IslandPathversion 1.0

IslandPath Analysis: Ralstonia pickettii 12J



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 64.67 STD DEV: 3.41
Ralstonia pickettii 12J chromosome 2, complete sequence - 1..1302238
1153 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
254	 65.72	0	294663..295298	-	211	187926212	-	Rpic_4027	-	DSBA oxidoreductase
255	 66.07	0	295308..295982	-	224	187926213	-	Rpic_4028	-	3-oxoacid CoA-transferase, B subunit
256	 67.58	0	296011..296775	-	254	187926214	-	Rpic_4029	-	coenzyme A transferase
257	 65.85	0	297014..298231	+	405	187926215	-	Rpic_4030	-	sodium/hydrogen exchanger
258	 64.86	0	298275..298829	+	184	187926216	-	Rpic_4031	-	NADPH-dependent FMN reductase
259	 65.01	0	299241..300083	-	280	187926217	-	Rpic_4032	-	hypothetical protein
260	 65.82	0	300214..300921	+	235	187926218	-	Rpic_4033	-	GCN5-related N-acetyltransferase
261	 69.08	+1	300931..302544	-	537	187926219	-	Rpic_4034	-	putative transmembrane protein
262	 65.50	0	302703..303215	-	170	187926220	-	Rpic_4035	-	hypothetical protein
263	 64.72	0	303474..304295	+	273	187926221	-	Rpic_4036	-	ABC transporter related
264	 64.02	0	304279..305109	+	276	187926222	-	Rpic_4037	-	binding-protein-dependent transport systems inner membrane component
265	 62.09	0	305143..306147	+	334	187926223	-	Rpic_4038	-	NMT1/THI5 like domain protein
266	 68.55	+1	306168..306962	+	264	187926224	-	Rpic_4039	-	transcriptional regulator, IclR family
267	 67.34	0	307034..308221	+	395	187926225	-	Rpic_4040	-	L-carnitine dehydratase/bile acid-inducible protein F
268	 68.19	+1	308224..309078	+	284	187926226	-	Rpic_4041	-	citrate synthase
269	 66.11	0	309075..309971	+	298	187926227	-	Rpic_4042	-	SMP-30/Gluconolaconase/LRE domain protein
270	 56.60	-2	310832..311149	+	105	187926228	-	Rpic_4043	-	flagellar transcriptional activator
271	 58.65	-1	311227..311787	+	186	187926229	-	Rpic_4044	-	flagellar transcriptional activator FlhC
272	 61.67	0	312328..313188	+	286	187926230	-	Rpic_4045	-	flagellar motor protein MotA
273	 65.30	0	313389..314336	+	315	187926231	-	Rpic_4046	-	OmpA/MotB domain protein
274	 66.43	0	314362..314775	+	137	187926232	-	Rpic_4047	-	response regulator receiver protein
275	 64.97	0	314794..316968	+	724	187926233	-	Rpic_4048	-	CheA signal transduction histidine kinase
276	 60.57	-1	317049..317540	+	163	187926234	-	Rpic_4049	-	CheW protein
277	 65.85	0	317664..319511	+	615	187926235	-	Rpic_4050	-	methyl-accepting chemotaxis sensory transducer
278	 65.93	0	319736..321640	+	634	187926236	-	Rpic_4051	-	methyl-accepting chemotaxis sensory transducer
279	 62.70	0	321744..322625	+	293	187926237	-	Rpic_4052	-	MCP methyltransferase, CheR-type
280	 64.56	0	322622..323332	+	236	187926238	-	Rpic_4053	-	CheD
281	 66.40	0	323356..324483	+	375	187926239	-	Rpic_4054	-	response regulator receiver modulated CheB methylesterase
282	 60.45	-1	324633..325034	+	133	187926240	-	Rpic_4055	-	response regulator receiver protein
283	 63.98	0	325034..325702	+	222	187926241	-	Rpic_4056	-	chemotaxis phosphatase, CheZ
284	 65.42	0	325778..326818	-	346	187926242	-	Rpic_4057	-	ApbE family lipoprotein
285	 66.43	0	326823..327245	-	140	187926243	-	Rpic_4058	-	cytochrome c class I
286	 61.69	0	327484..329433	+	649	187926244	-	Rpic_4059	-	Nitrous-oxide reductase
287	 64.45	0	329452..332115	+	887	187926245	-	Rpic_4060	-	FMN-binding domain protein
288	 64.27	0	332112..333407	+	431	187926246	-	Rpic_4061	-	periplasmic copper-binding
289	 66.98	0	333385..334341	+	318	187926247	-	Rpic_4062	-	ABC transporter related
290	 65.58	0	334338..335162	+	274	187926248	-	Rpic_4063	-	putative NosY transmembrane protein
291	 68.36	+1	335159..335689	+	176	187926249	-	Rpic_4064	-	NosL family protein
292	 67.66	0	335692..336294	+	200	187926250	-	Rpic_4065	-	hypothetical protein
293	 66.84	0	336488..337651	+	387	187926251	-	Rpic_4066	-	flagellar biosynthetic protein FlhB
294	 64.79	0	337945..340071	+	708	187926252	-	Rpic_4067	-	flagellar biosynthesis protein FlhA
295	 66.51	0	340068..341966	+	632	187926253	-	Rpic_4068	-	GTP-binding signal recognition particle SRP54 G- domain
296	 66.41	0	341982..342773	+	263	187926254	-	Rpic_4069	-	hypothetical protein
297	 63.25	0	342782..343543	+	253	187926255	-	Rpic_4070	-	RNA polymerase, sigma 28 subunit, FliA/WhiG
298	 64.43	0	343922..345349	+	475	187926256	-	Rpic_4071	-	xanthine permease
299	 65.00	0	345378..346460	-	360	187926257	-	Rpic_4072	-	Aldose 1-epimerase
300	 63.48	0	346457..347680	-	407	187926258	-	Rpic_4073	-	transcriptional regulator, AraC family
301	 61.71	0	347950..348978	+	342	187926259	-	Rpic_4074	-	D-xylose ABC transporter, periplasmic substrate-binding protein
302	 63.06	0	349060..350613	+	517	187926260	-	Rpic_4075	-	D-xylose ABC transporter, ATPase subunit
303	 63.59	0	350616..351818	+	400	187926261	-	Rpic_4076	-	Monosaccharide-transporting ATPase
304	 62.76	0	351865..352632	+	255	187926262	-	Rpic_4077	-	short-chain dehydrogenase/reductase SDR
305	 65.67	0	352629..353534	+	301	187926263	-	Rpic_4078	-	SMP-30/Gluconolaconase/LRE domain protein
306	 65.74	0	353525..354709	-	394	187926264	-	Rpic_4079	-	hypothetical protein
307	 66.14	0	354849..355604	+	251	187926265	-	Rpic_4080	-	transcriptional regulator, IclR family
308	 66.86	0	355694..356710	+	338	187926266	-	Rpic_4081	-	transcriptional regulator, LacI family
309	 65.21	0	356732..358516	-	594	187926267	-	Rpic_4082	-	Dihydroxy-acid dehydratase
310	 67.78	0	358820..359359	+	179	187926268	-	Rpic_4083	-	hypothetical protein
311	 64.24	0	359364..360023	-	219	187926269	-	Rpic_4084	-	isochorismatase hydrolase
312	 66.27	0	360158..361153	+	331	187926270	-	Rpic_4085	-	transcriptional regulator, AraC family
313	 67.76	0	361195..361377	-	60	187926271	-	Rpic_4086	-	17 kDa surface antigen
314	 64.35	0	361450..362010	-	186	187926272	-	Rpic_4087	-	protein of unknown function YGGT
315	 65.96	0	362188..362751	+	187	187926273	-	Rpic_4088	-	PEBP family protein
316	 65.45	0	362801..363787	-	328	187926274	-	Rpic_4089	-	aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein
317	 66.33	0	363885..364178	-	97	187926275	-	Rpic_4090	-	hypothetical protein
318	 68.85	+1	364165..365124	-	319	187926276	-	Rpic_4091	-	PBS lyase HEAT domain protein repeat-containing protein
319	 61.05	-1	365132..365398	-	88	187926277	-	Rpic_4092	-	4Fe-4S ferredoxin iron-sulfur binding domain protein
320	 64.52	0	365401..367125	-	574	187926278	-	Rpic_4093	-	fumarate reductase/succinate dehydrogenase flavoprotein domain protein
321	 66.16	0	367122..367907	-	261	187926279	-	Rpic_4094	-	transcriptional regulator, GntR family
322	 62.01	0	368303..369289	+	328	187926280	-	Rpic_4095	-	periplasmic binding protein/LacI transcriptional regulator
323	 66.29	0	369390..370967	+	525	187926281	-	Rpic_4096	-	ABC transporter related
324	 63.52	0	370964..372013	+	349	187926282	-	Rpic_4097	-	Monosaccharide-transporting ATPase
325	 63.31	0	372010..373083	+	357	187926283	-	Rpic_4098	-	Monosaccharide-transporting ATPase
326	 59.50	-1	373130..373492	+	120	187926284	-	Rpic_4099	-	3-dehydroquinate dehydratase
327	 57.89	-1	373541..374110	-	189	187926285	-	Rpic_4100	-	hypothetical protein
328	 60.33	-1	374148..374573	-	141	187926286	-	Rpic_4101	-	hypothetical protein
329	 62.59	0	374596..375258	-	220	187926287	-	Rpic_4102	-	bifunctional deaminase-reductase domain protein
330	 64.18	0	375434..376357	+	307	187926288	-	Rpic_4103	-	putative exonuclease RdgC
331	 62.50	0	377283..377714	-	143	187926289	-	Rpic_4106	-	hypothetical protein
332	 66.39	0	378084..379184	+	366	187926290	-	Rpic_4107	-	branched-chain amino acid aminotransferase
333	 67.16	0	379192..380004	+	270	187926291	-	Rpic_4108	-	alpha/beta hydrolase fold
334	 62.63	0	380307..381470	+	387	187926292	-	Rpic_4109	-	Alkane 1-monooxygenase
335	 65.91	0	381480..381743	-	87	187926293	-	Rpic_4110	-	Cupin 2 conserved barrel domain protein
336	 67.11	0	381972..382871	+	299	187926294	-	Rpic_4111	-	transcriptional regulator, AraC family
337	 67.68	0	382967..383857	+	296	187926295	-	Rpic_4112	-	NmrA family protein
338	 63.87	0	383983..384768	+	261	187926296	-	Rpic_4113	-	hypothetical protein
339	 63.81	0	384843..385367	+	174	187926297	-	Rpic_4114	-	conserved hypothetical signal peptide protein
340	 66.67	0	385400..385879	-	159	187926298	-	Rpic_4115	-	PEBP family protein
341	 62.53	0	386098..386460	-	120	187926299	-	Rpic_4116	-	protein of unknown function DUF1304
342	 65.41	0	386646..387362	+	238	187926300	-	Rpic_4117	-	Carboxymethylenebutenolidase
343	 63.74	0	387783..388055	+	90	187926301	-	Rpic_4118	-	hypothetical protein
344	 68.21	+1	388079..389701	-	540	187926302	-	Rpic_4119	-	amine oxidase
345	 64.13	0	389701..391278	-	525	187926303	-	Rpic_4120	-	Spermine synthase
346	 63.41	0	391456..391854	+	132	187926304	-	Rpic_4121	-	protein of unknown function DUF350
347	 65.14	0	391904..392953	+	349	187926305	-	Rpic_4122	-	putative transmembrane protein
348	 66.46	0	393041..394486	+	481	187926306	-	Rpic_4123	-	putative transmembrane protein
349	 64.55	0	394483..394671	+	62	187926307	-	Rpic_4124	-	putative serine-rich transmembrane protein
350	 68.08	+1	394668..395093	+	141	187926308	-	Rpic_4125	-	S-adenosylmethionine decarboxylase proenzyme
351	 63.99	0	395095..396141	-	348	187926309	-	Rpic_4126	-	diguanylate cyclase with GAF sensor
352	 63.71	0	396242..397627	-	461	187926310	-	Rpic_4127	-	fumarate hydratase, class II
353	 65.24	0	397763..399235	+	490	187926311	-	Rpic_4128	-	drug resistance transporter, EmrB/QacA subfamily
64.67	MEAN

3.41	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.