187926408	-	Rpic_4229	-	protein of unknown function DUF82
451	 63.94	0	515363..516793	-	476	187926409	-	Rpic_4230	-	alpha,alpha-trehalose-phosphate synthase (UDP-forming)
452	 67.79	0	516790..517590	-	266	187926410	-	Rpic_4231	-	HAD-superfamily hydrolase, subfamily IIB
453	 66.33	0	517752..519803	-	683	187926411	-	Rpic_4232	-	NADH:flavin oxidoreductase/NADH oxidase
454	 57.00	-2	519911..520117	-	68	187926412	-	Rpic_4233	-	hypothetical protein
455	 68.50	+1	520204..521184	+	326	187926413	-	Rpic_4234	-	integrase family protein
456	 63.16	0	521352..522377	+	341	187926414	-	Rpic_4235	-	UDP-glucose 4-epimerase
457	 66.67	0	522416..523843	+	475	187926415	-	Rpic_4236	-	putative PAS/PAC sensor protein
458	 62.13	0	524024..525565	+	513	187926416	-	Rpic_4237	-	methyl-accepting chemotaxis sensory transducer
459	 58.58	-1	525686..525994	-	102	187926417	-	Rpic_4238	-	histone family protein nucleoid-structuring protein H-NS
460	 64.32	0	526408..528495	-	695	187926418	-	Rpic_4239	-	diguanylate cyclase/phosphodiesterase
461	 64.19	0	528800..530053	-	417	187926419	-	Rpic_4240	-	transcriptional regulator, LuxR family
462	 63.29	0	530185..531930	-	581	187926420	-	Rpic_4241	-	Polypeptide-transport-associated domain protein ShlB-type
463	 70.12	+1	532137..533612	-	491	187926421	-	Rpic_4242	-	putative hemagglutinin-related transmembrane protein
464	 69.33	+1	534101..535225	+	374	187926422	-	Rpic_4243	-	putative hemagglutinin-related transmembrane protein
465	 56.11	-2	535791..535970	+	59	187926423	-	Rpic_4244	-	Flp/Fap pilin component
466	 61.05	-1	535980..536531	+	183	187926424	-	Rpic_4245	-	peptidase A24A prepilin type IV
467	 67.26	0	536596..537099	+	167	187926425	-	Rpic_4246	-	TadE family protein
468	 66.34	0	537152..538075	+	307	187926426	-	Rpic_4247	-	Flp pilus assembly protein CpaB
469	 62.93	0	538068..539432	+	454	187926427	-	Rpic_4248	-	type II and III secretion system protein
470	 64.73	0	539442..540785	+	447	187926428	-	Rpic_4249	-	putative pilus assembly protein
471	 64.16	0	540782..542137	+	451	187926429	-	Rpic_4250	-	type II secretion system protein E
472	 64.08	0	542130..543056	+	308	187926430	-	Rpic_4251	-	type II secretion system protein
473	 65.76	0	543066..544055	+	329	187926431	-	Rpic_4252	-	type II secretion system protein
474	 66.88	0	544057..544980	+	307	187926432	-	Rpic_4253	-	Tetratricopeptide TPR_2 repeat protein
475	 63.64	0	544977..545306	+	109	187926433	-	Rpic_4254	-	putative signal peptide protein
476	 60.52	-1	545398..547056	+	552	187926434	-	Rpic_4255	-	putative transmembrane protein
477	 64.62	0	547072..548487	+	471	187926435	-	Rpic_4256	-	sigma54 specific transcriptional regulator, Fis family
478	 65.39	0	548594..549376	+	260	187926436	-	Rpic_4257	-	putative lipoprotein
479	 67.56	0	549527..552766	+	1079	187926437	-	Rpic_4258	-	cytochrome P450
480	 60.48	-1	552935..553225	+	96	187926438	-	Rpic_4259	-	putative transmembrane protein
481	 64.33	0	553278..554432	-	384	187926439	-	Rpic_4260	-	oxidoreductase domain protein
482	 66.38	0	554585..554929	-	114	187926440	-	Rpic_4261	-	Antibiotic biosynthesis monooxygenase
483	 71.23	+1	554978..556117	-	379	187926441	-	Rpic_4262	-	cytochrome P450-like protein
484	 68.34	+1	556206..556922	+	238	187926442	-	Rpic_4263	-	transcriptional regulator, ArsR family
485	 58.56	-1	556939..557481	-	180	187926443	-	Rpic_4264	-	GCN5-related N-acetyltransferase
486	 66.05	0	557537..558679	-	380	187926444	-	Rpic_4265	-	PepSY-associated TM helix domain protein
487	 64.40	0	558710..560830	-	706	187926445	-	Rpic_4266	-	TonB-dependent siderophore receptor
488	 68.34	+1	561096..562172	+	358	187926446	-	Rpic_4267	-	oxidoreductase domain protein
489	 67.19	0	562169..564280	+	703	187926447	-	Rpic_4268	-	sodium/hydrogen exchanger
64.67	MEAN

3.41	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.