IslandPathversion 1.0

IslandPath Analysis: Ralstonia pickettii 12J



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 64.67 STD DEV: 3.41
Ralstonia pickettii 12J chromosome 2, complete sequence - 1..1302238
1153 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
348	 66.46	0	393041..394486	+	481	187926306	-	Rpic_4123	-	putative transmembrane protein
349	 64.55	0	394483..394671	+	62	187926307	-	Rpic_4124	-	putative serine-rich transmembrane protein
350	 68.08	+1	394668..395093	+	141	187926308	-	Rpic_4125	-	S-adenosylmethionine decarboxylase proenzyme
351	 63.99	0	395095..396141	-	348	187926309	-	Rpic_4126	-	diguanylate cyclase with GAF sensor
352	 63.71	0	396242..397627	-	461	187926310	-	Rpic_4127	-	fumarate hydratase, class II
353	 65.24	0	397763..399235	+	490	187926311	-	Rpic_4128	-	drug resistance transporter, EmrB/QacA subfamily
354	 66.11	0	399261..401411	-	716	187926312	-	Rpic_4129	-	UvrD/REP helicase
355	 64.78	0	401512..401829	-	105	187926313	-	Rpic_4130	-	hypothetical protein
356	 66.07	0	401976..402308	-	110	187926314	-	Rpic_4131	-	protein of unknown function UPF0060
357	 69.81	+1	402391..402804	-	137	187926315	-	Rpic_4132	-	PfkB domain protein
358	 66.08	0	402932..403954	-	340	187926316	-	Rpic_4133	-	GumN family protein
359	 65.48	0	404038..405219	-	393	187926317	-	Rpic_4134	-	hypothetical protein
360	 67.91	0	405407..405808	+	133	187926318	-	Rpic_4135	-	putative transmembrane protein
361	 64.08	0	405891..408209	+	772	187926319	-	Rpic_4136	-	TonB-dependent receptor
362	 65.48	0	408197..409462	+	421	187926320	-	Rpic_4137	-	glycosyl hydrolase BNR repeat-containing protein
363	 66.86	0	409459..409965	+	168	187926321	-	Rpic_4138	-	putative signal peptide protein
364	 67.38	0	410199..410477	-	92	187926322	-	Rpic_4139	-	hypothetical protein
365	 65.09	0	410495..411253	-	252	187926323	-	Rpic_4140	-	protein of unknown function DUF81
366	 66.44	0	411384..412268	+	294	187926324	-	Rpic_4141	-	transcriptional regulator, LysR family
367	 67.62	0	412413..412934	+	173	187926325	-	Rpic_4142	-	putative transmembrane protein
368	 65.49	0	413084..414781	+	565	187926326	-	Rpic_4143	-	AMP-dependent synthetase and ligase
369	 61.99	0	414858..415199	-	113	187926327	-	Rpic_4144	-	hypothetical protein
370	 58.71	-1	415470..415670	-	66	187926328	-	Rpic_4145	-	hypothetical protein
371	 66.10	0	416089..417147	+	352	187926329	-	Rpic_4146	-	putative signal peptide protein
372	 60.61	-1	418799..418930	-	43	187926330	-	Rpic_4149	-	putative lipoprotein transmembrane
373	 58.73	-1	418995..419120	-	41	187926331	-	Rpic_4150	-	hypothetical protein
374	 61.22	-1	419356..419502	+	48	187926332	-	Rpic_4151	-	putative transmembrane protein
375	 65.55	0	419646..420272	-	208	187926333	-	Rpic_4152	-	NAD(P)H dehydrogenase (quinone)
376	 66.46	0	420400..421347	+	315	187926334	-	Rpic_4153	-	transcriptional regulator, LysR family
377	 66.79	0	421438..423018	+	526	187926335	-	Rpic_4154	-	drug resistance transporter, EmrB/QacA subfamily
378	 69.12	+1	423030..423926	-	298	187926336	-	Rpic_4155	-	hypothetical protein
379	 63.01	0	424111..425040	+	309	187926337	-	Rpic_4156	-	putative signal peptide protein
380	 67.13	0	425045..425476	-	143	187926338	-	Rpic_4157	-	hypothetical protein
381	 65.50	0	425737..426768	-	343	187926339	-	Rpic_4158	-	cytochrome bd ubiquinol oxidase subunit II
382	 64.05	0	426765..428138	-	457	187926340	-	Rpic_4159	-	cytochrome bd ubiquinol oxidase subunit I
383	 60.96	-1	428154..428714	-	186	187926341	-	Rpic_4160	-	hypothetical protein
384	 63.92	0	428923..429177	+	84	187926342	-	Rpic_4161	-	Transglycosylase-associated protein
385	 61.22	-1	429339..429632	+	97	187926343	-	Rpic_4162	-	hypothetical protein
386	 67.35	0	430017..431339	+	440	187926344	-	Rpic_4163	-	major facilitator superfamily MFS_1
387	 64.67	0	431354..433909	+	851	187926345	-	Rpic_4164	-	nitrite reductase (NAD(P)H), large subunit
388	 64.31	0	433936..434274	+	112	187926346	-	Rpic_4165	-	nitrite reductase (NAD(P)H), small subunit
389	 66.91	0	434314..435546	+	410	187926347	-	Rpic_4166	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
390	 67.03	0	435846..438593	+	915	187926348	-	Rpic_4167	-	Nitrate reductase
391	 69.43	+1	438704..439318	+	204	187926349	-	Rpic_4168	-	hypothetical protein
392	 65.28	0	439315..440682	+	455	187926350	-	Rpic_4169	-	MATE efflux family protein
393	 68.96	+1	440739..442001	-	420	187926351	-	Rpic_4170	-	major facilitator superfamily MFS_1
394	 64.50	0	442094..443527	-	477	187926352	-	Rpic_4171	-	phospholipase D/Transphosphatidylase
395	 65.66	0	443713..445407	+	564	187926353	-	Rpic_4172	-	phospholipase D/Transphosphatidylase
396	 59.57	-1	445484..445624	-	46	187926354	-	Rpic_4173	-	Entericidin EcnAB
397	 64.56	0	445916..447484	+	522	187926355	-	Rpic_4174	-	methyl-accepting chemotaxis sensory transducer
398	 66.67	0	447541..448956	-	471	187926356	-	Rpic_4175	-	diguanylate cyclase/phosphodiesterase
399	 65.01	0	449181..450086	-	301	187926357	-	Rpic_4176	-	type IV pilus assembly PilZ
400	 64.33	0	450206..450718	+	170	187926358	-	Rpic_4177	-	GtrA family protein
401	 66.87	0	450735..451217	-	160	187926359	-	Rpic_4178	-	hypothetical protein
402	 66.14	0	451870..453210	+	446	187926360	-	Rpic_4179	-	diguanylate cyclase with PAS/PAC sensor
403	 61.70	0	453289..453852	-	187	187926361	-	Rpic_4180	-	putative signal peptide protein
404	 66.60	0	454153..455658	-	501	187926362	-	Rpic_4181	-	RND efflux system, outer membrane lipoprotein, NodT family
405	 64.22	0	455661..458762	-	1033	187926363	-	Rpic_4182	-	acriflavin resistance protein
406	 64.43	0	458759..461893	-	1044	187926364	-	Rpic_4183	-	acriflavin resistance protein
407	 67.03	0	461951..463339	-	462	187926365	-	Rpic_4184	-	efflux transporter, RND family, MFP subunit
408	 67.08	0	463593..464324	+	243	187926366	-	Rpic_4185	-	two component transcriptional regulator, winged helix family
409	 66.43	0	464308..465594	+	428	187926367	-	Rpic_4186	-	integral membrane sensor signal transduction histidine kinase
410	 71.69	+2	465701..466138	+	145	187926368	-	Rpic_4187	-	protein of unknown function DUF333
411	 59.98	-1	467180..467986	+	268	187926369	-	Rpic_4189	-	transposase IS4 family protein
412	 65.01	0	469423..470148	+	241	187926370	-	Rpic_4191	-	3,4-dihydroxy-2-butanone 4-phosphate synthase
413	 66.99	0	470183..470809	-	208	187926371	-	Rpic_4192	-	2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase
414	 64.08	0	470844..472196	-	450	187926372	-	Rpic_4193	-	gluconate transporter
415	 64.08	0	472277..472663	-	128	187926373	-	Rpic_4194	-	Endoribonuclease L-PSP
416	 67.27	0	472705..474189	-	494	187926374	-	Rpic_4195	-	N-acyl-D-amino-acid deacylase
417	 66.67	0	474191..475084	-	297	187926375	-	Rpic_4196	-	transcriptional regulator, RpiR family
418	 63.77	0	475223..476500	+	425	187926376	-	Rpic_4197	-	putative D-serine deaminase (D-serine dehydratase) protein
419	 65.70	0	476513..477439	+	308	187926377	-	Rpic_4198	-	PfkB domain protein
420	 65.35	0	477767..480196	-	809	187926378	-	Rpic_4199	-	peptidase S45 penicillin amidase
421	 67.45	0	480464..482500	-	678	187926379	-	Rpic_4200	-	multi-sensor hybrid histidine kinase
422	 68.75	+1	482652..483950	-	432	187926380	-	Rpic_4201	-	major facilitator superfamily MFS_1
423	 65.27	0	484103..484459	+	118	187926381	-	Rpic_4202	-	hypothetical protein
424	 62.72	0	484478..484756	-	92	187926382	-	Rpic_4203	-	hypothetical protein
425	 58.63	-1	485110..485358	+	82	187926383	-	Rpic_4204	-	protein of unknown function DUF1458
426	 63.89	0	485424..487586	-	720	187926384	-	Rpic_4205	-	acid phosphatase
427	 66.67	0	487861..489252	+	463	187926385	-	Rpic_4206	-	Di-haem cytochrome c peroxidase
428	 65.28	0	489376..490956	+	526	187926386	-	Rpic_4207	-	Integral membrane protein TerC
429	 67.32	0	490953..491870	-	305	187926387	-	Rpic_4208	-	protein of unknown function DUF6 transmembrane
430	 68.12	+1	491963..492790	-	275	187926388	-	Rpic_4209	-	transcriptional regulator, AraC family
431	 67.37	0	493003..494559	+	518	187926389	-	Rpic_4210	-	integral membrane sensor signal transduction histidine kinase
432	 65.61	0	494543..495202	+	219	187926390	-	Rpic_4211	-	two component transcriptional regulator, winged helix family
433	 68.59	+1	495308..495880	+	190	187926391	-	Rpic_4212	-	putative lipoprotein signal peptide
434	 62.59	0	495942..496382	-	146	187926392	-	Rpic_4213	-	UspA domain protein
435	 67.76	0	496537..497454	-	305	187926393	-	Rpic_4214	-	transcriptional regulator, AraC family
436	 67.59	0	497507..497938	-	143	187926394	-	Rpic_4215	-	putative signal peptide protein
437	 67.77	0	497935..498297	-	120	187926395	-	Rpic_4216	-	putative glycoprotein
438	 65.83	0	499011..501761	+	916	187926396	-	Rpic_4217	-	diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
439	 66.07	0	501885..502388	+	167	187926397	-	Rpic_4218	-	putative transmembrane protein
440	 68.88	+1	502447..503259	+	270	187926398	-	Rpic_4219	-	transcriptional regulator, ModE family
441	 66.67	0	503267..503764	+	165	187926399	-	Rpic_4220	-	flavodoxin/nitric oxide synthase
442	 66.80	0	503767..504510	-	247	187926400	-	Rpic_4221	-	ABC transporter related
443	 67.98	0	504507..505193	-	228	187926401	-	Rpic_4222	-	molybdate ABC transporter, inner membrane subunit
444	 70.91	+1	505450..506982	-	510	187926402	-	Rpic_4223	-	RND efflux system, outer membrane lipoprotein, NodT family
445	 64.17	0	507044..510250	-	1068	187926403	-	Rpic_4224	-	transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
446	 68.27	+1	510280..511590	-	436	187926404	-	Rpic_4225	-	efflux transporter, RND family, MFP subunit
447	 68.13	+1	511706..512797	-	363	187926405	-	Rpic_4226	-	Alpha/beta hydrolase fold-3 domain protein
64.67	MEAN

3.41	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.