IslandPathversion 1.0

IslandPath Analysis: Ralstonia pickettii 12J



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 64.67 STD DEV: 3.41
Ralstonia pickettii 12J chromosome 2, complete sequence - 1..1302238
1153 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
304	 62.76	0	351865..352632	+	255	187926262	-	Rpic_4077	-	short-chain dehydrogenase/reductase SDR
305	 65.67	0	352629..353534	+	301	187926263	-	Rpic_4078	-	SMP-30/Gluconolaconase/LRE domain protein
306	 65.74	0	353525..354709	-	394	187926264	-	Rpic_4079	-	hypothetical protein
307	 66.14	0	354849..355604	+	251	187926265	-	Rpic_4080	-	transcriptional regulator, IclR family
308	 66.86	0	355694..356710	+	338	187926266	-	Rpic_4081	-	transcriptional regulator, LacI family
309	 65.21	0	356732..358516	-	594	187926267	-	Rpic_4082	-	Dihydroxy-acid dehydratase
310	 67.78	0	358820..359359	+	179	187926268	-	Rpic_4083	-	hypothetical protein
311	 64.24	0	359364..360023	-	219	187926269	-	Rpic_4084	-	isochorismatase hydrolase
312	 66.27	0	360158..361153	+	331	187926270	-	Rpic_4085	-	transcriptional regulator, AraC family
313	 67.76	0	361195..361377	-	60	187926271	-	Rpic_4086	-	17 kDa surface antigen
314	 64.35	0	361450..362010	-	186	187926272	-	Rpic_4087	-	protein of unknown function YGGT
315	 65.96	0	362188..362751	+	187	187926273	-	Rpic_4088	-	PEBP family protein
316	 65.45	0	362801..363787	-	328	187926274	-	Rpic_4089	-	aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein
317	 66.33	0	363885..364178	-	97	187926275	-	Rpic_4090	-	hypothetical protein
318	 68.85	+1	364165..365124	-	319	187926276	-	Rpic_4091	-	PBS lyase HEAT domain protein repeat-containing protein
319	 61.05	-1	365132..365398	-	88	187926277	-	Rpic_4092	-	4Fe-4S ferredoxin iron-sulfur binding domain protein
320	 64.52	0	365401..367125	-	574	187926278	-	Rpic_4093	-	fumarate reductase/succinate dehydrogenase flavoprotein domain protein
321	 66.16	0	367122..367907	-	261	187926279	-	Rpic_4094	-	transcriptional regulator, GntR family
322	 62.01	0	368303..369289	+	328	187926280	-	Rpic_4095	-	periplasmic binding protein/LacI transcriptional regulator
323	 66.29	0	369390..370967	+	525	187926281	-	Rpic_4096	-	ABC transporter related
324	 63.52	0	370964..372013	+	349	187926282	-	Rpic_4097	-	Monosaccharide-transporting ATPase
325	 63.31	0	372010..373083	+	357	187926283	-	Rpic_4098	-	Monosaccharide-transporting ATPase
326	 59.50	-1	373130..373492	+	120	187926284	-	Rpic_4099	-	3-dehydroquinate dehydratase
327	 57.89	-1	373541..374110	-	189	187926285	-	Rpic_4100	-	hypothetical protein
328	 60.33	-1	374148..374573	-	141	187926286	-	Rpic_4101	-	hypothetical protein
329	 62.59	0	374596..375258	-	220	187926287	-	Rpic_4102	-	bifunctional deaminase-reductase domain protein
330	 64.18	0	375434..376357	+	307	187926288	-	Rpic_4103	-	putative exonuclease RdgC
331	 62.50	0	377283..377714	-	143	187926289	-	Rpic_4106	-	hypothetical protein
332	 66.39	0	378084..379184	+	366	187926290	-	Rpic_4107	-	branched-chain amino acid aminotransferase
333	 67.16	0	379192..380004	+	270	187926291	-	Rpic_4108	-	alpha/beta hydrolase fold
334	 62.63	0	380307..381470	+	387	187926292	-	Rpic_4109	-	Alkane 1-monooxygenase
335	 65.91	0	381480..381743	-	87	187926293	-	Rpic_4110	-	Cupin 2 conserved barrel domain protein
336	 67.11	0	381972..382871	+	299	187926294	-	Rpic_4111	-	transcriptional regulator, AraC family
337	 67.68	0	382967..383857	+	296	187926295	-	Rpic_4112	-	NmrA family protein
338	 63.87	0	383983..384768	+	261	187926296	-	Rpic_4113	-	hypothetical protein
339	 63.81	0	384843..385367	+	174	187926297	-	Rpic_4114	-	conserved hypothetical signal peptide protein
340	 66.67	0	385400..385879	-	159	187926298	-	Rpic_4115	-	PEBP family protein
341	 62.53	0	386098..386460	-	120	187926299	-	Rpic_4116	-	protein of unknown function DUF1304
342	 65.41	0	386646..387362	+	238	187926300	-	Rpic_4117	-	Carboxymethylenebutenolidase
343	 63.74	0	387783..388055	+	90	187926301	-	Rpic_4118	-	hypothetical protein
344	 68.21	+1	388079..389701	-	540	187926302	-	Rpic_4119	-	amine oxidase
345	 64.13	0	389701..391278	-	525	187926303	-	Rpic_4120	-	Spermine synthase
346	 63.41	0	391456..391854	+	132	187926304	-	Rpic_4121	-	protein of unknown function DUF350
347	 65.14	0	391904..392953	+	349	187926305	-	Rpic_4122	-	putative transmembrane protein
348	 66.46	0	393041..394486	+	481	187926306	-	Rpic_4123	-	putative transmembrane protein
349	 64.55	0	394483..394671	+	62	187926307	-	Rpic_4124	-	putative serine-rich transmembrane protein
350	 68.08	+1	394668..395093	+	141	187926308	-	Rpic_4125	-	S-adenosylmethionine decarboxylase proenzyme
351	 63.99	0	395095..396141	-	348	187926309	-	Rpic_4126	-	diguanylate cyclase with GAF sensor
352	 63.71	0	396242..397627	-	461	187926310	-	Rpic_4127	-	fumarate hydratase, class II
353	 65.24	0	397763..399235	+	490	187926311	-	Rpic_4128	-	drug resistance transporter, EmrB/QacA subfamily
354	 66.11	0	399261..401411	-	716	187926312	-	Rpic_4129	-	UvrD/REP helicase
355	 64.78	0	401512..401829	-	105	187926313	-	Rpic_4130	-	hypothetical protein
356	 66.07	0	401976..402308	-	110	187926314	-	Rpic_4131	-	protein of unknown function UPF0060
357	 69.81	+1	402391..402804	-	137	187926315	-	Rpic_4132	-	PfkB domain protein
358	 66.08	0	402932..403954	-	340	187926316	-	Rpic_4133	-	GumN family protein
359	 65.48	0	404038..405219	-	393	187926317	-	Rpic_4134	-	hypothetical protein
360	 67.91	0	405407..405808	+	133	187926318	-	Rpic_4135	-	putative transmembrane protein
361	 64.08	0	405891..408209	+	772	187926319	-	Rpic_4136	-	TonB-dependent receptor
362	 65.48	0	408197..409462	+	421	187926320	-	Rpic_4137	-	glycosyl hydrolase BNR repeat-containing protein
363	 66.86	0	409459..409965	+	168	187926321	-	Rpic_4138	-	putative signal peptide protein
364	 67.38	0	410199..410477	-	92	187926322	-	Rpic_4139	-	hypothetical protein
365	 65.09	0	410495..411253	-	252	187926323	-	Rpic_4140	-	protein of unknown function DUF81
366	 66.44	0	411384..412268	+	294	187926324	-	Rpic_4141	-	transcriptional regulator, LysR family
367	 67.62	0	412413..412934	+	173	187926325	-	Rpic_4142	-	putative transmembrane protein
368	 65.49	0	413084..414781	+	565	187926326	-	Rpic_4143	-	AMP-dependent synthetase and ligase
369	 61.99	0	414858..415199	-	113	187926327	-	Rpic_4144	-	hypothetical protein
370	 58.71	-1	415470..415670	-	66	187926328	-	Rpic_4145	-	hypothetical protein
371	 66.10	0	416089..417147	+	352	187926329	-	Rpic_4146	-	putative signal peptide protein
372	 60.61	-1	418799..418930	-	43	187926330	-	Rpic_4149	-	putative lipoprotein transmembrane
373	 58.73	-1	418995..419120	-	41	187926331	-	Rpic_4150	-	hypothetical protein
374	 61.22	-1	419356..419502	+	48	187926332	-	Rpic_4151	-	putative transmembrane protein
375	 65.55	0	419646..420272	-	208	187926333	-	Rpic_4152	-	NAD(P)H dehydrogenase (quinone)
376	 66.46	0	420400..421347	+	315	187926334	-	Rpic_4153	-	transcriptional regulator, LysR family
377	 66.79	0	421438..423018	+	526	187926335	-	Rpic_4154	-	drug resistance transporter, EmrB/QacA subfamily
378	 69.12	+1	423030..423926	-	298	187926336	-	Rpic_4155	-	hypothetical protein
379	 63.01	0	424111..425040	+	309	187926337	-	Rpic_4156	-	putative signal peptide protein
380	 67.13	0	425045..425476	-	143	187926338	-	Rpic_4157	-	hypothetical protein
381	 65.50	0	425737..426768	-	343	187926339	-	Rpic_4158	-	cytochrome bd ubiquinol oxidase subunit II
382	 64.05	0	426765..428138	-	457	187926340	-	Rpic_4159	-	cytochrome bd ubiquinol oxidase subunit I
383	 60.96	-1	428154..428714	-	186	187926341	-	Rpic_4160	-	hypothetical protein
384	 63.92	0	428923..429177	+	84	187926342	-	Rpic_4161	-	Transglycosylase-associated protein
385	 61.22	-1	429339..429632	+	97	187926343	-	Rpic_4162	-	hypothetical protein
386	 67.35	0	430017..431339	+	440	187926344	-	Rpic_4163	-	major facilitator superfamily MFS_1
387	 64.67	0	431354..433909	+	851	187926345	-	Rpic_4164	-	nitrite reductase (NAD(P)H), large subunit
388	 64.31	0	433936..434274	+	112	187926346	-	Rpic_4165	-	nitrite reductase (NAD(P)H), small subunit
389	 66.91	0	434314..435546	+	410	187926347	-	Rpic_4166	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
390	 67.03	0	435846..438593	+	915	187926348	-	Rpic_4167	-	Nitrate reductase
391	 69.43	+1	438704..439318	+	204	187926349	-	Rpic_4168	-	hypothetical protein
392	 65.28	0	439315..440682	+	455	187926350	-	Rpic_4169	-	MATE efflux family protein
393	 68.96	+1	440739..442001	-	420	187926351	-	Rpic_4170	-	major facilitator superfamily MFS_1
394	 64.50	0	442094..443527	-	477	187926352	-	Rpic_4171	-	phospholipase D/Transphosphatidylase
395	 65.66	0	443713..445407	+	564	187926353	-	Rpic_4172	-	phospholipase D/Transphosphatidylase
396	 59.57	-1	445484..445624	-	46	187926354	-	Rpic_4173	-	Entericidin EcnAB
397	 64.56	0	445916..447484	+	522	187926355	-	Rpic_4174	-	methyl-accepting chemotaxis sensory transducer
398	 66.67	0	447541..448956	-	471	187926356	-	Rpic_4175	-	diguanylate cyclase/phosphodiesterase
399	 65.01	0	449181..450086	-	301	187926357	-	Rpic_4176	-	type IV pilus assembly PilZ
400	 64.33	0	450206..450718	+	170	187926358	-	Rpic_4177	-	GtrA family protein
401	 66.87	0	450735..451217	-	160	187926359	-	Rpic_4178	-	hypothetical protein
402	 66.14	0	451870..453210	+	446	187926360	-	Rpic_4179	-	diguanylate cyclase with PAS/PAC sensor
403	 61.70	0	453289..453852	-	187	187926361	-	Rpic_4180	-	putative signal peptide protein
64.67	MEAN

3.41	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.